Fourier transform infrared/vibrational circular dichroism spectroscopy as an informative tool for the investigation of large supramolecular complexes of biological macromolecules

Biopolymers

Volumn 78, Issue 6, 2005, Pages 329-339

  Polyanichko, Alexander ^a,b   Wieser, Helmut ^a  

^a UNIVERSITY OF CALGARY   (Canada)

^b ST PETERSBURG STATE UNIVERSITY   (Russian Federation)

Author keywords

DNA protein interactions; Fourier transform infrared; H1; HMGB1; Vibrational circular dichroism

Indexed keywords

COMPLEXATION; DATA REDUCTION; DNA; FOURIER TRANSFORM INFRARED SPECTROSCOPY; LIGHT SCATTERING; PROTEINS; SUPRAMOLECULAR CHEMISTRY;

DNA-PROTEIN INTERACTIONS; H1; HMBG1; VIBRATIONAL CIRCULAR DICHROISM;

MACROMOLECULES;

DNA; HIGH MOBILITY GROUP B1 PROTEIN; HISTONE H1;

ANIMAL CELL; ARTICLE; CATTLE; CHROMATIN; CIRCULAR DICHROISM; DNA BINDING; DNA PROTEIN COMPLEX; INFRARED SPECTROSCOPY; LIGHT SCATTERING; MACROMOLECULE; MOLECULAR INTERACTION; NONHUMAN; PROTEIN DNA INTERACTION; ULTRAVIOLET SPECTROSCOPY;

ANIMALS; CATTLE; CIRCULAR DICHROISM; DNA; HISTONES; HMGB1 PROTEIN; MACROMOLECULAR SUBSTANCES; SPECTROPHOTOMETRY, ULTRAVIOLET; SPECTROSCOPY, FOURIER TRANSFORM INFRARED;

EID: 24044555588     PISSN: 00063525     EISSN: None     Source Type: Journal    
DOI: 10.1002/bip.20299     Document Type: Article

References (45)

1. Jordan, C. F.; Lerman, L. S.; Venable, J. H. Nat New Biol 1972, 236, 67-70.
2. Tinoco, I., Jr.; Mickols, W.; Maestre, M. F.; Bustamante, C. Annu Rev Biophys Biophys Chem 1987, 16, 319-349.
3. Polavarapu, P. L.; Zhao, C. J Anal Chem 2000, 366, 727-734.
4. Keiderling, T. A. Curr Opin Chem Biol 2002, 6, 682-688.
5. Andrushchenko, V.; Tsankov, D.; Wieser, H. J Mol Struct 2003, 661-662, 541-560.
6. Bewley, C. A.; Gronenborn, A. M.; Clore G. M. Annu Rev Biophys Biomol Struct 1998, 27, 105-131.
7. Bustin, M.; Reeves, R. Prog Nucleic Acids Res Mol Biol 1996, 54, 35-100.
8. Thomas, J. O.; Travers, A. A. Trends Biochem Sci 2001, 26, 167-174.
9. Thomas, J. O. Biochem Soc Trans 2001, 29, 395-401.
10. Zlatanova, J.; van Holde, K. Bioessays 1998, 20, 584-588.
11. Chikhirzhina, E. V.; Vorob'ev, V. I. Tsitologiia 2002, 44, 721-736.
12. Chikhirzhina, E. V.; Polianichko, A. M.; Skvortsov, A. N.; Kostyleva, E. I.; Houssier, C.; Vorob'ev, V. I. Mol Biol (Mosk) 2002, 36, 525-531.
13. Kohlstaedt, L. A.; Sung, E. C.; Fujishige, A.; Cole, R. D. J Biol Chem 1987, 262, 524-526.
14. Webb, M.; Thomas, J. O. J Mol Biol 1999, 294, 373-387.
15. Ohno, T.; Umeda, S.; Hamasaki, N.; Kang, D. Biochem Biophys Res Commun 2000, 271, 492-498.
16. Bianchi, M. E.; Beltrame, M.; Paonessa, G. Science 1989, 243, 1056-1059.
17. Gariglio, M.; Ying, G. G.; Hertel, L.; Gaboli, M.; Clerc, R. G.; Landolfo, S. Exp Cell Res 1997, 236, 472-481.
18. Bianchi, M. E.; Beltrame, M. Am J Hum Genet 1998, 63, 1573-1577.
19. Segall, A. M.; Goodman, S. D.; Nash, H. A. EMBO J 1994, 13, 4536-4548.
20. Kohlstaedt, L. A.; Cole, R. D. Biochemistry 1994, 33, 570-575.
21. Baxevanis, A. D.; Landsman, D. Nucleic Acids Res 1995, 23, 1604-1613.
22. Sutrias-Grau, M.; Bianchi, M. E.; Bernues, J. J Biol Chem 1999, 274, 1628-1634.
23. Lichota, J.; Grasser, K. D. Biol Chem 2003, 384, 1019-1027.
24. Zhang, S. B.; Huang, J.; Zhao, H.; Zhang, Y.; Hou, C. H.; Cheng, X. D.; Jiang, C.; Li, M. Q.; Hu, J.; Qian, R. L. Cell Res 2003, 13, 351-359.
25. Polyanichko, A. M.; Chikhirzhina, E. V.; Skvortsov, A. N.; Kostyleva, E. I.; Colson, P.; Houssier, C.; Vorob'ev, V. I. J Biomol Struct Dyn 2002, 19, 1053-1062.
26. Diez-Caballero, T.; Aviles, F. X.; Albert, A. Nucleic Acids Res 1981, 9, 1383-1393.
27. Zlatanova, J.; Yaneva, J. DNA Cell Biol 1991, 10, 239-248.
28. Widom, J. Annu Rev Biophys Biomol Struct 1998, 27, 285-327.
29. Travers, A. Trends Biochem Sci 1999, 24, 4-7.
30. Polyanichko, A. M.; Andrushchenko, V. V.; Chikhirzhina, E. V.; Vorob'ev, V. I.; Wieser, H. Nucleic Acids Res 2004, 32, 989-996.
31. Tsankov, D.Eggimann, T.; Wieser, H. Appl Spectrosc Rev 1995, 49, 132-138.
32. Tsuboi, M. In Basic Principles in Nucleic Acid Chemistry; Ts'o, P. O. P., Ed.; Academic: New York, 1974; Vol I, pp 400-451.
33. Taillandier, E.; Liquier, J.; Taboury, J. A. In Advances in Infrared and Raman Spectroscopy; Clark, R. J. H., Hester, R. E., Eds.; Wiley Heyden: New York, 1985; Vol 12, pp 65-114.
34. Andrushchenko, V.; Leonenko, Z.; Cramb, D.; van de Sande, H.; Wieser, H. Biopolymers 2002, 61, 243-260.
35. Andrushchenko, V.; van de Sande, H.; Wieser, H. Biopolymers 2003, 69, 529-545.
36. Barth, A. Prog Biophys Mol Biol 2000, 74, 141-173.
37. Tsuboi, M. Appl Spectrosc Rev 1969, 3, 45-90.
38. Andrushchenko, V. V.; Wieser, H.; Bour, P. J Phys Chem B 2002, 106, 12623-12634.
39. Taillandier, E. In Structure and Methods. DNA and RNA; Sarma, R. H., Sarma, M. H., Eds.; Adenine Press: New York, 1990; Vol 3, pp 73-78.
40. Polyanichko, A. M.; Chikhirzhina, E. V.; Andrushchenko, V. V.; Kostyleva, E. I.; Wieser, H.; Vorob'ev, V. I. Mol Biol 2004, 38, 701-712.
41. Polyanichko, A. M. Ph.D. thesis, St. Petersburg State University, 2003.
42. Privalov, P. L.; Jelesarov, I.; Read, C. M.; Dragan, A. I.; Crane-Robinson, C. J Mol Biol 1999, 294, 997-1013.
43. Love, J. J.; Li, X.; Chung, J.; Dyson, H. J.; Wright, P. E. Biochemistry 2004, 43, 8725-8734.
44. Šponar, J.; Frič, I. Biopolymers 1972, 11, 2317-2330.
45. Shin, Y. A.; Eichhorn, G. L. Biopolymers 1984, 23, 325-335.