A three-dimensional cryo-electron microscopy structure of the bacteriophage φKZ head

Journal of Molecular Biology

Volumn 352, Issue 1, 2005, Pages 117-124

  Fokine, Andrei ^a   Kostyuchenko, Victor A ^a   Efimov, Andrey V ^b   Kurochkina, Lidia P ^b   Sykilinda, Nina N ^b   Robben, Johan ^c   Volckaert, Guido ^d   Hoenger, Andreas ^e   Chipman, Paul R ^a   Battisti, Anthony J ^a   Rossmann, Michael G ^a   Mesyanzhinov, Vadim V ^b  

^a PURDUE UNIVERSITY   (United States)

^b SHEMYAKIN OVCHINNIKOV INSTITUTE OF BIOORGANIC CHEMISTRY   (Russian Federation)

^c HASSELT UNIVERSITY   (Belgium)

^d LABORATORY OF GENE TECHNOLOGY   (Belgium)

^e EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

Author keywords

Bacteriophage KZ; Capsid structure; Cryo electron microscopy; Pseudomonas aeruginosa; Three dimensional image reconstruction

Indexed keywords

CAPSID PROTEIN; DNA; GENOMIC DNA; GLYCOPROTEIN GP 120; SYNAPTOTAGMIN;

ARTICLE; BACTERIOPHAGE; CHEMICAL STRUCTURE; CONTROLLED STUDY; CRYOELECTRON MICROSCOPY; IMAGE RECONSTRUCTION; NONHUMAN; PRIORITY JOURNAL; PSEUDOMONAS AERUGINOSA; SURFACE PROPERTY; VIRUS CAPSID;

MIRIDAE; PSEUDOMONAS AERUGINOSA; PSEUDOMONAS PHAGE PHIKZ;

EID: 23944450043     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2005.07.018     Document Type: Article

References (33)

1. V.N. Krylov, T.A. Smirnova, I.B. Minenkova, T.G. Plotnikova, I.Z. Zhazikov, and E.A. Khrenova Pseudomonas bacteriophage φKZ contains an inner body in its capsid Can. J. Microbiol. 30 1984 758 762
2. V.N. Krylov, T.A. Smirnova, B.A. Rebentish, and I.B. Minenkova Structure of φKZ bacteriophage particles Vopr. Virusol. 5 1978 568 571
3. H. Giamarellou Therapeutic guidelines for Pseudomonas aeruginosa infections Int. J. Antimicrob. Agents 16 2000 103 106
4. C.K. Stover, X.Q. Pham, A.L. Erwin, S.D. Mizoguchi, P. Warrener, and M.J. Hickey Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen Nature 406 2000 959 964
5. W.C. Summers Bacteriophage therapy Annu. Rev. Microbiol. 55 2001 437 451
6. N. Matsko, D. Klinov, A. Manykin, V. Demin, and S. Klimenko Atomic force microscopy analysis of bacteriophages φKZ and T4 J. Electron Microsc. 50 2001 417 422
7. J.D. Karam Molecular Biology of Bacteriophage T4 1994 American Society for Microbiology Washington, DC
8. P.G. Leiman, S. Kanamaru, V.V. Mesyanzhinov, F. Arisaka, and M.G. Rossmann Structure and morphogenesis of bacteriophage T4 Cell. Mol. Life Sci. 60 2003 2356 2370
9. V.V. Mesyanzhinov, J. Robben, B. Grymonprez, V.A. Kostyuchenko, M.V. Bourkaltseva, and N.N. Sykilinda The genome of bacteriophage φKZ of Pseudomonas aeruginosa J. Mol. Biol. 317 2002 1 19
10. A. Fokine, P.R. Chipman, P.G. Leiman, V.V. Mesyanzhinov, V.B. Rao, and M.G. Rossmann Molecular architecture of the prolate head of bacteriophage T4 Proc. Natl Acad. Sci. USA 101 2004 6003 6008
11. A. Fokine, P.G. Leiman, M.M. Shneider, B. Ahvazi, K.M. Boeshans, and A.C. Steven Structural and functional similarities between the capsid proteins of bacteriophages T4 and HK97 point to a common ancestry Proc. Natl Acad. Sci. USA 102 2005 7163 7168
12. M.C. Morais, S. Kanamaru, M.O. Badasso, J.S. Koti, B.A.L. Owen, and C.T. McMurray Bacteriophage φ29 scaffolding protein gp7 before and after prohead assembly Nature Struct. Biol. 10 2003 572 576
13. W. Jiang, Z. Li, Z. Zhang, M.L. Baker, P.E. Prevelige Jr, and W. Chiu Coat protein fold and maturation transition of bacteriophage P22 seen at subnanometer resolutions Nature Struct. Biol. 10 2003 131 135
14. W.R. Wikoff, L. Liljas, R.L. Duda, H. Tsuruta, R.W. Hendrix, and J.E. Johnson Topologically linked protein rings in the bacteriophage HK97 capsid Science 289 2000 2129 2133
15. D.L.D. Caspar, and A. Klug Physical principles in the construction of regular viruses Cold Spring Harbor Symp. Quant. Biol. 27 1962 1 24
16. H.-W. Ackerman Tailed bacteriophages: the order Caudovirales Advan. Virus Res. 51 1998 135 201
17. P.G. Leiman, P.R. Chipman, V.A. Kostyuchenko, V.V. Mesyanzhinov, and M.G. Rossmann Three-dimensional rearrangement of proteins in the tail of bacteriophage T4 on infection of its host Cell 118 2004 419 429
18. M.C. Morais, Y. Tao, N.H. Olson, S. Grimes, P.J. Jardine, and D.L. Anderson Cryoelectron-microscopy image reconstruction of symmetry mismatches in bacteriophage φ29 J. Struct. Biol. 136 2001 190 200
19. A.A. Simpson, Y. Tao, P.G. Leiman, M.O. Badasso, Y. He, and P.J. Jardine Structure of the bacteriophage φ29 DNA packaging motor Nature 408 2000 745 750
20. E.V. Orlova, B. Gowen, A. Droge, A. Stiege, F. Weise, and R. Lurz Structure of a viral DNA gatekeeper at 10 Å resolution by cryo-electron microscopy EMBO J. 22 2003 1255 1262
21. M.E. Cerritelli, N. Cheng, A.H. Rosenberg, C.E. McPherson, F.P. Booy, and A.C. Steven Encapsidated conformation of bacteriophage T7 DNA Cell 91 1997 271 280
22. P. Gouet, J.M. Diprose, J.M. Grimes, R. Malby, J.N. Burroughs, and S. Zientara The highly ordered double-stranded RNA genome of bluetongue virus revealed by crystallography Cell 97 1999 481 490
23. K. Iwasaki, B.L. Trus, P.T. Wingfield, N. Cheng, G. Campusano, and V.B. Rao Molecular architecture of bacteriophage T4 capsid: vertex structure and bimodal binding of the stabilizing accessory protein, soc Virology 271 2000 321 333
24. M.C. Morais, K.H. Choi, J.S. Koti, P.R. Chipman, D.L. Anderson, and M.G. Rossmann Conservation of the capsid structure in tailed dsDNA bacteriophages: the pseudoatomic structure of φ29 Mol. Cell. 18 2005 149 159
25. T.L. Blundell, J.A. Jenkins, B.T. Sewell, L.H. Pearl, J.B. Cooper, and I.J. Tickle X-ray analyses of aspartic proteinases: the three-dimensional structure at 2.1 Å resolution of endothiapepsin J. Mol. Biol. 211 1999 919 941
26. N.G.A. Abrescia, J.J.B. Cockburn, J.M. Grimes, G.C. Sutton, J.M. Diprose, and S.J. Butcher Insights into assembly from structural analysis of bacteriophage PRD1 Nature 432 2004 68 74
27. P.L. Stewart, R.M. Burnett, M. Cyrklaff, and S.D. Fuller Image reconstruction reveals the complex molecular organization of adenovirus Cell 67 1991 145 154
28. A.A. Simpson, N. Nandhagopal, J.L. van Etten, and M.G. Rossmann Structural analyses of Phycodnaviridae and Iridoviridae Acta Crystallog. sect. D 59 2003 2053 2059
29. J. Lepault, J. Dubochet, W. Baschong, and E. Kellenberger Organization of double-stranded DNA in bacteriophages: a study by cryo-electron microscopy of vitrified samples EMBO J. 6 1987 1507 1512
30. N.H. Olson, M. Gingery, F.A. Eiserling, and T.S. Baker The structure of isometric capsids of bacteriophage T4 Virology 279 2001 385 391
31. N.V. Hud, and K.H. Downing Cryoelectron microscopy of lambda phage DNA condensates in vitreous ice: the fine structure of DNA toroids Proc. Natl Acad. Sci. USA 98 2001 14925 14930
32. J. Sambrook, E.F. Fritsch, and T. Maniatis Molecular Cloning, a Laboratory Manual 1989 Cold Spring Harbor Laboratory Press Cold Spring Harbor, NY
33. J. Frank, M. Radermacher, P. Penczek, J. Zhu, Y. Li, and M. Ladjadj SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields J. Struct. Biol. 116 1996 190 199