The AUUCU repeats responsible for spinocerebellar ataxia type 10 form unusual RNA hairpins

Journal of Biological Chemistry

Volumn 280, Issue 32, 2005, Pages 29340-29345

  Handa, Vaishali ^a   Yeh, Herman J C ^a   McPhie, Peter ^a   Usdin, Karen ^a,b  

^a NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES   (United States)

^b NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DISEASE CONTROL; DNA; GENES; HYDROGEN BONDS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; SPECTROSCOPIC ANALYSIS;

CD SPECTROSCOPY; GENE CODING; REPEAT EXPANSION DISEASES; SPINOCEREBELLAR ATAXIA TYPE 10;

RNA;

ATAXIN 1; ATAXIN 10; DOUBLE STRANDED DNA; NUCLEASE S1; RNA; UNCLASSIFIED DRUG;

ALPHA HELIX; AMINO ACID SEQUENCE; ARTICLE; AUTOSOMAL DOMINANT DISORDER; AUUCU REPEAT; CIRCULAR DICHROISM; DNA DETERMINATION; GENETIC TRANSCRIPTION; HYDROGEN BOND; INTRON; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; NUCLEOTIDE REPEAT; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN FOLDING; PROTEIN STRUCTURE; RNA STRUCTURE; SPINOCEREBELLAR ATAXIA TYPE 10; SPINOCEREBELLAR DEGENERATION; STRUCTURE ANALYSIS; ULTRAVIOLET SPECTROSCOPY;

AMINO ACID SEQUENCE; BASE SEQUENCE; CIRCULAR DICHROISM; DNA; HUMANS; HYDROGEN-ION CONCENTRATION; INTRONS; KINETICS; MAGNETIC RESONANCE SPECTROSCOPY; MOLECULAR SEQUENCE DATA; NERVE TISSUE PROTEINS; NUCLEIC ACID CONFORMATION; OLIGONUCLEOTIDES, ANTISENSE; PROTEIN BIOSYNTHESIS; PROTONS; RNA; SPINOCEREBELLAR ATAXIAS; TEMPERATURE; THERMODYNAMICS; TRANSCRIPTION, GENETIC; ULTRAVIOLET RAYS;

ATAXIA;

EID: 23844546925     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M503495200     Document Type: Article

References (33)

1. Zu, L., Figueroa, K. P., Grewal, R., and Pulst, S. M. (1999) Am. J. Hum. Genet. 64, 594-599
2. Matsuura, T., Yamagata, T., Burgess, D. L., Rasmussen, A., Grewal, R. P., Watase, K., Khajavi, M., McCall, A. E., Davis, C. F., Zu, L., Achari, M., Pulst, S. M., Alonso, E., Noebels, J. L., Nelson, D. L., Zoghbi, H. Y., and Ashizawa, T. (2000) Nat. Genet. 26, 191-194
3. Lin, X., and Ashizawa, T. (2003) Cytogenet. Genome Res. 100, 184-188
4. Marz, P., Probst, A., Lang, S., Schwager, M., Rose-John, S., Otten, U., and Ozbek, S. (2004) J. Biol. Chem.
5. Zeitlin, S., Liu, J. P., Chapman, D. L., Papaioannou, V. E., and Efstratiadis, A. (1995) Nat. Genet. 11, 155-163
6. Gusella, J. F., and MacDonald, M. E. (1995) Semin. Cell. Biol. 6, 21-28
7. Jin, P., Zarnescu, D. C., Zhang, F., Pearson, C. E., Lucchesi, J. C., Moses, K., and Warren, S. T. (2003) Neuron 39, 739-747
8. Ranum, L. P., and Day, J. W. (2002) Curr. Opin. Genet. Dev. 12, 266-271
9. Ranum, L. P., and Day, J. W. (2004) Am. J. Hum. Genet. 74, 793-804
10. Napierala, M., and Krzyosiak, W. J. (1997) J. Biol. Chem. 272, 31079-31085
11. Handa, V., Saha, T., and Usdin, K. (2003) Nucleic Acids Res. 31, 6243-6248
12. Sobczak, K., de Mezer, M., Michlewski, G., Krol, J., and Krzyzosiak, W. J. (2003) Nucleic Acids Res. 31, 5469-5482
13. Koch, K. S., and Leffert, H. L. (1998) J. Theor. Biol. 192, 505-514
14. Yeung, M. C., Liu, J., and Lau, A. S. (1996) Proc. Natl. Acad. Sci. U. S. A. 93, 12451-12455
15. Matzke, M. A, and Birchler, J. A. (2005) Nat. Rev. Genet. 6, 24-35
16. Potaman, V. N., Bissler, J. J., Hashem, V. I., Oussatcheva, E. A., Lu, L., Shlyakhtenko, L. S., Lyubchenko, Y. L., Matsuura, T., Ashizawa, T., Leffak, M., Benham, C. J., and Sinden, R. R. (2003) J. Mol. Biol. 326, 1095-1111
17. Hwang, T. L., and Shaka, A. J. (1995) J. Magn. Reson. 112, 275-279
18. States, D. J., Haberkorn, R. A., and Ruben, D. J. (1982) J. Magn. Reson. 48, 286-292
19. Usdin, K., and Grabczyk, E. (2000) Cell Mol. Life Sci. 57, 914-931
20. Lockard, R. E., and Kumar, A. (1981) Nucleic Acids Res. 9, 5125-5140
21. Shen, L. X., Cai, Z., and Tinoco, I., Jr. (1995) FASEB J. 9, 1023-1033
22. Shi, P. Y., Brinton, M. A., Veal, J. M., Zhong, Y. Y., and Wilson, W. D. (1996) Biochemistry 35, 4222-4230
23. Breslauer, K. J. (1986) in Thermodynamic Data for Biochemistry and Biotechnology (Hinz, H.-J., ed) pp. 402-427, Springer-Verlag, New York
24. Cantor, C. R., and Schimmel, P. R. (1980) Biophysical Chemistry, p. 1147, W. H. Freeman & Co., San Francisco
25. Kierzek, R., Burkard, M. E., and Turner, D. H. (1999) Biochemistry 38, 14214-14223
26. SantaLucia, J., Jr., Kierzek, R., and Turner, D. H. (1991) Biochemistry 30, 8242-8251
27. Burkard, M. E., Turner, D. H., and Tinoco, I., Jr. (1999) in The RNA World (Gesteland, R. F., Cech, T. R., and Atkins, J. F., eds) pp. 675-680, Cold Spring Harbor Laboratory Press, Plainview, NY
28. Heidenfelder, B. L., Makhov, A. M., and Topal, M. D. (2003) J. Biol. Chem. 278, 2425-2431
29. Mitas, M. (1997) Nucleic Acids Res. 25, 2245-2254
30. Miller, J. W., Urbinati, C. R., Teng-Umnuay, P., Stenberg, M. G., Byrne, B. J., Thornton, C. A., and Swanson, M. S. (2000) EMBO J. 19, 4439-4448
31. Mankodi, A., Teng-Umnuay, P., Krym, M., Henderson, D., Swanson, M., and Thornton, C. A. (2003) Ann. Neurol. 54, 760-768
32. Arndt, K. M., and Chamberlin, M. J. (1990) J. Mol. Biol. 213, 79-108
33. Buratti, E., and Baralle, F. E. (2004) Mol. Cell. Biol. 24, 10505-10514