-
2
-
-
0002759539
-
Unsupervised learning of multiple motifs in biopolymers using expectation maximization
-
Bailey, T.L., and Elkan, C. 1995. Unsupervised learning of multiple motifs in biopolymers using expectation maximization. Machine Learning J. 21, 51-83.
-
(1995)
Machine Learning J.
, vol.21
, pp. 51-83
-
-
Bailey, T.L.1
Elkan, C.2
-
3
-
-
0001360583
-
A simple hyper-geometric approach for discovering putative transcription factor binding sites
-
Barash, Y., Bejerano, G., and Friedman, N. 2001. A simple hyper-geometric approach for discovering putative transcription factor binding sites. Proc. WABI 1, 278-293.
-
(2001)
Proc. WABI
, vol.1
, pp. 278-293
-
-
Barash, Y.1
Bejerano, G.2
Friedman, N.3
-
4
-
-
2442438285
-
Specific protein binding to far upstream activating sequences in polymerase II promoters
-
Bram, R.J., and Kornberg, R.D. 1984. Specific protein binding to far upstream activating sequences in polymerase II promoters. Proc. Natl. Acad. Sci. 82, 43-47.
-
(1984)
Proc. Natl. Acad. Sci.
, vol.82
, pp. 43-47
-
-
Bram, R.J.1
Kornberg, R.D.2
-
5
-
-
0022684387
-
A GAL family of upstream activating sequences in yeast: Roles in both induction and repression of transcription
-
Bram, R.J., Lue, N.F., and Kornberg, R.D. 1986. A GAL family of upstream activating sequences in yeast: Roles in both induction and repression of transcription. EMBO J. 5, 603-608.
-
(1986)
EMBO J.
, vol.5
, pp. 603-608
-
-
Bram, R.J.1
Lue, N.F.2
Kornberg, R.D.3
-
6
-
-
0036110853
-
Finding motifs using random projections
-
Buhler, J., and Tompa, M. 2002. Finding motifs using random projections. J. Comp. Biol. 9, 225-242.
-
(2002)
J. Comp. Biol.
, vol.9
, pp. 225-242
-
-
Buhler, J.1
Tompa, M.2
-
7
-
-
33645376981
-
Finding motifs from all sequences with and without binding sites
-
Submitted
-
Chin, F.Y.L., and Leung, H.C.M. 2005a. Finding motifs from all sequences with and without binding sites. Submitted to CSB.
-
(2005)
CSB
-
-
Chin, F.Y.L.1
Leung, H.C.M.2
-
8
-
-
33645339276
-
Voting algorithms for discovering long motifs
-
Chin, F.Y.L., and Leung, H.C.M. 2005b. Voting algorithms for discovering long motifs. Proc. APBC 3, 261-271.
-
(2005)
Proc. APBC
, vol.3
, pp. 261-271
-
-
Chin, F.Y.L.1
Leung, H.C.M.2
-
9
-
-
0034628901
-
Computational identification of cis-regulatory elements associated with groups
-
Hughes, J.D., Estep, P.W., Tavazoie, S., and Church, G.M. 2000. Computational identification of cis-regulatory elements associated with groups. J. Mol. Biol. 296(5), 1205-1214.
-
(2000)
J. Mol. Biol.
, vol.296
, Issue.5
, pp. 1205-1214
-
-
Hughes, J.D.1
Estep, P.W.2
Tavazoie, S.3
Church, G.M.4
-
10
-
-
0035156258
-
Assessing clusters and motifs from gene expression data
-
Jakt, L.M., Cao, L., Cheah, K.S.E., and Smith, O.K. 2001. Assessing clusters and motifs from gene expression data. Genome Res. 11, 112-123.
-
(2001)
Genome Res.
, vol.11
, pp. 112-123
-
-
Jakt, L.M.1
Cao, L.2
Cheah, K.S.E.3
Smith, O.K.4
-
12
-
-
0027912333
-
Detecting subtle sequence signals: A Gibbs sampling strategy
-
Lawrence, C., Altschul, S., Boguski, M., Liu, J., Neuwald, A., and Wootton, J. 1993. Detecting subtle sequence signals: A Gibbs sampling strategy. Science 262, 208-214.
-
(1993)
Science
, vol.262
, pp. 208-214
-
-
Lawrence, C.1
Altschul, S.2
Boguski, M.3
Liu, J.4
Neuwald, A.5
Wootton, J.6
-
13
-
-
84950424966
-
Bayesian motifs for multiple local sequence alignment and Gibbs sampling strategies
-
Liu, J.S., Neuwald, A.F., and Lawrence, C.E. 1995. Bayesian motifs for multiple local sequence alignment and Gibbs sampling strategies. J. Am. Statist. Assoc. 90(432), 1156-1170.
-
(1995)
J. Am. Statist. Assoc.
, vol.90
, Issue.432
, pp. 1156-1170
-
-
Liu, J.S.1
Neuwald, A.F.2
Lawrence, C.E.3
-
14
-
-
0025334921
-
Transcriptional control by galactose of a yeast gene encoding a protein homologous to mammalian aldo/keto reductases
-
Magdolen, V., Occhsner, U., Trommler, P., and Bandlow, W. 1990. Transcriptional control by galactose of a yeast gene encoding a protein homologous to mammalian aldo/keto reductases. Gene 90, 105-114.
-
(1990)
Gene
, vol.90
, pp. 105-114
-
-
Magdolen, V.1
Occhsner, U.2
Trommler, P.3
Bandlow, W.4
-
16
-
-
0034704248
-
Genome-wide location and function of DNA binding proteins
-
Ren, B., Robert, F., Wyrick, J.J., Aparicio, O., Jennings, E.G., Simon, I., Zeitlinger, J., Schreiber, J., Hannett, N., Kanin, E., Volkert, T.L., Wilson, C.J., Bell, S.P., and Young, R.A. 1993. Genome-wide location and function of DNA binding proteins. Science 290, 2306-2309.
-
(1993)
Science
, vol.290
, pp. 2306-2309
-
-
Ren, B.1
Robert, F.2
Wyrick, J.J.3
Aparicio, O.4
Jennings, E.G.5
Simon, I.6
Zeitlinger, J.7
Schreiber, J.8
Hannett, N.9
Kanin, E.10
Volkert, T.L.11
Wilson, C.J.12
Bell, S.P.13
Young, R.A.14
-
17
-
-
0034603061
-
Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles
-
Roberts, C.J., Nelson, B., Marton, M.J., Stoughton, R., Meyer, M.R., Bennett, H.A., He, Y., Dai, H., Walker, W.L., Hughes, T.R., Tyers, M., Boone, C., and Friend, S.H. 2000. Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles. Science 287, 873-880.
-
(2000)
Science
, vol.287
, pp. 873-880
-
-
Roberts, C.J.1
Nelson, B.2
Marton, M.J.3
Stoughton, R.4
Meyer, M.R.5
Bennett, H.A.6
He, Y.7
Dai, H.8
Walker, W.L.9
Hughes, T.R.10
Tyers, M.11
Boone, C.12
Friend, S.H.13
-
18
-
-
0031787969
-
Finding DNA regulatory motifs within unaligned non-coding sequences clustered by whole-genome mRNA quantitation
-
Roth, P.P., Hughes, J.D., Estep, P.W., and Church, G.M. 1998. Finding DNA regulatory motifs within unaligned non-coding sequences clustered by whole-genome mRNA quantitation. Nature Biotechnol. 16(10), 939-945.
-
(1998)
Nature Biotechnol.
, vol.16
, Issue.10
, pp. 939-945
-
-
Roth, P.P.1
Hughes, J.D.2
Estep, P.W.3
Church, G.M.4
-
19
-
-
0036376097
-
From promoter sequences to expression: A probabilistic framework
-
Segal, E., Barash, Y., Simon, I., Friedman, N., and Koller, D. 2002. From promoter sequences to expression: A probabilistic framework. Proc. RECOMB 6, 263-272.
-
(2002)
Proc. RECOMB
, vol.6
, pp. 263-272
-
-
Segal, E.1
Barash, Y.2
Simon, I.3
Friedman, N.4
Koller, D.5
-
20
-
-
2442604453
-
A discriminative model for identifying spatial cis-regulatory modules
-
Segal E., and Sharan, R. 2004. A discriminative model for identifying spatial cis-regulatory modules. Proc. RECOMB 8, 141-149.
-
(2004)
Proc. RECOMB
, vol.8
, pp. 141-149
-
-
Segal, E.1
Sharan, R.2
-
21
-
-
0242690451
-
Discriminative motifs
-
Sinha, S. 2003. Discriminative motifs. J. Comp. Biol. 10, 599-616.
-
(2003)
J. Comp. Biol.
, vol.10
, pp. 599-616
-
-
Sinha, S.1
|