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Volumn 249, Issue 2, 2005, Pages 233-240

Physical map of the Azoarcus sp. strain BH72 genome based on a bacterial artificial chromosome library as a platform for genome sequencing and functional analysis

Author keywords

Azoarcus; BAC library; Functional genomics; Genome sequencing; Physical map

Indexed keywords

ARTICLE; AZOARCUS; BACTERIAL GENOME; BACTERIAL STRAIN; CHROMOSOME ANALYSIS; CONTROLLED STUDY; GENE FUNCTION; GENE LIBRARY; GENE MAPPING; GENE SEQUENCE; MARKER GENE; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT; PRIORITY JOURNAL;

EID: 23744472460     PISSN: 03781097     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.femsle.2005.06.015     Document Type: Article
Times cited : (12)

References (41)
  • 1
    • 0001316539 scopus 로고
    • Close association of Azospirillum and diazotrophic rods with different root zones of Kallar grass
    • B. Reinhold, T. Hurek, E.-G. Niemann, and I. Fendrik Close association of Azospirillum and diazotrophic rods with different root zones of Kallar grass Appl. Environ. Microbiol. 52 1986 520 526
    • (1986) Appl. Environ. Microbiol. , vol.52 , pp. 520-526
    • Reinhold, B.1    Hurek, T.2    Niemann, E.-G.3    Fendrik, I.4
  • 2
    • 0027169610 scopus 로고
    • Azoarcus gen. nov., nitrogen-fixing proteobacteria associated with roots of Kallar grass (Leptochloa fusca (L.) Kunth) and description of two species Azoarcus indigens sp. nov. and Azoarcus communis sp. nov
    • B. Reinhold-Hurek, T. Hurek, M. Gillis, B. Hoste, M. Vancanneyt, K. Kersters, and J. De Ley Azoarcus gen. nov., nitrogen-fixing proteobacteria associated with roots of Kallar grass (Leptochloa fusca (L.) Kunth) and description of two species Azoarcus indigens sp. nov. and Azoarcus communis sp. nov Int. J. Syst. Bacteriol. 43 1993 574 584
    • (1993) Int. J. Syst. Bacteriol. , vol.43 , pp. 574-584
    • Reinhold-Hurek, B.1    Hurek, T.2    Gillis, M.3    Hoste, B.4    Vancanneyt, M.5    Kersters, K.6    De Ley, J.7
  • 3
    • 0031924813 scopus 로고    scopus 로고
    • Infection and colonization of sugar cane and other graminaceous plants by endophytic diazotrophs
    • E.K. James, and F.L. Olivares Infection and colonization of sugar cane and other graminaceous plants by endophytic diazotrophs Crit. Rev. Plant Sci. 17 1998 77 119
    • (1998) Crit. Rev. Plant Sci. , vol.17 , pp. 77-119
    • James, E.K.1    Olivares, F.L.2
  • 4
    • 0031902731 scopus 로고    scopus 로고
    • Interactions of gramineous plants with Azoarcus spp. and other diazotrophs: Identification, localization and perspectives to study their function
    • B. Reinhold-Hurek, and T. Hurek Interactions of gramineous plants with Azoarcus spp. and other diazotrophs: Identification, localization and perspectives to study their function Crit. Rev. Plant Sci. 17 1998 29 54
    • (1998) Crit. Rev. Plant Sci. , vol.17 , pp. 29-54
    • Reinhold-Hurek, B.1    Hurek, T.2
  • 6
    • 0031966083 scopus 로고    scopus 로고
    • Life in grasses: Diazotrophic endophytes
    • B. Reinhold-Hurek, and T. Hurek Life in grasses: diazotrophic endophytes Trends Microbiol. 6 1998 139 144
    • (1998) Trends Microbiol. , vol.6 , pp. 139-144
    • Reinhold-Hurek, B.1    Hurek, T.2
  • 8
    • 0034023558 scopus 로고    scopus 로고
    • Reassessment of the taxonomic structure of the diazotrophic genus Azoarcus sensu lato and description of three new genera and species, Azovibrio restrictus gen. nov., sp. nov., Azospira oryzae gen. nov., sp. nov, and Azonexus funguphilus gen. nov., sp. nov
    • B. Reinhold-Hurek, and T. Hurek Reassessment of the taxonomic structure of the diazotrophic genus Azoarcus sensu lato and description of three new genera and species, Azovibrio restrictus gen. nov., sp. nov., Azospira oryzae gen. nov., sp. nov, and Azonexus funguphilus gen. nov., sp. nov Int. J. Syst. Evol. Microbiol. 50 2000 649 659
    • (2000) Int. J. Syst. Evol. Microbiol. , vol.50 , pp. 649-659
    • Reinhold-Hurek, B.1    Hurek, T.2
  • 9
  • 10
    • 0035987085 scopus 로고    scopus 로고
    • Azoarcus grass endophytes contribute fixed nitrogen to the plant in an unculturable state
    • T. Hurek, L. Handley, B. Reinhold-Hurek, and Y. Piché Azoarcus grass endophytes contribute fixed nitrogen to the plant in an unculturable state Mol. Plant-Microbe In. 15 2002 233 242
    • (2002) Mol. Plant-Microbe In. , vol.15 , pp. 233-242
    • Hurek, T.1    Handley, L.2    Reinhold-Hurek, B.3    Piché, Y.4
  • 11
    • 0035119414 scopus 로고    scopus 로고
    • 2 incorporation following inoculation of sterile plants with Acetobacter diazotrophicus wild-type and nif mutant strains
    • 2 incorporation following inoculation of sterile plants with Acetobacter diazotrophicus wild-type and nif mutant strains Mol. Plant-Microbe In. 14 2001 358 366
    • (2001) Mol. Plant-Microbe In. , vol.14 , pp. 358-366
    • Sevilla, M.1    Burris, R.H.2    Gunapala, N.3    Kennedy, C.4
  • 12
    • 0030814221 scopus 로고    scopus 로고
    • Divergence in nitrogenases of Azoarcus spp., Proteobacteria of the β-subclass
    • T. Hurek, T. Egener, and B. Reinhold-Hurek Divergence in nitrogenases of Azoarcus spp., Proteobacteria of the β-subclass J. Bacteriol. 179 1997 4172 4178
    • (1997) J. Bacteriol. , vol.179 , pp. 4172-4178
    • Hurek, T.1    Egener, T.2    Reinhold-Hurek, B.3
  • 13
    • 0032798572 scopus 로고    scopus 로고
    • Endophytic expression of nif genes of Azoarcus sp. strain BH72 in rice roots
    • T. Egener, T. Hurek, and B. Reinhold-Hurek Endophytic expression of nif genes of Azoarcus sp. strain BH72 in rice roots Mol. Plant-Microbe In. 12 1999 813 819
    • (1999) Mol. Plant-Microbe In. , vol.12 , pp. 813-819
    • Egener, T.1    Hurek, T.2    Reinhold-Hurek, B.3
  • 16
    • 0344065973 scopus 로고    scopus 로고
    • Azoarcus sp. strain BH72 as a model for nitrogen-fixing grass endophytes
    • T. Hurek, and B. Reinhold-Hurek Azoarcus sp. strain BH72 as a model for nitrogen-fixing grass endophytes J. Biotechnol. 106 2003 169 178
    • (2003) J. Biotechnol. , vol.106 , pp. 169-178
    • Hurek, T.1    Reinhold-Hurek, B.2
  • 17
    • 0034844163 scopus 로고    scopus 로고
    • Bacterial artificial chromosome-based physical map of the rice genome constructed by restriction fingerprint analysis
    • Q. Tao, Y.L. Chang, J. Wang, H. Chen, M.N. Islam-Faridi, C. Scheuring, B. Wang, D.M. Stelly, and H.B. Zhang Bacterial artificial chromosome-based physical map of the rice genome constructed by restriction fingerprint analysis Genetics 158 2001 1711 1724
    • (2001) Genetics , vol.158 , pp. 1711-1724
    • Tao, Q.1    Chang, Y.L.2    Wang, J.3    Chen, H.4    Islam-Faridi, M.N.5    Scheuring, C.6    Wang, B.7    Stelly, D.M.8    Zhang, H.B.9
  • 20
    • 0026703169 scopus 로고
    • Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector
    • H. Shizuya, B. Birren, U.J. Kim, V. Mancino, T. Slepak, Y. Tachiiri, and M. Simon Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector Proc. Natl. Acad. Sci. USA 89 1992 8794 8797
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 8794-8797
    • Shizuya, H.1    Birren, B.2    Kim, U.J.3    Mancino, V.4    Slepak, T.5    Tachiiri, Y.6    Simon, M.7
  • 21
    • 0031239012 scopus 로고    scopus 로고
    • Physical mapping of the rice genome with BACs
    • H.B. Zhang, and R.A. Wing Physical mapping of the rice genome with BACs Plant Mol. Biol. 35 1997 115 127
    • (1997) Plant Mol. Biol. , vol.35 , pp. 115-127
    • Zhang, H.B.1    Wing, R.A.2
  • 22
    • 0025295967 scopus 로고
    • Differential plasmid rescue from transgenic mouse DNAs into Escherichia coli methylation-restriction mutants
    • S.G. Grant, J. Jessee, F.R. Bloom, and D. Hanahan Differential plasmid rescue from transgenic mouse DNAs into Escherichia coli methylation-restriction mutants Proc. Natl. Acad. Sci. USA 87 1990 4645 4649
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 4645-4649
    • Grant, S.G.1    Jessee, J.2    Bloom, F.R.3    Hanahan, D.4
  • 23
    • 0035289401 scopus 로고    scopus 로고
    • The development and applications of the bacterial artificial chromosome cloning system
    • H. Shizuya, and H. Kouros-Mehr The development and applications of the bacterial artificial chromosome cloning system Keio J. Med. 50 2001 26 30
    • (2001) Keio J. Med. , vol.50 , pp. 26-30
    • Shizuya, H.1    Kouros-Mehr, H.2
  • 24
    • 0027428008 scopus 로고
    • Cloning, expression in Escherichia coli, and characterization of cellulolytic enzymes of Azoarcus sp., a root-invading diazotroph
    • B. Reinhold-Hurek, T. Hurek, M. Claeyssens, and M. Van Montagu Cloning, expression in Escherichia coli, and characterization of cellulolytic enzymes of Azoarcus sp., a root-invading diazotroph J. Bacteriol. 175 1993 7056 7065
    • (1993) J. Bacteriol. , vol.175 , pp. 7056-7065
    • Reinhold-Hurek, B.1    Hurek, T.2    Claeyssens, M.3    Van Montagu, M.4
  • 26
    • 0030884943 scopus 로고    scopus 로고
    • Marked improvement of PAC and BAC cloning is achieved using electroelution of pulsed-field gel-separated partial digests of genomic DNA
    • S.J. Strong, Y. Ohta, G.W. Litman, and C.T. Amemiya Marked improvement of PAC and BAC cloning is achieved using electroelution of pulsed-field gel-separated partial digests of genomic DNA Nucl. Acids Res. 25 1997 3959 3961
    • (1997) Nucl. Acids Res. , vol.25 , pp. 3959-3961
    • Strong, S.J.1    Ohta, Y.2    Litman, G.W.3    Amemiya, C.T.4
  • 28
    • 0027430312 scopus 로고
    • 16S rRNA-targeted polymerase chain reaction and oligonucleotide hybridization to screen for Azoarcus spp., grass-associated diazotrophs
    • T. Hurek, S. Burggraf, C.R. Woese, and B. Reinhold-Hurek 16S rRNA-targeted polymerase chain reaction and oligonucleotide hybridization to screen for Azoarcus spp., grass-associated diazotrophs Appl. Environ. Microbiol. 59 1993 3816 3824
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 3816-3824
    • Hurek, T.1    Burggraf, S.2    Woese, C.R.3    Reinhold-Hurek, B.4
  • 29
    • 0028840504 scopus 로고
    • Induction of complex intracytoplasmic membranes related to nitrogen fixation in Azoarcus sp. BH72
    • T. Hurek, M. Van Montagu, E. Kellenberger, and B. Reinhold-Hurek Induction of complex intracytoplasmic membranes related to nitrogen fixation in Azoarcus sp. BH72 Mol. Microbiol. 18 1995 225 236
    • (1995) Mol. Microbiol. , vol.18 , pp. 225-236
    • Hurek, T.1    Van Montagu, M.2    Kellenberger, E.3    Reinhold-Hurek, B.4
  • 30
    • 0033623470 scopus 로고    scopus 로고
    • II-like signal transmitter proteins in the diazotroph Azoarcus sp. BH72
    • II-like signal transmitter proteins in the diazotroph Azoarcus sp. BH72 Mol. Microbiol. 38 2000 276 288
    • (2000) Mol. Microbiol. , vol.38 , pp. 276-288
    • Martin, D.1    Hurek, T.2    Reinhold-Hurek, B.3
  • 31
    • 0031696506 scopus 로고    scopus 로고
    • Type IV pili are involved in plant-microbe and fungus-microbe interactions
    • J. Dörr, T. Hurek, and B. Reinhold-Hurek Type IV pili are involved in plant-microbe and fungus-microbe interactions Mol. Microbiol. 30 1998 7 17
    • (1998) Mol. Microbiol. , vol.30 , pp. 7-17
    • Dörr, J.1    Hurek, T.2    Reinhold-Hurek, B.3
  • 32
    • 0026599998 scopus 로고
    • Self-splicing introns in tRNA genes of widely divergent bacteria
    • B. Reinhold-Hurek, and D.A. Shub Self-splicing introns in tRNA genes of widely divergent bacteria Nature 357 1992 173 176
    • (1992) Nature , vol.357 , pp. 173-176
    • Reinhold-Hurek, B.1    Shub, D.A.2
  • 33
    • 0030613611 scopus 로고    scopus 로고
    • 2-fixing plant- and fungus-associated Azoarcus species by PCR-based genomic fingerprints
    • 2-fixing plant- and fungus-associated Azoarcus species by PCR-based genomic fingerprints Appl. Environ. Microbiol. 63 1997 4331 4339
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4331-4339
    • Hurek, T.1    Wagner, B.2    Reinhold-Hurek, B.3
  • 35
    • 0031923751 scopus 로고    scopus 로고
    • Use of a Mycobacterium tuberculosis H37Rv bacterial artificial chromosome library for genome mapping, sequencing, and comparative genomics
    • R. Brosch, S.V. Gordon, A. Billault, T. Garnier, K. Eiglmeier, C. Soravito, B.G. Barrell, and S.T. Cole Use of a Mycobacterium tuberculosis H37Rv bacterial artificial chromosome library for genome mapping, sequencing, and comparative genomics Infect. Immun. 66 1998 2221 2229
    • (1998) Infect. Immun. , vol.66 , pp. 2221-2229
    • Brosch, R.1    Gordon, S.V.2    Billault, A.3    Garnier, T.4    Eiglmeier, K.5    Soravito, C.6    Barrell, B.G.7    Cole, S.T.8
  • 36
    • 0036786509 scopus 로고    scopus 로고
    • Bacterial artificial chromosome-based comparative genomic analysis identifies Mycobacterium microti as a natural ESAT-6 deletion mutant
    • P. Brodin, K. Eiglmeier, M. Marmiesse, A. Billault, T. Garnier, S. Niemann, S.T. Cole, and R. Brosch Bacterial artificial chromosome-based comparative genomic analysis identifies Mycobacterium microti as a natural ESAT-6 deletion mutant Infect. Immun. 70 2002 5568 5578
    • (2002) Infect. Immun. , vol.70 , pp. 5568-5578
    • Brodin, P.1    Eiglmeier, K.2    Marmiesse, M.3    Billault, A.4    Garnier, T.5    Niemann, S.6    Cole, S.T.7    Brosch, R.8
  • 37
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • E. Stackebrandt M. Goodfellow Wiley Chichester
    • D.J. Lane 16S/23S rRNA sequencing E. Stackebrandt M. Goodfellow Nucleic Acid Techniques in Bacterial Systematics Vols. 115-175 1991 Wiley Chichester
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , vol.115-175
    • Lane, D.J.1
  • 38
    • 0030024050 scopus 로고    scopus 로고
    • A physical and genetic map of Neisseria meningitidis B1940
    • M. Gäher, K. Einsiedler, T. Crass, and W. Bautsch A physical and genetic map of Neisseria meningitidis B1940 Mol. Microbiol. 19 1996 249 259
    • (1996) Mol. Microbiol. , vol.19 , pp. 249-259
    • Gäher, M.1    Einsiedler, K.2    Crass, T.3    Bautsch, W.4
  • 41
    • 0034074410 scopus 로고    scopus 로고
    • RRNA operon copy number reflects ecological strategies of bacteria
    • J.A. Klappenbach, J.M. Dunbar, and T.M. Schmidt rRNA operon copy number reflects ecological strategies of bacteria Appl. Environ. Microbiol. 66 2000 1328 1333
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 1328-1333
    • Klappenbach, J.A.1    Dunbar, J.M.2    Schmidt, T.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.