-
1
-
-
0021759223
-
A new experimental approach for studying the association between RNA polymerase and the tet promoter of pBR322
-
Bertrand-Burggraf E, Lefévre JF, Daune M. (1984) A new experimental approach for studying the association between RNA polymerase and the tet promoter of pBR322. Nucleic Acids Res.; 12: 1697-706.
-
(1984)
Nucleic Acids Res
, vol.12
, pp. 1697-1706
-
-
Bertrand-Burggraf, E.1
Lefévre, J.F.2
Daune, M.3
-
3
-
-
0016748261
-
A procedure for the rapid, large-scale purification of Escherichia coli DNA-dependent RNA polymerase involving Polymin P precipitation and DNA-cellulose chromatography
-
Burgess RR, Jendrisak JJ. (1975) A procedure for the rapid, large-scale purification of Escherichia coli DNA-dependent RNA polymerase involving Polymin P precipitation and DNA-cellulose chromatography. Biochemistry.; 14: 4634-8.
-
(1975)
Biochemistry
, vol.14
, pp. 4634-4638
-
-
Burgess, R.R.1
Jendrisak, J.J.2
-
4
-
-
0020645071
-
Isolation of bacterial and bacteriophage RNA polymerases and their use in synthesis of RNA in vitro
-
Chamberlin M, Kingston R, Gilman M, Wiggs J, deVera A. (1983) Isolation of bacterial and bacteriophage RNA polymerases and their use in synthesis of RNA in vitro. Methods Enzymol.; 101: 540-68.
-
(1983)
Methods Enzymol
, vol.101
, pp. 540-568
-
-
Chamberlin, M.1
Kingston, R.2
Gilman, M.3
Wiggs, J.4
DeVera, A.5
-
5
-
-
0037756788
-
Functional interaction between RNA polymerase alpha subunit C-terminal domain and sigma 70 with UP-element- and activator-dependent transcription
-
Chen H, Tang H, Ebright RH. (2003) Functional interaction between RNA polymerase alpha subunit C-terminal domain and sigma 70 with UP-element- and activator-dependent transcription. Mol Cell.; 11: 1621-33.
-
(2003)
Mol Cell
, vol.11
, pp. 1621-1633
-
-
Chen, H.1
Tang, H.2
Ebright, R.H.3
-
6
-
-
0033567215
-
Bacterial promoter architecture: Subsite structure of UP elements and interaction with the carboxy-terminal domain of the RNA polymerase α subunit
-
Estrem ST, Ross W, Gaal T, Chen ZW, Niu W, Ebright RH. (1999) Bacterial promoter architecture: subsite structure of UP elements and interaction with the carboxy-terminal domain of the RNA polymerase α subunit. Genes Dev.; 13: 2134-47.
-
(1999)
Genes Dev
, vol.13
, pp. 2134-2147
-
-
Estrem, S.T.1
Ross, W.2
Gaal, T.3
Chen, Z.W.4
Niu, W.5
Ebright, R.H.6
-
8
-
-
0028931709
-
B-DNA twisting correlates with base-pair morphology
-
Gorin AA, Zhurkin VB, Olson W. (1995) B-DNA twisting correlates with base-pair morphology. J Mol Biol.; 247: 34-48.
-
(1995)
J Mol Biol
, vol.247
, pp. 34-48
-
-
Gorin, A.A.1
Zhurkin, V.B.2
Olson, W.3
-
9
-
-
0037073077
-
Promoter clearance and escape in prokaryotes
-
Hsu L. (2002) Promoter clearance and escape in prokaryotes. Biochim Biophys Acta.; 1577: 191-207.
-
(2002)
Biochim Biophys Acta
, vol.1577
, pp. 191-207
-
-
Hsu, L.1
-
11
-
-
0042377197
-
n tracts within the UP element proximal subsite of a model promoter on kinetics of open complex formation by Escherichia coli RNA polymerase
-
n tracts within the UP element proximal subsite of a model promoter on kinetics of open complex formation by Escherichia coli RNA polymerase. Acta Biochim Polon.; 49: 659-69.
-
(2002)
Acta Biochim Polon
, vol.49
, pp. 659-669
-
-
Kolasa, I.K.1
Łoziński, T.2
Wierzchowski, K.L.3
-
12
-
-
0036074510
-
Protein-DNA interaction: Amino-acid conservation and the effects of mutations on binding specificity
-
Luscombe NM, Thornton JM. (2002) Protein-DNA interaction: amino-acid conservation and the effects of mutations on binding specificity. J Mol Biol.; 320: 991-1009.
-
(2002)
J Mol Biol
, vol.320
, pp. 991-1009
-
-
Luscombe, N.M.1
Thornton, J.M.2
-
13
-
-
0029689388
-
n DNA bending sequences in the -35 and spacer domains of a consensus-like Escherichia coli promoter on its strength in vivo and gross structure of the open complex in vitro
-
n DNA bending sequences in the -35 and spacer domains of a consensus-like Escherichia coli promoter on its strength in vivo and gross structure of the open complex in vitro. Acta Biochim Polon.; 43: 265-80.
-
(1996)
Acta Biochim Polon
, vol.43
, pp. 265-280
-
-
Łoziński, T.1
Wierzchowski, K.L.2
-
14
-
-
0025847425
-
Effect of DNA bending in various regions of the consensus-like Escherichia coli promoter on its strength in vivo and structure of the open complex in vitro
-
Łoziński T, Adrych-Rozek K, Markiewicz WT, Wierzchowski KL. (1991) Effect of DNA bending in various regions of the consensus-like Escherichia coli promoter on its strength in vivo and structure of the open complex in vitro. Nucleic Acids Res.; 19: 2947-53.
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 2947-2953
-
-
Łoziński, T.1
Adrych-Rozek, K.2
Markiewicz, W.T.3
Wierzchowski, K.L.4
-
15
-
-
0035830968
-
Solution structure of an A-tract DNA bend
-
MacDonald D, Herbert K, Zhang X, Pologruto T, Lu P. (2001) Solution structure of an A-tract DNA bend. J Mol Biol.; 306: 1081-98.
-
(2001)
J Mol Biol
, vol.306
, pp. 1081-1098
-
-
MacDonald, D.1
Herbert, K.2
Zhang, X.3
Pologruto, T.4
Lu, P.5
-
16
-
-
0025785249
-
Development of RNA polymerase-promoter contacts during open complex formation
-
Mecsas J, Cowing DW, Gross CA. (1991) Development of RNA polymerase-promoter contacts during open complex formation. J Mol Biol.; 220: 585-97.
-
(1991)
J Mol Biol
, vol.220
, pp. 585-597
-
-
Mecsas, J.1
Cowing, D.W.2
Gross, C.A.3
-
17
-
-
18344371347
-
Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex
-
Mekler V, Kortkhonija K, Mukhopadhyay J, Knight J, Revyakin A, Kapanidis AN, Niu W, Ebright YW, Levy R, Ebright RH. (2002) Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex. Cell.; 108, 599-614.
-
(2002)
Cell
, vol.108
, pp. 599-614
-
-
Mekler, V.1
Kortkhonija, K.2
Mukhopadhyay, J.3
Knight, J.4
Revyakin, A.5
Kapanidis, A.N.6
Niu, W.7
Ebright, Y.W.8
Levy, R.9
Ebright, R.H.10
-
18
-
-
0033579408
-
2+ binding isotherms for nucleic acids using Poisson-Boltzmann theory
-
2+ binding isotherms for nucleic acids using Poisson-Boltzmann theory. J Mol Biol.; 294: 1135-47.
-
(1999)
J Mol Biol
, vol.294
, pp. 1135-1147
-
-
Misra, V.K.1
Draper, D.E.2
-
19
-
-
0037123602
-
Structural basis of transcription initiation: An RNA polymerase holoenzyme-DNA complex
-
Murakami KS, Masuda S, Campbell E, Muzzin O, Darst SA. (2002) Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex. Science.; 296: 1285-90.
-
(2002)
Science
, vol.296
, pp. 1285-1290
-
-
Murakami, K.S.1
Masuda, S.2
Campbell, E.3
Muzzin, O.4
Darst, S.A.5
-
20
-
-
0034625251
-
Structural organization of the RNA polymerase-promotor open complex
-
Naryshkin N, Revyakin A, Kim Y, Mekler V, Ebright RH. (2000) Structural organization of the RNA polymerase-promotor open complex. Cell.; 101: 601-11.
-
(2000)
Cell
, vol.101
, pp. 601-611
-
-
Naryshkin, N.1
Revyakin, A.2
Kim, Y.3
Mekler, V.4
Ebright, R.H.5
-
21
-
-
0023513912
-
The structure of an oligo(dA)·oligo(dT) tract and its biological implications
-
Nelson HCM, Finch JT, Luisi BF, Klug A. (1987) The structure of an oligo(dA)·oligo(dT) tract and its biological implications. Nature (London).; 330: 305-17.
-
(1987)
Nature (London)
, vol.330
, pp. 305-317
-
-
Nelson, H.C.M.1
Finch, J.T.2
Luisi, B.F.3
Klug, A.4
-
22
-
-
0039765388
-
Structural studies of lacUV5-RNA polymerase interactions in vitro
-
Noel RJ, Reznikoff WS. (2000) Structural studies of lacUV5-RNA polymerase interactions in vitro. J Biol Chem.; 275: 2708-12.
-
(2000)
J Biol Chem
, vol.275
, pp. 2708-2712
-
-
Noel, R.J.1
Reznikoff, W.S.2
-
24
-
-
0021840415
-
R promoter interaction. Assignment of the kinetic steps corresponding to protein conformational change and DNA opening
-
R promoter interaction. Assignment of the kinetic steps corresponding to protein conformational change and DNA opening. J Mol Biol.; 184: 441-53.
-
(1985)
J Mol Biol
, vol.184
, pp. 441-453
-
-
Roe, J.-H.1
Burgess, R.R.2
Record Jr., M.T.3
-
25
-
-
0035281992
-
Fine structure of E. coli RNA polymerase-promoter interactions: A subunit binding to the UP element minor groove
-
Ross W, Ernst A, Gourse RL. (2001) Fine structure of E. coli RNA polymerase-promoter interactions: a subunit binding to the UP element minor groove. Genes Dev.; 15: 491-506.
-
(2001)
Genes Dev
, vol.15
, pp. 491-506
-
-
Ross, W.1
Ernst, A.2
Gourse, R.L.3
-
26
-
-
0038522852
-
An intersubunit contact stimulating transcription initiation by E. coli RNA polymerase: Interaction of the α C-terminal domain and σ region 4
-
Ross W, Schneider DA, Paul BJ, Mertens A, Gourse RL. (2003) An intersubunit contact stimulating transcription initiation by E. coli RNA polymerase: interaction of the α C-terminal domain and σ region 4. Genes Dev.; 17: 1293-307.
-
(2003)
Genes Dev
, vol.17
, pp. 1293-1307
-
-
Ross, W.1
Schneider, D.A.2
Paul, B.J.3
Mertens, A.4
Gourse, R.L.5
-
27
-
-
0141754865
-
Probing of contacts of oligonucleotide phosphate groups from the non-template strand of lacUV5 promoter with RNA polymerase of E. coli by regioselective crosslinking
-
Rudakova EA, Ivanovskaya MG, Kozlov MV, Khorotonenko MV, Oretskaya TS, Nikiforov VG. (2000) Probing of contacts of oligonucleotide phosphate groups from the non-template strand of lacUV5 promoter with RNA polymerase of E. coli by regioselective crosslinking. Biokhimija.; 65: 753-64.
-
(2000)
Biokhimija
, vol.65
, pp. 753-764
-
-
Rudakova, E.A.1
Ivanovskaya, M.G.2
Kozlov, M.V.3
Khorotonenko, M.V.4
Oretskaya, T.S.5
Nikiforov, V.G.6
-
30
-
-
0025369026
-
Topography of intermediates in transcription initiation of E. coli
-
Schickor P, Metzger W, Werel W, Lederer H, Heumann H. (1990) Topography of intermediates in transcription initiation of E. coli. EMBO J.; 9: 2215-20.
-
(1990)
EMBO J
, vol.9
, pp. 2215-2220
-
-
Schickor, P.1
Metzger, W.2
Werel, W.3
Lederer, H.4
Heumann, H.5
-
33
-
-
0023473860
-
Structure and function of E. coli promoter DNA
-
Travers AA. (1987) Structure and function of E. coli promoter DNA. CRC Crit Rev Biochem.; 22: 181-219.
-
(1987)
CRC Crit Rev Biochem
, vol.22
, pp. 181-219
-
-
Travers, A.A.1
-
35
-
-
0018787718
-
Synthesis and properties of fluorescent nucleotide substrates for DNA-dependent RNA polymerases
-
Yarbrough LR, Schlageck JG, Baughman M. (1979) Synthesis and properties of fluorescent nucleotide substrates for DNA-dependent RNA polymerases. J Biol Chem.; 254: 12069-73.
-
(1979)
J Biol Chem
, vol.254
, pp. 12069-12073
-
-
Yarbrough, L.R.1
Schlageck, J.G.2
Baughman, M.3
-
36
-
-
0035895434
-
Interaction of the C-terminal domain of the E. coli polymerase α subunit with the UP element: Recognizing the backbone structure in the minor groove surface
-
Yasuno K, Yamazaki T, Tanaka Y, Kodama TS, Matsugami A, Katahira M, Ishihama A, Kyogoku Y. (2001) Interaction of the C-terminal domain of the E. coli polymerase α subunit with the UP element: recognizing the backbone structure in the minor groove surface. J Mol Biol.; 306: 213-25.
-
(2001)
J Mol Biol
, vol.306
, pp. 213-225
-
-
Yasuno, K.1
Yamazaki, T.2
Tanaka, Y.3
Kodama, T.S.4
Matsugami, A.5
Katahira, M.6
Ishihama, A.7
Kyogoku, Y.8
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