Density-dependent selection in vesicular stomatitis virus

Journal of Virology

Volumn 78, Issue 11, 2004, Pages 5799-5804

  Novella, Isabel S ^a   Reissig, Daniel D ^a   Wilke, Claus O ^b  

^a MEDICAL COLLEGE OF OHIO   (United States)

^b CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GENE PRODUCT;

ANIMAL CELL; ARTICLE; CONTROLLED STUDY; DELETION MUTANT; DENSITY DEPENDENT SELECTION; GENETIC COMPLEMENTATION; MATHEMATICAL MODEL; MONOCLONAL ANTIBODY RESISTANT MUTANT N VIRUS; NATURAL SELECTION; NONHUMAN; POPULATION DENSITY; POPULATION DENSITY DEPENDENCE; PRIORITY JOURNAL; VESICULAR STOMATITIS VIRUS; VIRION; VIRUS INFECTION; VIRUS MUTANT; VIRUS STRAIN;

ANIMALS; ANTIBODIES, MONOCLONAL; CRICETINAE; GENETIC COMPLEMENTATION TEST; MATHEMATICS; MODELS, THEORETICAL; MUTATION; VESICULAR STOMATITIS-INDIANA VIRUS;

EID: 2342451657     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.78.11.5799-5804.2004     Document Type: Article

References (47)

1. Blondel, D., G. G. Harmison, and M. Schubert. 1990. Role of matrix protein in cytopathogenesis of vesicular stomatitis virus. J. Virol. 64:1716-1725.
2. Cattaneo, R., and J. K. Rose. 1993. Cell-fusion by the envelope glycoproteins of persistent measles viruses which caused lethal human brain disease. J. Virol. 67:1493-1502.
3. Chare, E. R., E. A. Gould, and E. C. Holmes. 2003. Phylogenetic analysis reveals a low rate of homologous recombination in negative-sense RNA viruses. J. Gen. Virol. 84:2691-2703.
4. Coffin, J. M. 1995. HIV population dynamics in vivo: implications for genetic variation, pathogenesis, and therapy. Science 267:483-489.
5. Crise, B., L. Buonocore, and J. K. Rose. 1990. CD4 is retained in the endoplasmic reticulum by the human immunodeficiency virus type 1 glycoprotein precursor. J. Virol. 64:5585-5593.
6. DePolo, N. J., C. Giachetti, and J. J. Holland. 1987. Continuing coevolution of virus and defective interfering particles and of viral genome sequences during undiluted passages: virus mutants exhibiting nearly complete resistance to formerly dominant defective interfering particles. J. Virol. 61:454-464.
7. DePolo, N. J., and J. J. Holland. 1986. Very rapid generation/amplification of defective interfering particles by vesicular stomatitis virus variants isolated from persistent infection. J. Gen. Virol. 67:1195-1198.
8. Domingo, E., C. K. Biebricher, M. Eigen, and J. J. Holland. 2001. Quasi-species and RNA virus evolution: principles and consequences. Landes Bioscience, Georgetown, Tex.
9. Domingo, E., and J. J. Holland. 1997. RNA virus mutations and fitness for survival. Annu. Rev. Microbiol. 51:151-178.
10. Drake, J. W. 1993. Rates of spontaneous mutation among RNA viruses. Proc. Natl. Acad. Sci. USA 90:4171-4175.
11. Drake, J. W., and J. J. Holland. 1999. Mutation rates among RNA viruses. Proc. Natl. Acad. Sci. USA 96:13910-13913.
12. Duarte, E. A., I. S. Novella, S. Ledesma, D. K. Clarke, A. Moya, S. F. Elena, E. Domingo, and J. J. Holland. 1994. Subclonal components of consensus fitness in an RNA virus clone. J. Virol. 68:4295-4301.
13. Eigen, M., J. McCaskill, and P. Schuster. 1989. The molecular quasi-species. Adv. Chem. Phys. 75:149-263.
14. Elena, S. F., R. Miralles, and A. Moya. 1997. Frequency-dependent selection in a mammalian RNA virus. Evolution 51:984-987.
15. Frank, S. A. 2001. Multiplicity of infection and the evolution of hybrid incompatibility in segmented viruses. Heredity 87:522-529.
16. Gerrish, P. J., and R. E. Lenski. 1998. The fate of competing beneficial mutations in an asexual population. Genetica 102/103:127-144.
17. Hill, W. G., and A. Robertson. 1966. The effect of linkage on limits to artificial selection. Genet. Res. 8:269-294.
18. Holland, J. J., and C. E. Cords. 1964. Maturation of poliovirus RNA with capsid protein coded by heterologous enteroviruses. Proc. Natl. Acad. Sci. USA 51:1082-1085.
19. Holland, J. J., J. C. de la Torre, D. K. Clarke, and E. A. Duarte. 1991. Quantitation of relative fitness and great adaptability of clonal populations of RNA viruses. J. Virol. 65:2960-2967.
20. Holland, J. J., J. C. de la Torre, D. A. Steinhauer, D. Clarke, E. Duarte, and E. Domingo. 1989. Virus mutation frequencies can be greatly underestimated by monoclonal antibody neutralization of virions. J. Virol. 63:5030-5036.
21. Jia, X.-Y., M. van Eden, M. G. Busch, E. Ehrenfeld, and D. F. Summers. 1998. trans-encapsidation of a poliovirus replicon by different picomavirus capsid proteins. J. Virol. 72:7972-7977.
22. Jung, A., R. Maier, J. P. Vartanian, G. Bocharov, V. Jung, U. Fischer, E. Meese, S. Wain-Hobson, and A. Meyerhans. 2002. Recombination: multiply infected spleen cells in HIV patients. Nature 418:144.
23. + monocytoid cell line. J. Virol. 63:3748-3754.
24. Lefrancois, L., and D. S. Lyles. 1982. The interaction of antibody with the major surface glycoprotein of vesicular stomatitis virus. I. Analysis of neutralizing epitopes with monoclonal antibodies. Virology 121:157-167.
25. Novak, J. E., and K. Kirkegaard. 1994. Coupling between genome translation and replication in an RNA virus. Genes Dev. 8:1726-1737.
26. Novella, I. S., E. A. Duarte, S. F. Elena, A. Moya, E. Domingo, and J. J. Holland. 1995. Exponential increases of RNA virus fitness during large population transmissions. Proc. Natl. Acad. Sci. USA 92:5841-5844.
27. Novella, I. S., S. F. Elena, A. Moya, E. Domingo, and J. J. Holland. 1995. Size of genetic bottlenecks leading to virus fitness loss is determined by mean initial population fitness. J. Virol. 69:2869-2872.
28. Pringle, C. R. 1982. The genetics of vesiculoviruses. Arch. Virol. 72:1-34.
29. Pringle, C. R., and A. J. Easton. 1997. Monopartite negative strand RNA genomes. Semin. Virol. 8:49-57.
30. Rose, J. K., and M. A. Whitt. 2001. Rhabdoviridae: the viruses and their replication, p. 1221-1244. In D. M. Knipe and P. M. Howley (ed.), Fields virology, 4th ed., vol. 1. Lippincott Williams & Wilkins, Philadelphia, Pa.
31. Ruíz-Jarabo, C. M., A. Arias, E. Baranowski, C. Escarmís, and E. Domingo. 2000. Memory in viral quasispecies. J. Virol. 74:3543-3547.
32. Ruíz-Jarabo, C. M., A. Arias, C. Molina-París, C. Briones, E. Baranowski, C. Escarmís, and E. Domingo. 2002. Duration and fitness dependence of quasi-species memory. J. Mol. Biol. 315:285-296.
33. Sawicki, D. L., and S. G. Sawicki. 1985. Functional analysis of the A complementation group mutants of Sindbis HR virus. Virology 144:20-34.
34. Sevilla, N., C. M. Ruíz-Jarabo, G. Gómez-Mariano, E. Baranowski, and E. Domingo. 1998. An RNA virus can adapt to the multiplicity of infection. J. Gen. Virol. 79:2971-2980.
35. Simon, K. O., J. J. Cardamone, Jr., P. A. Whitaker-Dowling, J. S. Youngner, and C. C. Widnell. 1990. Cellular mechanisms in the superinfection exclusion of vesicular stomatitis virus. Virology 177:375-379.
36. Simon, V., N. Padte, D. Murray, J. Vanderhoeven, T. Wrin, N. Parkin, M. Di Mascio, and M. Markowitz. 2003. Infectivity and replication capacity of drug-resistant human immunodeficiency virus type 1 variants isolated during primary infection. J. Virol. 77:7736-7745.
37. Strauss, J. H., and E. G. Strauss. 1994. The alphaviruses: gene-expression, replication, and evolution. Microbiol. Rev. 58:491-562.
38. Teterina, N. L., and W. D. Zhou, and W. M. Cho, and E. Ehrenfeld. 1995. Inefficient complementation activity of poliovirus 2C and 3D proteins for rescue of lethal mutations. J. Virol. 69:4245-4254.
39. Turner, P. E., C. L. Burch, K. A. Hanley, and L. Chao. 1999. Hybrid frequencies confirm limit to coinfection in the RNA bacteriophage φ6. J. Virol. 73:2420-2424.
40. Turner, P. E., and L. Chao. 1998. Sex and the evolution of intrahost competition in RNA virus φ6. Genetics 150:523-532.
41. Turner, P. E., and L. Chao. 1999. Prisoner's dilemma in an RNA virus. Nature 398:441-443.
42. Turner, P. E., and L. Chao. 2003. Escape from prisoner's dilemma in RNA phage φ6. Am. Nat. 161:497-505.
43. Valcárcel, J., and J. Ortín. 1989. Phenotypic hiding: the carryover of mutations in RNA viruses as shown by detection of mar mutants in influenza virus. J. Virol. 63:4107-4109.
44. Whitaker-Dowling, P., J. S. Youngner, C. C. Widnell, and D. K. Wilcox. 1983. Superinfection exclusion by vesicular stomatitis virus. Virology 131:137-143.
45. Wild, T. F., E. Malvoisin, and R. Buckland. 1991. Measles-virus-both the hemagglutinin and fusion glycoproteins are required for fusion. J. Gen. Virol. 72:439-442.
46. Wilke, C. O., and I. S. Novella. 2003. Phenotypic mixing and hiding may contribute to memory in viral quasispecies. BMC Microbiol. 3:11.
47. Wilke, C. O., D. D. Reissig, and I. S. Novella. 2004. Replication at periodically changing multiplicity of infection promotes stable coexistence of competing viral populations. Evolution 58:900-905.