Monopartite negative strand RNA genomes

Seminars in Virology

Volumn 8, Issue 1, 1997, Pages 49-57

  Pringle, Craig R ^a   Easton, Andrew J ^a  

^a UNIVERSITY OF WARWICK   (United Kingdom)

Author keywords

Coding strategy; Gene expression; Gene order; Monopartite genome; Negative strand RNA viruses

Indexed keywords

VIRUS RNA;

BORNA DISEASE VIRUS; CODON; FILOVIRIDAE; GENETIC ORGANIZATION; MONONEGAVIRALES; NONHUMAN; OPEN READING FRAME; PARAMYXOVIRUS; PHYLOGENY; REVIEW; RHABDOVIRUS; RIBOSOMAL FRAMESHIFTING; RNA EDITING; RNA SPLICING; RNA TRANSCRIPTION; RNA VIRUS; TAXONOMY;

BORNA DISEASE VIRUS; BORNAVIRIDAE; FILOVIRIDAE; MONONEGAVIRALES; PARAMYXOVIRIDAE; RHABDOVIRIDAE; RNA VIRUSES;

EID: 0030844829     PISSN: 10445773     EISSN: None     Source Type: Journal    
DOI: 10.1006/smvy.1997.0105     Document Type: Article

References (56)

1. Pringle, C. R. (1991) The order Mononegavirales. Arch. Virol 117, 137-140.
2. Pringle, C. R. (1995) in Molecular Basis of Virus Evolution (Gibbs, A., Calisher, C. H., and Garcia-Arenal, F., Eds.), pp. 426-437, Cambridge Univ. Press, Cambridge, UK.
3. Schneemann, A., Schneider, P. A., and Lamb, R. A., and Lipkin, W. A. (1995) The remarkable coding strategy of Borna disease virus: A new member of the nonsegmented negative strand RNA viruses. Virology 210, 1-8.
4. Murphy, F. A., Fauquet, C. M., Bishop, D. H. L., Ghabrial, S. A., Jarvis, A. W., Martelli, G. P., Mayo, M. A., and Summers, M. D. (1995) Virus Taxonomy: Sixth Report of the International Committee on Taxonomy of Viruses, pp. 1-586, Springer-Verlag, Wien/New York.
5. Ling, R., Easton, A. J., and Pringle, C. R. (1992) Sequence analysis of the 22K, SH, and G genes of turkey rhinotracheitis virus and their intergenic regions reveals a gene order different from that of other pneumoviruses. J. Gen. Virol. 73, 1709-1715.
6. Yu, Q., Davis, P. J., Li, J., and Cavanagh, D. (1992) Cloning and sequencing of the matrix protein (M) gene of turkey rhinotracheitis virus reveal a gene order different from that of respiratory syncytial virus. Virology 186, 426-434.
7. Mebatsion, T., Konig, M., and Conzelmann, K.-K. (1996) Budding of rabies virus particles in the absence of the spike glycoprotein. Cell 84, 941-951.
8. Poch, O., Blumberg, B. M., Bougueleret, L., and Tordo, N. (1990) Sequence comparison of five polymerases (L proteins) of unsegmented negative-strand RNA viruses: Theoretical assignment of functional domains. J. Gen. Virol. 71, 1153-1162.
9. Randhawa, J. S., Wilson, S. D., Tolley, K. P., Cavanagh, D., Pringle, C. R., and Easton, A. J. (1996) Nucleotide sequence of the gene encoding the viral polymerase of avian pneumovirus (APV). J. Gen. Virol. 77, 9047-9051.
10. Zanotto P. M. de A., Gibbs, M. J., Gould, E. A., and Holmes, E. C. (1996) A reevaluation of the higher taxonomy of viruses based on RNA polymerases. J. Virol. 70, 6083-6096.
11. Pringle, C. R. (1991) in The Paramyxoviruses (Kingsbury, D. W., Ed.), pp. 1-40, Plenum, New York/London.
12. Sanchez, A., Kiley, M. P., Holloway, B. P., and Superin, D. D. (1993) Sequence analysis of the Ebola virus genome: Organization, genetic elements, and comparison with the genome of Marburg virus. Virus Res. 29, 215-240.
13. Scholthof, K.-B. G., Hillman, B. I., Modrell, B., Heaton, L. A., and Jackson, A. O. (1994) Characterization and detection of sc4: A sixth gene encoded by Sonchus yellow net virus. Virology 204, 279-288.
14. Wetzel, T., Dietzgen, R. G., and Dale, J. L. (1994) Genomic organization of lettuce necrotic yellows rhabdovirus. Virology 200, 401-412.
15. Landes-Devauchelle, C., Bras, F., Dezelee, S., and Teninges, D. (1995) Gene 2 of the sigma rhabdovirus genome encodes the P protein, and gene 3 encodes a protein related to the reverse transcriptase of retroelements. Virology 213, 300-312.
16. Bourhy, H., Kissi, B., and Tordo, N. (1993) Molecular diversity of the Lyssavirus genus. Virology 194, 70-81.
17. Kurath, G., Ahern, K. G., Pearson, G. D., and Leong, J. C. (1985) Molecular cloning of the six mRNA species of infectious hematopoietic necrosis virus, a fish rhabdovirus, and gene order determination by R loop mapping. Virology 53, 469-476.
18. Walker, P. J., Byrne, K. A., Riding, G. A., Cowley, J. A., Wang, Y., and McWilliam, S. (1992) The genome of bovine ephemeral fever rhabdovirus contains two related glycoprotein genes. Virology 191, 49-61.
19. Wang, W., McWilliam, S. M., Cowley, J. A., and Walker, P. J. (1994) Complex genome organisation in the Gns-L intergenic region of Adelaide river rhabdovirus. Virology 203, 63-72.
20. Rose, J., and Schubert, M. (1987) in The Rhabdoviruses (Wagner, R. R., Ed.), pp. 129-166, Plenum, New York/London.
21. Barrett, T., Subbarao, S. M., Belsham, G. J., and Mahy, B. W J. (1991) in The Paramyxoviruses (Kinsbury, D. W., Ed.), pp. 83-102, Plenum, New York/London.
22. Galinski, M. S., and Wechsler, S. L. (1991) in The Paramyxoviruses (Kingsbury, D. W., Ed.), pp. 41-82, Plenum, New York/London.
23. Collins, P. L. (1991) in The Paramyxoviruses (Kingsbury, D. W., Ed.), pp. 103-162, Plenum, New York/London.
24. Chambers, P., Matthews, D. A., Pringle, C. R., and Easton, A. J. (1990) The nucleotide sequences of intergenic regions between nine genes of pneumonia virus of mice establish the physical order of these genes in the viral genome. Virus Res. 18, 263-270.
25. Barr, J., Chambers, P., Pringle, C. R., and Easton, A. J. (1991) Sequence of the major nucleocapsid protein gene of pneumonia virus of mice: Sequence comparisons suggest structural homology between nucleocapsid proteins of pneumoviruses, paramyxoviruses, rhabdoviruses and filoviruses. J. Gen. Virol. 72, 667-685.
26. Wang, Y., and Walker, P. J. (1993) Adelaide river rhabdovirus expresses consecutive glycoprotein genes as polycistronic mRNAs: New evidence of gene duplication as an evolutionary process. Virology 195, 719-731.
27. Schnell, M. J., Buonocore, L., Whitt, M. A., and Rose, J. K. (1996) The minimal conserved transcription stop-start signal promotes stable expression of a foreign gene in vesicular stomatitis virus. J. Virol. 70, 2318-2323.
28. Bukreyev, A., Camargo, E., and Collins, P. (1996) Recovery of infectious respiratory syncytial virus expressing an additional foreign gene. J. Virol 70, 6634-6641.
29. Banerjee, A. K. (1987) Transcription and replication of the rhabdoviruses. Microbiol. Rev. 51, 66-87.
30. Herman, R. D., Schubert, M., Keene, J. D., and Lazzarini, R. A. (1980) Polycistronic vesicular stomatitis virus RNA transcripts. Proc. Natl. Acad. Sci. USA 77, 4662-4665.
31. Hutchinson, K. L., Herman, R. C., and Hunt, D. M. (1992) Increased synthesis of polycistronic mRNA associated with increased polyadenylation by vesicular stomatitis virus. Virology 189, 67-78.
32. Schneemann, A., Schneider, P. A., Kim, S., and Lipkin, W. I. (1994) Identification of signal sequences that control transcription of Borna disease virus, a nonsegmented negative strand RNA virus. J. Virol. 68, 6514-6522.
33. Meier, E., Harmison, G. G., and Schubert, M. (1987) Homotypic and heterotypic exclusion of vesicular stomatitis virus replication by high levels of recombinant polymerase protein L. J. Virol. 61, 3133-3142.
34. Schneider, P. A., Schneemann, A., and Lipkin, W. I. (1994) RNA splicing in Borna disease virus, a nonsegmented negative strand RNA virus. J. Virol. 68, 5007-5012.
35. Sanchez, A., Trappier, S. G., Mahy, B. W. J., Peters, C. J., and Nichol, S. T. (1996) The virion glycoproteins of Ebola viruses are encoded in two reading frames and are expressed through transcritional editing. Proc. Natl. Acad. Sci. USA 93, 3602-3607.
36. Kolakofsky, D., Vidal, S., and Curran, J. (1991) in The Paramyxoviruses (Kingsbury, D. W., Ed.), pp. 215-234, Plenum, New York/London.
37. Radecke, F., and Billeter, M. A. (1996) The nonstructural C protein is not essential for multiplication of Edmonston B strain measles virus in cultured cells. Virology 217, 418-421.
38. Barr, J., Chambers, P., Harriott, P., Pringle, C. R., and Easton, A. J. (1994) Sequence of the phosphoprotein gene of pneumonia virus of mice: Expression of multiple proteins from two overlapping reading frames. J. Virol. 68, 5330-5334.
39. Kretzschmar, E., Peluso, R., Schnell, M. J., Whitt, M. A., and Rose, J. K. (1996) Normal replication of vesicular stomatitis virus without C proteins. Virology 216, 309-316.
40. Collins, P. L., Hill, M. G., Camargo, E., Grosfeld, H., Chanock, R. M., and Murphy, B. R. (1995) Production of infectious human respiratory syncytial virus from cloned cDNA confirms an essential role for the transcription elongation factor from the 5′ proximal open reading frame of M2 mRNA in gene expression and provides a capability for vaccine development. Proc. Natl. Acad. Sci. USA 92, 11563-11567.
41. Caravokyri, C., Zajac, A. J., and Pringle, C. R. (1992) Assignment of mutant tsN19 (complementation group E) of respiratory syncytial virus to the P protein gene. J. Gen. Virol. 73, 865-873.
42. Curran, J. A., and Kolakofsky, D. (1988) Ribosomal initiation from an ACG codon in the Sendai virus P/CmRNA. EMBO J. 7, 245-251.
43. Herman, R. C. (1987) Characterisation of the internal initiation of translation on the vesicular stomatitis virus phosphoprotein mRNA. Biochemistry 26, 8346-8350.
44. Poison, A. G., Bass, B. L., and Casey, J. L. (1996) RNA editing of hepatitis delta virus antigenome by dsRNA-adenosine deaminase. Nature 380, 454-456.
45. Rima, B., Alexander, D. J., Billeter, M. A., Collins, P. L., Kingsbury, D. W., Lipkind, M. A., Nagai, Y., Orvell, C., Pringle, C. R., and ter Meulen, V. (1995) in Virus Taxonomy (Murphy, F. A., Fauquet, C. M., Bishop, D. H. L., Ghabrial, S. A., Jarvis, A. W., Martelli, G. P., Mayo, M. A., and Summers, M. D., Eds.), pp. 268-274, Springer-Verlag, Wien/New York.
46. Cane, P. A., Matthews, D. A., and Pringle, C. R. (1993) Frequent polymerase errors observed in a restricted area of clones derived from the attachment (G) protein gene of respiratory syncytial virus. J. Virol. 67, 1090-1093.
47. Liston, P., and Breidis, D. J. (1995) Ribosomal frame-shifting during translation of measles virus P protein mRNA is capable of directing synthesis of a unique protein. J. Virol. 69, 6742-6750.
48. Tolley, K. P., Marriott, A. C., Simpson, A., Plows, D. J., Matthews, D. A., Longhurst, S. J., Evans, J. E., Johnson, J. L., Cane, P. A., Randolph, V. B., Easton, A. J., and Pringle, C. R. (1996) Identification of mutations contributing to the reduced virulence of a modified strain of respiratory syncytial virus. Vaccine 14, 1637-1646.
49. Billeter, M. A., and Cattaneo, R. (1991) in The Paramyxoviruses (Kingsbury, D. W., Ed.), pp. 323-346, Plenum, New York/London.
50. Cane, P. A., and Pringle, C. R. (1995) Molecular epidemiology of human respiratory syncytial virus. Semin. Virol. 6, 371-378.
51. Schnell, M. J., Mebatsion, T., and Conzelmann, K.-K. (1994) Infectious rabies viruses from cloned cDNA. EMBO J. 13, 4195-4202.
52. Radecke, P., Spielhofer, P., Schneider, H., Kaelin, K., Huber, M., Dotsch, C., Christiansen, G., and Billeter, M. A. (1995) Rescue of measles virus from cloned DNA. EMBO J. 23, 5773-5784.
53. Garcin, D., Pelet, T., Calain, P., Roux, L., Curran, J., and Kolakofsky, D. (1995) A highly recombinogenic system for the recovery of infectious Sendai paramyxovirus from cDNA: Generation of a novel copy-back nondefective interfering virus. EMBO J. 14, 6087-6094.
54. Lawson, N. D., Stillman, E. A., Whitt, M. A., and Rose, J. K. (1995) Recombinant vesicular stomatitis viruses from DNA. Proc. Natl. Acad. Sci. USA 92, 4477-4481.
55. Whelan, S. P. J., Ball, L. A., Barr, J. N., and Wertz, G. T. W. (1995) Efficient recovery of infectious vesicular stomatitis virus entirely from cDNA clones. Proc. Natl. Acad. Sci. USA 92, 8388-8392.
56. Kumar, S., Tamura, K., and Nei, M. (1993) MEGA: Molecular evolutionary genetic analysis, version 1.01. Pennsylvania State University, University Park, PA16802.