Replication at periodically changing multiplicity of infection promotes stable coexistence of competing viral populations

Evolution

Volumn 58, Issue 4, 2004, Pages 900-905

  Wilke, Claus O ^a   Reissig, Daniel D ^b   Novella, Isabel S ^b  

^a CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

^b MEDICAL COLLEGE OF OHIO   (United States)

Author keywords

Complementation; Experimental evolution; Frequency dependent selection; Quasispecies; Vesicular stomatitis virus

Indexed keywords

EVOLUTION; EXPERIMENTAL CULTURE; FREQUENCY DEPENDENCE; SELECTION; VIRUS;

HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 1; RNA VIRUSES; VESICULAR STOMATITIS VIRUS;

EID: 0346922470     PISSN: 00143820     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.0014-3820.2004.tb00422.x     Document Type: Article

References (38)

1. Bangham, C. R. M., and T. B. L. Kirkwood. 1990. Defective interfering particles: effects in modulating virus growth and persistence. Virology 179:821-826.
2. Brenner, S. 1957. Genetic control and phenotypic mixing of the adsorption cofactor requirement in bacteriophages T2 and T4. Virology 3:560-574.
3. Chao, L. 1990. Fitness of RNA virus decreased by Muller's ratchet. Nature 348:454-455.
4. Chao, L., T. T. Tran, and T. T. Tran. 1997. The advantage of sex in the RNA virus φ6. Genetics 147:953-959.
5. Clarke, D. K., E. A. Duarte, S. F. Elena, A. Moya, E. Domingo, and J. Holland, 1994. The red queen reigns in the kingdom of RNA viruses. Proc. Natl. Acad. Sci. USA 91:4821-4824.
6. DePolo, N. J., and J. J. Holland. 1986. Very rapid generation/ amplification of defective interfering particles by vesicular stomatitis virus variants isolated from persistent infection. J. Gen. Virol. 67:1195-1198.
7. DePolo, N. J., C. Giachetti, and J. J. Holland. 1987. Continuing coevolution of virus and defective interfering particles and of viral genome sequences during undiluted passages: virus mutants exhibiting nearly complete resistance to formerly dominant defective interfering particles. J. Virol. 61:454-464.
8. Duarte, E., D. Clarke, A. Moya, E. Domingo, and J. Holland. 1992. Rapid fitness losses in mammalian RNA virus clones due to Muller's ratchet. Proc. Natl. Acad. Sci. USA 89:6015-6019.
9. Elena, S. F., R. Miralles, and A. Moya. 1997. Frequency-dependent selection in a mammalian RNA virus. Evolution 51:984-987.
10. Escarmís, C., M. Dávila, N. Charpentier, A. Bracho, A. Moya, and E. Domingo. 1996. Genetic lesions associated with Muller's ratchet in an RNA virus. J. Mol. Biol. 264:255-267.
11. Frank, S. A. 2000. Within-host spatial dynamics of viruses and defective interfering particles. J. Theor. Biol. 206:279-290.
12. Holland, J. J., J. C. de la Torre, D. A. Steinhauer, D. Clarke, E. Duarte, and E. Domingo. 1989. Virus mutation frequencies can be greatly underestimated by monoclonal antibody neutralization of virions. J. Virol. 63:5030-5036.
13. Holland, J. J., J. C. de la Torre, D. K. Clarke, and E. A. Duarte. 1991. Quantitation of relative fitness and great adaptability of clonal populations of RNA viruses. J. Virol. 65:2960-2967.
14. Huang, A. S., E. L. Palma, N. Hewlett, and B. Roizman. 1974. Pseudotype formation between enveloped RNA and DNA viruses. Nature 252:743-745.
15. King, A. M. Q., D. McCahon, W. R. Slade, and J. W. I. Newman. 1982. Recombination in RNA. Cell 29:921-928.
16. Lai, M. M. 1992. Genetic recombination in RNA viruses. Curr. Top. Microbiol. Immunol. 176:21-32.
17. Lefrancois, L., and D. S. Lyles. 1982. The interaction of antibody with the major surface glycoprotein of vesicular stomatitis virus. I. Analysis of neutralizing epitopes with monoclonal antibodies. Virology 121:157-167.
18. Novella, I. S., S. F. Elena, A. Moya, E. Domingo, and J. J. Holland. 1995. Size of genetic bottlenecks leading to virus fitness loss is determined by mean initial population fitness. J. Virol. 69: 2869-2872.
19. Novella, I. S., J. Quer, E. Domingo, and J. J. Holland. 1999. Exponential fitness gains are limited by bottleneck effects. J. Virol. 73:1668-1671.
20. Novella, I. S., D. D. Reissig, and C. O. Wilke. 2004. Density-dependent selection in vesicular stomatitis virus. J. Virol. In Press.
21. Novick, A. and L. Szilard. 1951. Virus strains of identical phenotype but different genotype. Science 113:34-35.
22. Rodríguez, L. L., J. H. Owens, C. J. Peters, and S. T. Nichol. 1998. Genetic reassortment among viruses causing hantavirus pulmonary syndrome. Virology 242:99-106.
23. Rose, J. K., and M. A. Whitt. 2001. Rhabdoviridae: the viruses and their replication. Pp. 1221-1244 in D. M. Knipe and P. M. Howley, eds. Field's virology. 4th ed. Vol. 1. Lippincott Williams and Wilkins, Philadelphia.
24. Rouzine, I. M., J. Wakeley, and J. M. Coffin. 2003. The solitary wave of asexual evolution. Proc. Natl. Acad. Sci. USA 100: 587-592.
25. Schuster, P., and J. Swetina. 1988. Stationary mutant distributions and evolutionary optimization. Bull. Math. Biol. 50:635-660.
26. Solé, R. V., R. Ferrer, I. González-García, J. Quer, and E. Domingo. 1999. Red queen dynamics, competition and critical points in a model of RNA virus quasispecies. J. theor. Biol. 198:47-59.
27. Steinhauer, D. A., and J. J. Skehel. 2002. Genetics of influenza viruses. Anna. Rev. Gen. 36:305-332.
28. Szathmáry, E. 1992. Natural selection and dynamical coexistence of defective and complementing virus segments. J. Theor. Biol. 157:383-406.
29. Turner, P. E. and L. Chao. 1998. Sex and the evolution of intrahost competition in RNA virus Φ6. Genetics 150:523-532.
30. _. 1999. Prisoner's dilemma in an RNA virus. Nature 398: 441-443.
31. _. 2003. Escape from prisoner's dilemma in RNA phage Φ6. Am. Nat. 161:497-505.
32. Turner, P. E., and S. F. Elena. 2000. Cost of host radiation in an RNA virus. Genetics 156:1465-1470.
33. White, P. S., F. Morales, and M. J. Roossinck. 1995. Interspecific reassortment of genomic segments in the evolution of cucumoviruses. Virology 207:334-337.
34. Wilke, C. O. 2001. Selection for fitness versus selection for robustness in RNA secondary structure folding. Evolution 55: 2412-2420.
35. Wilke, C. O., and I. S. Novella. 2003. Phenotypic mixing and hiding may contribute to memory in viral quasispecies. BMC Microbiology 3:11.
36. Wilke, C. O., J. L. Wang, C. Ofria, R. E. Lenski, and C. Adami. 2001. Evolution of digital organisms at high mutation rate leads to survival of the flattest. Nature 412:331-333.
37. Yuste, E., S. Sanchez-Palomino, C. Casado, E. Domingo, and C. López-Galíndez. 1999. Drastic fitness loss in human immunodeficiency virus type 1 upon serial bottleneck events. J. Virol. 73:2745-2751.
38. Yuste, E., A. Moya, and C. López-Galíndez. 2002. Frequency-dependent selection in human immunodeficiency virus type 1. J. Gen. Virol. 83:103-106.