Genetic identification of stocks of marine fish and shellfish

Bulletin of Marine Science

Volumn 62, Issue 2, 1998, Pages 589-621

  Shaklee, James B ^a   Bentzen, Paul ^a  

^a WASHINGTON DEPARTMENT OF FISH AND WILDLIFE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

FISHERY MANAGEMENT; GENETIC DIFFERENTIATION; POPULATION GENETICS; STOCK ENHANCEMENT;

GADUS MORHUA; ONCORHYNCHUS KETA;

EID: 0032230053     PISSN: 00074977     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Conference Paper

References (209)

1. Manual for starch gel electrophoresis: Complete procedures for detection of genetic variation
2. Gene flow and lack of population differentiation in Atlantic cod, Gadus morhua L. from Iceland, and comparison of cod from Norway and Newfoundland
3. Intraspecific phylogeography: The mitochondrial DNA bridge between population genetics and systematics
4. Geographic population structure and species differences in mitochondrial DNA of mouthbrooding marine catfishes (Ariidae) and demersal spawning toadfishes (Batrachoididae)
5. High levels of genetic subdivision of marine and estuarine populations of the estuarine catfish Cnidoglanis macrocephalus (Plotosidae) in southwestern Australia
6. DNA fingerprints of orange roughy, Hoplostethus atlanticus: A population comparison
7. Population variation in the mitochondrial cytochrome b gene of the orange roughy Hoplostethus atlanticus and the hoki Macruronus novaezelandiae
8. The use of minisatellite DNA variation for stock identification of chum salmon, Oncorhynchus keta
9. Stock identification of sockeye salmon by means of minisatellite DNA variation
10. Cloning of hypervariable minisatellite and simple microsatellite repeats for DNA fingerprinting of important aquacultural species of salmonids and tilapia
11. Microsatellite polymorphism and the population structure of Atlantic cod (Gadus morhua) in the northwest Atlantic
12. Genetic differences among black-lipped pearl oyster (Pinctada margaritifera) populations in the western Pacific
13. Genetic structure of crown-of-thorns starfish (Acanthaster planci) in Australia
14. No genetic differentiation of giant clam (Tridacna gigas) populations in the Great Barrier Reef, Australia
15. Gene flow among giant clam (Tridacna gigas) populations in Pacific does not parallel ocean circulation
16. Geographical variation in allozyme frequencies of populations of Penaeus monodon (Crustacea: Decapoda) in Australia
17. Genetic structure of Penaeus monodon in Australia: Concordant results from mtDNA and allozymes
18. Genetic studies in marine fishes II. A protein electrophoretic analysis of population structure in the red drum Sciaenops ocellatus
19. Arbitrarily primed DNA fingerprinting for phylogenetic reconstruction in vertebrates: The Xiphophorus model
20. Genetic structure of Atlantic and Gulf of Mexico populations of sea bass, menhaden, and sturgeon: Influence of zoogeographic factors and life-history patterns
21. Genetic evidence of population heterogeneity and cryptic speciation in the ommastrephid squid Martialia hyadesi from the Patagonian Shelf and the Antarctic Polar Frontal Zone
22. Organization of microsatellites differs between mammals and cold-water teleost fish
23. Length variation in mitochondrial DNA of the minnow Cyprinella spiloptera
24. Population genetics of the American oyster Crassostrea virginica along the Atlantic coast and the Gulf of Mexico
25. Population genetics of the family Ostreidae. I. Intraspecific studies of Crassostrea gigas and Saccostrea commercialis
26. Population genetics of the family Ostreidae. II. Interspecific studies of the genera Crassostrea and Saccostrea
27. Genetic patchiness among populations of queen conch Strombus gigas in the Florida Keys and Bimini
28. Cod genetics and physiology: mtDNA
29. Detection of intraspecific DNA sequence variation in the mitochondrial cytochrome b gene of Atlantic cod (Gadus morhua) by the polymerase chain reaction
30. A direct approach to the measurement of genetic variation in fish populations: Applications of the polymerase chain reaction to studies of Atlantic cod, Gadus morhua
31. Molecular genetics and the stock concept in fisheries
32. Multilocus DNA fingerprinting and RAPD reveal similar genetic relationships between strains of Oreochromis niloticus
33. PCR-based method for single egg and embryo identification in marine organisms
34. A method for the rapid isolation of mitochondrial DNA from fishes
35. Identification and recruitment patterns of juvenile surf clams, Macta discors and M. murchisoni from central New Zealand
36. Stock identification of weakfish, Cynoscion regalis, in the middle Atlantic region
37. Geographic variability in the grey mullet Mugil cephalus: Preliminary results of mtDNA and chromosome analyses
38. Pronounced genetic structure of mitochondrial DNA among populations of the circumglobally distributed grey mullet (Mugil cephalus)
39. Geographic variation in Atlantic cod, Gadus morhua, off eastern North America: A biochemical systematics approach
40. Cod, Gadus morhua L., populations identified by mitochondrial DNA
41. Minisatellite DNA fingerprints of Atlantic cod (Gadus morhua)
42. Haemoglobin variation in cod - A reliable marker for Arctic cod (Gadus morhua L.)
43. RAPD analysis: An efficient method of DNA fingerprinting in fishes
44. Why statistical power is necessary to link analyses of molecular structure variation to decisions about population structure
45. Acanthochromis polyacanthus, a fish lacking larval dispersal, has genetically differentiated populations at local and regional scales on the Great Barrier Reef
46. Systematics of the genus Alopias (Lamniformes: Alopiidae) with evidence for the existence of an unrecognized species
47. Allozyme and mitochondrial DNA analysis of the tropical saddle-tail sea perch, Lutjanus malabaricus (Schneider), from Australian waters
48. Enzyme variation in orange roughy, Hoplostethus atlanticus (Teleostei: Trachichthyidae), from southern Australian and New Zealand waters
49. Enzyme variation in jackass morwong, Nemadactylus macropterus (Schneider, 1801) (Teleostei: Cheilodactylidae), from Australian and New Zealand waters
50. Allozyme and mitochondrial DNA variation in orange roughy, Hoplostethus atlanticus (Teleostei: Trachichthyidae): Little differentiation between Australian and North Atlantic populations
51. The application of molecular markers to the study and conservation of fish populations, with special reference to Salmo
52. Conservation and dynamics of microsatellite loci over 300 million years of marine turtle evolution
53. Haemoglobin polymorphism in Norwegian cod populations
54. Genetic effects of artificial propagation: Signals from wild and hatchery populations of red abalone in California
55. A single locus minisatellite as a hypervariable genetic marker in gadoid species
56. Population genetics of Atlantic cod using amplified single locus minisatellite VNTR analysis
57. The adaptation of cellulose acetate electrophoresis to fish enzymes
58. Genetic studies of marine fishes. IV. Analysis of population structure in the red drum (Sciaenops ocellatus) using mitochondrial DNA
59. Genetic distinctness of red drum (Sciaenops ocellatus) from Mosquito Lagoon, east-central Florida
60. Mitochondrial DNA differentiation and population structure in red drum (Sciaenops ocellatus) from the Gulf of Mexico and Atlantic Ocean
61. Temporal stability of nuclear gene (allozyme) and mitochondrial DNA genotypes among red drums from the Gulf of Mexico
62. Allozyme differentiation within and between red drum (Sciaenops ocellatus) from the Gulf of Mexico and Atlantic Ocean
63. Mitochondrial DNA diversity and population structure in marine fish species from the Gulf of Mexico
64. Electrophoretic identification of early juvenile yellowfin tuna, Thunnus albacares
65. Stock structure of the bluefish Pomatomus saltatrix along the mid-Atlantic coast
66. A genetic analysis of weakfish Cynoscion regalis stock structure along the mid-Atlantic Coast
67. Mitochondrial DNA diversity in jackass morwong (Nemadactylus macropterus: Teleostei) from Australian and New Zealand waters
68. Molecular genetic analysis of a stepped multilocus cline in the American oyster (Crassostrea virginica)
69. Anonymous nuclear DNA markers in the American oyster and their implications for the heterozygote deficiency phenomenon in marine bivalves
70. A biochemical genetic investigation of spiny lobster (Panulirus argus) stock replenishment in Bermuda
71. Genetic drift and effective population sizes of hatchery-propagated stocks of the Pacific oyster, Crassostrea gigas
72. Multiple origins of gender-associated mitochondrial DNA lineages in bivalves (Mollusca: Bivalvia)
73. Electrophoretic identification and genetic analysis of bivalve larvae
74. The use of cod blood protein polymorphisms in the Belt Sea, the Sound and the Baltic Sea
75. Genetic relationships among species of hagfish revealed by protein electrophoresis
76. Individual-specific "fingerprints" of human DNA
77. Genetic subdivision of the pearl oyster Pinctada maxima (Jameson, 1901) (Mollusca: Pteriidae) in northern Australia
78. Genetic subdivision of stocks of snapper, Chrysophrys unicolor, in Shark Bay, Western Australia
79. High levels of genetic subdivision in peripherally isolated populations of the atherinid fish Craterocephalus capreoli in the Houtman Abrolhos Islands, Western Australia
80. Genetic studies of cod, Gadus morhua L., in Masfjorden, western Norway: Comparisons between the local stock and released, artificially reared cod
81. Balancing selection at allozyme loci in oysters: Implications from nuclear RFLPs
82. Genetic relationships of mud crabs, genus Scylla, throughout the Indo-west Pacific
83. Population structure of eastern oysters (Crassostrea virginica) inhabiting the Laguna Madre, Texas, and adjacent bay systems
84. Population structure of the Spanish sardine Sardinella aurita: Natural morphological variation in a genetically homogeneous population
85. New taxonomy and niche partitioning on coral reefs: Jack of all trades or master of some?
86. Maintenance of an aminopeptidase allele frequency cline by natural selection
87. Genetic relationships among chum salmon populations in southeast Alaska and northern British Columbia
88. Genetic differentiation of Texas Gulf Coast populations of the blue crab Callinectes sapidus
89. The use of restriction endonucleases to measure mitochondrial DNA sequence relatedness in natural populations. III. Techniques and potential applications
90. Genetic evidence for separation of two sharks, Carcharhinus limbatus and C. tilstoni, from northern Australia
91. Use of allozyme electrophoresis for identifying two species of penaeid prawn postlarvae
92. Changing patterns of population structure and gene flow at different spatial scales in Birgus latro (the coconut crab)
93. Indo-Pacific population structure and evolutionary history of the coconut crab Birgus latro
94. Marine enhancement with striped mullet: Are hatchery releases replenishing or displacing wild stocks?
95. Genetic structure of giant clam (Tridacna derasa) populations from reefs in the Indo-Pacific
96. Lack of geographic variation in anonymous polymorphisms in the American oyster, Crassostrea virginica
97. Population genetic consequences of developmental evolution in sea urchins (genus Heliocidaris)
98. Population genetics of the blue crab Callinectes sapidus: Modest population structuring in a background of high gene flow
99. Multiple forms of enzymes: Tissue, ontogenetic and species specific patterns
100. Mitochondrial DNA differentiation between two sympatric morphs of striped jack near Japan
101. Starch gel electrophoresis of allozymes
102. Biochemical population genetics and the spiny lobster larval recruitment problem: An update
103. Allozyme variation and conservation: Applications to spiny lobsters and crocodilians
104. Implications of spiny lobster recruitment patterns of the Caribbean - A biochemical genetic approach
105. Evolution of mitochondrial DNA in fish
106. Biochemical genetics and population structure of blue grenadier Macruronus novaezelandiae (Pisces: Merluccidae), from Australian waters
107. Population structure, larval dispersal, and gene flow in the queen conch, Strombus gigas, of the Caribbean
108. Genetic diversity in spawning cod along the Norwegian coast
109. Starch gel electrophoresis and histochemical visualization of proteins
110. Minimally invasive tissue sampling
111. Identification of marine fish eggs: A biochemical genetics approach
112. Genetic variation in Atlantic cod (Gadus morhua) throughout its range
113. Proteins: Isozyme electrophoresis
114. Population genetic studies of the crown-of-thorns starfish Acanthaster planci (L.) in the Great Barrier Reef region
115. Estimation of average heterozygosity and genetic distance from a small number of individuals
116. Genetic differences between geographic populations of the crown-of-thorns starfish throughout the Pacific region
117. Semiautomated multilocus genotyping of Pacific salmon (Oncorhynchus spp.) using microsatellites
118. Whose larvae?
119. Genetic divergence between Acipenser oxyrinchus oxyrinchus and A. o. desotoi as assessed by mitochondrial DNA sequencing analysis
120. The evolving technology of DNA fingerprinting and its application to fisheries and aquaculture
121. Mitochondrial DNA restriction site variation in Tasmanian populations of orange roughy (Hoplostethus atlanticus), a deep-water marine teleost
122. Marine speciation on a small planet
123. Nucleic acids II: The polymerase chain reaction
124. Developments in molecular genetic techniques in fisheries
125. Low levels of intraspecific variation in the mitochondrial DNA of chum salmon (Oncorhynchus keta)
126. The genetic effects of larval dispersal depend on spatial scale and habitat characteristics
127. Electrophoretic and morphological examination of Austrocochlea constricta (Gastropoda: Trochidae): A species complex
128. Morphological, meristic, and genetic analysis of stock structure in juvenile Atlantic cod (Gadus morhua) from the Newfoundland Shelf
129. Allozyme differences in Caribbean and Gulf of California populations of bonefishes (Albula)
130. Genetic diversity patterns of chum salmon in the Pacific Northwest
131. Genetic structure of Dascyllus aruanus populations in French Polynesia
132. Genetic population structure and gene flow in the Atlantic cod Gadus morhua: A comparison of allozyme and nuclear RFLP loci
133. The evolutionary significance of genetic variation at enzyme synthesizing loci in the teleost Fundulus heteroclitus
134. Inter-decadal heterogeneity in mitochondrial DNA of Atlantic haddock (Melanogrammus aeglefinus) from Georges Bank
135. Population structure of Sciaenops ocellatus and Cynoscion nebulosus (Pisces: Sciaenidae): Biochemical variation, genetic subdivision and dispersal
136. A genetic discontinuity in a continuously distributed species: Mitochondrial DNA in the American oyster, Crassostrea virginica
137. Geographical distribution of electrophoretically detected protein variation in Australian commercial fishes. II. Jackass morwong, Cheilodactylus macropterus Bloch & Schneider
138. 470 Million years of conservation of microsatellite loci among fish species
139. Enzyme electrophoresis, genetic identity and description of a new genus and species of heteronemertean (Nemertea, Anopla) from northwestern Spain and North Wales
140. Genetic evidence for the occurrence of a cryptic species with the littoral nemerteans Lineus ruber and L. viridis (Nemertea: Anopla)
141. Genetic differentiation between inshore and offshore Atlantic cod (Gadus morhua L.) off Newfoundland: Microsatellite DNA variation and antifreeze level
142. Spatial and temporal variation in the genetic composition of a larval cod (Gadus morhua) aggregation: Cohort contribution and genetic stability
143. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase
144. An electrophoretic analysis of stock structure in the ornate tropical rock lobster, Panulirus ornatus
145. Genetics and taxonomy of ribbed mussels (Geukensia spp.)
146. Genetic variation and geographic differentiation in mitochondrial DNA of the horseshoe crab, Limulus polyphemus
147. Allozyme polymorphisms permit the identification of larval and juvenile rockfishes of the genus Sebastes
148. Genetic variation in the horseshoe crab (Limulus polyphemus), a phylogenetic "relic."
149. The utilization of isozymes as gene markers in fisheries management and conservation
150. Operation of a large-scale, multiagency genetic stock identification program
151. Biochemical and morphological evolution of Hawaiian bonefishes (Albula)
152. Speciation and evolution of marine fishes studied by the electrophoretic analysis of proteins
153. Enhanced DNA extraction and PCR amplification of mitochondrial genes from formalin-fixed museum specimens
154. Early life histories, ocean currents, and the population genetics of Caribbean reef fishes
155. Haemoglobin polymorphism of cod in the Baltic and the Danish Belt Sea
156. Species identification of spiny lobster phyllosome larvae via ribosomal DNA analysis
157. Mitochondrial DNA variation and population structure in the spiny lobster Panulirus argus
158. Mitochondrial DNA variation in seasonal cohorts of spiny lobster (Panulirus argus) postlarvae
159. Interactions between natural and farmed fish populations: Information from genetic markers
160. Rapid assessment of single-copy nuclear DNA variation in diverse species
161. Genetic similarity between samples of orange roughy Hoplostethus atlanticus from the Tasman Sea, southwest Pacific Ocean and northeast Atlantic Ocean
162. Genetic evidence for two species of sprat (Sprattus) in New Zealand waters
163. Electrophoretic identification of larval and 0-group flounders (Rhombosolea spp.) from Wellington Harbour
164. Genetic tags in the New Zealand hoki Macruronus novaezelandiae
165. Evidence for two species of arrow squid in the New Zealand fishery
166. Mitochondrial DNA in the Atlantic cod, Gadus morhua: Lack of genetic divergence between eastern and western populations
167. Genetically isolated stocks of orange roughy (Hoplostethus atlanticus), but not hoki (Macruronus novaezelandiae), in the Tasman Sea and southwest Pacific Ocean around New Zealand
168. Genetic evidence for two species of tarikihi (Teleostei: Cheilodactylidae: Nemadactylus) in New Zealand waters
169. Evidence of stock separation in southern hemisphere orange roughy (Hoplostethus atlanticus, Trachichthyidae) from restriction-enzyme analysis of mitochondrial DNA
170. Biochemical evidence for a third species of angel shark off the east coast of South America
171. Isozymic differentiation of two sibling species of Squatina (Chondrichthyes) in south Brazil
172. Genetic evidence for cryptic speciation in allopatric populations of two cosmopolitan species of the calcareous sponge genus Clathrina
173. Stock structure and homing fidelity in Gulf of Mexico sturgeon (Acipenser oxyrinchus desotoi) based on restriction fragment length polymorphism and sequence analysis of mitochondrial DNA
174. Allozyme electrophoresis demonstrates that the scleractinian coral Montipora digitata is two species
175. Cod genetics and physiology: Microsatellite and cDNA
176. Status of the culture of milkfish (Chanos chanos), striped mullet (Mugil cephalus), and grouper (Epinephelus sp.)
177. Population structure and identification of north Pacific Ocean chum salmon (Oncorhynchus keta) revealed by an analysis of minisatellite DNA variation
178. Molecular genetic evidence for parallel life-history evolution within a Pacific salmon (sockeye salmon and kokanee, Oncorhynchus nerka)
179. Genetic structure of the western rock lobster, Panulirus cygnus, with the benefit of hindsight
180. The genetic stock structure of common snook (Centropomus undecimalis)
181. Differences in haplotype frequencies of mtDNA of the Spanish sardine Sardinella aurita between specimens from the eastern Gulf of Mexico and southern Brazil
182. Distribution and morphological characters of immature Martialia hyadesi (Cephalopoda: Oegopsida) in New Zealand waters
183. AFLP: A new technique for DNA fingerprinting
184. A biochemical and morphological review of the lizardfish genus Saurida in Hawaii, with the description of a new species
185. A revision of the Hawaiian lizardfishes of the genus Synodus, with descriptions of four new species
186. Appraisal of molecular genetic techniques in fisheries
187. A comparison of genetic diversity levels in marine, freshwater, and anadromous fishes
188. Fingerprinting genomes using PCR with arbitrary primers
189. Multiplexed systems of microsatellites for genetic analysis in coastal cutthroat trout (Oncorhynchus clarki clarki) and steelhead (Oncorhynchus mykiss)
190. Need for replicated electrophoretic analyses in multiagency genetic stock identification (GSI) programs: Examples from a pink salmon (Oncorhynchus gorbuscha) GSI fisheries study
191. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers
192. Genetic consequences of long larval life in the starfish Linckia laevigata (Echinodermata: Asteroidea) on the Great Barrier Reef
193. Genetic uniformity of widely separated populations of the coral reef starfish Linckia laevigata from the east Indian and west Pacific oceans, revealed by allozyme electrophoresis
194. Genetic stock structure of western Alaska chum salmon and a comparison with Russian far east stocks
195. Determining continent of origin of chum salmon (Oncorhynchus keta) using genetic stock identification techniques: Status of allozyme baseline in Asia
196. Allozyme variability of Oncorhynchus nerka in the Pacific Northwest, with special reference to populations in Redfish Lake, Idaho
197. Life history variation and population structure in sockeye salmon
198. Biochemical genetic survey of sockeye salmon (Oncorhynchus nerka) in Canada
199. DNA fingerprinting of fishes
200. Microsatellites: Genetic markers for the future
201. Genetic divergence in lizardfishes of the genus Saurida from southern Japan
202. Genetic dimorphism in Pseudocaranx dentex from Tosa Bay, Japan
203. Genetic structure and distribution of Photololigo spp. in Australia