-
2
-
-
0017868338
-
Empirical predictions of protein conformation
-
Chou, P. Y., and G. D. Fasman. 1978. Empirical predictions of protein conformation. Annu. Rev. Biochem. 47:251-276.
-
(1978)
Annu. Rev. Biochem.
, vol.47
, pp. 251-276
-
-
Chou, P.Y.1
Fasman, G.D.2
-
3
-
-
0000920828
-
The packing of α-helices: Simple coiled coils
-
Crick, F. H. C. 1953. The packing of α-helices: simple coiled coils. Acta Crystallogr. 6:689-697.
-
(1953)
Acta Crystallogr.
, vol.6
, pp. 689-697
-
-
Crick, F.H.C.1
-
4
-
-
0037847498
-
FTIR spectroscopy of the complex between pharaonis phoborhodopsin and its transducer protein
-
Furutani, Y., Y. Sudo, N. Kamo, and H. Kandori. 2003. FTIR spectroscopy of the complex between pharaonis phoborhodopsin and its transducer protein. Biochemistry. 42:4837-4842.
-
(2003)
Biochemistry
, vol.42
, pp. 4837-4842
-
-
Furutani, Y.1
Sudo, Y.2
Kamo, N.3
Kandori, H.4
-
5
-
-
0037015619
-
Molecular basis of transmembrane signaling by sensory rhodopsin II-transducer complex
-
Gordeliy, V. I., J. Labahn, R. Moukhametzianov, R. Efemov, J. Granzin, R. Schlesinger, G. Buldt, T. Savopol, A. J. Scheldig, J. P. Klare, and M. Engelhard. 2002. Molecular basis of transmembrane signaling by sensory rhodopsin II-transducer complex. Nature. 419:484-487.
-
(2002)
Nature
, vol.419
, pp. 484-487
-
-
Gordeliy, V.I.1
Labahn, J.2
Moukhametzianov, R.3
Efemov, R.4
Granzin, J.5
Schlesinger, R.6
Buldt, G.7
Savopol, T.8
Scheldig, A.J.9
Klare, J.P.10
Engelhard, M.11
-
6
-
-
0029903197
-
Electron crystallographic refinement of the structure of bacteriorhodopsin
-
Grigorieff, N. T., A. Ceska, K. H. Downing, J. M. Baldwin, and R. Henderson. 1996. Electron crystallographic refinement of the structure of bacteriorhodopsin. J. Mol. Biol. 259:393-421.
-
(1996)
J. Mol. Biol.
, vol.259
, pp. 393-421
-
-
Grigorieff, N.T.1
Ceska, A.2
Downing, K.H.3
Baldwin, J.M.4
Henderson, R.5
-
7
-
-
0026723610
-
A photocycle of phoborhodopsin from haloalkaliphilic bacterium (Natronobacterium pharaonis) studied by low-temperature spectroscopy
-
Hirayama, J., Y. Iwamoto, Y. Shichida, N. Kamo, H. Tomioka, and T. Yoshizawa. 1992. A photocycle of phoborhodopsin from haloalkaliphilic bacterium (Natronobacterium pharaonis) studied by low-temperature spectroscopy. Biochemistry. 31:2093-2098.
-
(1992)
Biochemistry
, vol.31
, pp. 2093-2098
-
-
Hirayama, J.1
Iwamoto, Y.2
Shichida, Y.3
Kamo, N.4
Tomioka, H.5
Yoshizawa, T.6
-
9
-
-
0032963356
-
Purification of histidine tagged bacteriorhodopsin, pharaonis sensory rhodopsin II functionally expressed in Escherichia coli
-
Hohenfeld, I. P., A. Ansgar, A. Wegener, and M. Engelhard. 1999. Purification of histidine tagged bacteriorhodopsin, pharaonis sensory rhodopsin II functionally expressed in Escherichia coli. FEBS Lett. 442:198-202.
-
(1999)
FEBS Lett.
, vol.442
, pp. 198-202
-
-
Hohenfeld, I.P.1
Ansgar, A.2
Wegener, A.3
Engelhard, M.4
-
10
-
-
0001041520
-
15N NMR study on crystalline Leu- and Met-enkephalins: Distinction of polymorphs, backbone dynamics and local conformational rearrangements induced by dehydration or freezing motions of bound solvent molecules
-
15N NMR study on crystalline Leu- and Met-enkephalins: distinction of polymorphs, backbone dynamics and local conformational rearrangements induced by dehydration or freezing motions of bound solvent molecules. J. Phys. Chem. B. 102:2826-2834.
-
(1998)
J. Phys. Chem. B.
, vol.102
, pp. 2826-2834
-
-
Kamhira, M.1
Naito, A.2
Nishimura, K.3
Tuzi, S.4
Saitô, H.5
-
11
-
-
0035498353
-
Photochemistry and photoinduced proton-transfer by pharaonis phoborhodopsin
-
Kamo, N., K. Shimono, M. Iwamoto, and Y. Sudo. 2001. Photochemistry and photoinduced proton-transfer by pharaonis phoborhodopsin. Biochemistry (Moscow). 66:1277-1282.
-
(2001)
Biochemistry (Moscow)
, vol.66
, pp. 1277-1282
-
-
Kamo, N.1
Shimono, K.2
Iwamoto, M.3
Sudo, Y.4
-
12
-
-
0035822679
-
Structural changes of pharaonis phoborhodopsin upon photoisomerization of the retinal chromophore: Infrared spectral comparison with bacteriorhodopsin
-
Kandori, H., K. Shimono, Y. Sudo, M. Iwamoto, Y. Shichida, and N. Kamo. 2001. Structural changes of pharaonis phoborhodopsin upon photoisomerization of the retinal chromophore: infrared spectral comparison with bacteriorhodopsin. Biochemistry. 40:9238-9246.
-
(2001)
Biochemistry
, vol.40
, pp. 9238-9246
-
-
Kandori, H.1
Shimono, K.2
Sudo, Y.3
Iwamoto, M.4
Shichida, Y.5
Kamo, N.6
-
13
-
-
0034727635
-
13C NMR
-
13C NMR. Biochemistry. 39:14472-14480.
-
(2000)
Biochemistry
, vol.39
, pp. 14472-14480
-
-
Kawase, Y.1
Tanio, M.2
Kira, A.3
Yamaguchi, S.4
Tuzi, S.5
Naito, A.6
Kataoka, M.7
Lanyi, J.K.8
Needleman, R.9
Saltô, H.10
-
14
-
-
0037015003
-
Dynamic and clustering model of bacterial chemotaxis receptors: Structural basis for signaling and high sensitivity
-
Kim, S.-H., and K. K. Kim. 2002. Dynamic and clustering model of bacterial chemotaxis receptors: structural basis for signaling and high sensitivity. Proc. Natl. Acad. Sci. USA. 99:11611-11615.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 11611-11615
-
-
Kim, S.-H.1
Kim, K.K.2
-
15
-
-
0035148603
-
13C]Val-labeled transmembrane peptides of bacteriorhodopsin in lipid bilayers: Insertion, rigid-body motions, and local conformational fluctuations at ambient temperature
-
13C]Val-labeled transmembrane peptides of bacteriorhodopsin in lipid bilayers: insertion, rigid-body motions, and local conformational fluctuations at ambient temperature. Biopolymers. 58:78-88.
-
(2001)
Biopolymers
, vol.58
, pp. 78-88
-
-
Kimura, S.1
Naito, A.2
Tuzi, S.3
Saitô, H.4
-
16
-
-
0020489247
-
Infrared spectrum of the purple membrane: Clue to a proton conduction mechanism?
-
Krimm, S., and A. M. Dwivedi. 1982. Infrared spectrum of the purple membrane: clue to a proton conduction mechanism? Science. 216:407-408.
-
(1982)
Science
, vol.216
, pp. 407-408
-
-
Krimm, S.1
Dwivedi, A.M.2
-
17
-
-
0035957524
-
Electron crystallographic analysis of two-dimensional crystals of sensory rhodopsin II: A 6.9 Å projection structure
-
Kunji, E. R., E. N. Spudich, R. Grissharmer, R. Henderson, and J. L. Spudich. 2001. Electron crystallographic analysis of two-dimensional crystals of sensory rhodopsin II: a 6.9 Å projection structure. J. Mol. Biol. 308:279-293.
-
(2001)
J. Mol. Biol.
, vol.308
, pp. 279-293
-
-
Kunji, E.R.1
Spudich, E.N.2
Grissharmer, R.3
Henderson, R.4
Spudich, J.L.5
-
18
-
-
0032455636
-
Understanding structure in the light-driven proton pump bacteriorhodopsin
-
Lanyi, J. K. 1999. Understanding structure in the light-driven proton pump bacteriorhodopsin. J. Struct. Biol. 124:164-178.
-
(1999)
J. Struct. Biol.
, vol.124
, pp. 164-178
-
-
Lanyi, J.K.1
-
19
-
-
0030606898
-
Molecular revolution of the C-terminal cytoplasmic domain of a superfamily of bacterial receptors involved in taxis
-
Le Moual, H., and D. E. Koshland, Jr. 1996. Molecular revolution of the C-terminal cytoplasmic domain of a superfamily of bacterial receptors involved in taxis. J. Mol. Biol. 261:568-585.
-
(1996)
J. Mol. Biol.
, vol.261
, pp. 568-585
-
-
Le Moual, H.1
Koshland Jr., D.E.2
-
20
-
-
0037184003
-
Organization of the receptor-kinase signaling array that regulates Escherichia coli chemotaxis
-
Levit, M. N., T. W. Grebe, and J. B. Stock. 2002. Organization of the receptor-kinase signaling array that regulates Escherichia coli chemotaxis. J. Biol. Chem. 277:36748-36754.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 36748-36754
-
-
Levit, M.N.1
Grebe, T.W.2
Stock, J.B.3
-
21
-
-
0035943457
-
Crystal structure of sensory rhodopsin II at 2.4 Ångstroms: Insight into color tuning and transducer interaction
-
Luecke, H., B. Schobert, J. K. Lanyi, E. N. Spudich, and J. L. Spudich. 2001. Crystal structure of sensory rhodopsin II at 2.4 Ångstroms: insight into color tuning and transducer interaction. Science. 293:1499-1503.
-
(2001)
Science
, vol.293
, pp. 1499-1503
-
-
Luecke, H.1
Schobert, B.2
Lanyi, J.K.3
Spudich, E.N.4
Spudich, J.L.5
-
22
-
-
0033609904
-
Structure of bacteriothodopsin at 1.55 Å resolution
-
Luecke, H., B. Schobert, H.-T. Richter. J. P. Cartailler, and J. K. Lanyi. 1999. Structure of bacteriothodopsin at 1.55 Å resolution. J. Mol. Biol. 291:899-911.
-
(1999)
J. Mol. Biol.
, vol.291
, pp. 899-911
-
-
Luecke, H.1
Schobert, B.2
Richter, H.-T.3
Cartailler, J.P.4
Lanyi, J.K.5
-
23
-
-
0034608895
-
Differences in the polar clustering of the high- and low-abundance chemoreceptors of Escherichia coli
-
Lybarger, S. R., and J. R. Maddock. 2000. Differences in the polar clustering of the high- and low-abundance chemoreceptors of Escherichia coli. Proc. Natl. Acad. Sci. USA. 97:8057-8062.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 8057-8062
-
-
Lybarger, S.R.1
Maddock, J.R.2
-
24
-
-
36749105542
-
Transverse relaxation of dipolar coupled spin systems under RF irradiation
-
Rothwell, W. T., and J. S. Waugh. 1981. Transverse relaxation of dipolar coupled spin systems under RF irradiation. J. Chem. Phys. 75:2721-2732.
-
(1981)
J. Chem. Phys.
, vol.75
, pp. 2721-2732
-
-
Rothwell, W.T.1
Waugh, J.S.2
-
25
-
-
0035964365
-
X-ray structure of sensory rhodopsin II at 2.1-Å resolution
-
Royant, A., P. Nollert, K. Edman, R. Neutze, E. M. Landau, E. Pebay-Peyroula, and J. Navarro. 2001. X-ray structure of sensory rhodopsin II at 2.1-Å resolution. Proc. Natl. Acad. Sci. USA. 98:10131-10136.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 10131-10136
-
-
Royant, A.1
Nollert, P.2
Edman, K.3
Neutze, R.4
Landau, E.M.5
Pebay-Peyroula, E.6
Navarro, J.7
-
26
-
-
84989629173
-
13C chemical shifts: A new means of conformational characterization as obtained by high-resolution solid-state NMR
-
13C chemical shifts: a new means of conformational characterization as obtained by high-resolution solid-state NMR. Magn. Reson. Chem. 24:835-852.
-
(1986)
Magn. Reson. Chem.
, vol.24
, pp. 835-852
-
-
Saitô, H.1
-
27
-
-
77956853496
-
High-resolution solid-state NMR studies of synthetic and biological macromolecules
-
Saitô, H., and I. Ando. 1989. High-resolution solid-state NMR studies of synthetic and biological macromolecules. Annu. Rev. NMR Spectrosc. 21:209-290.
-
(1989)
Annu. Rev. NMR Spectrosc.
, vol.21
, pp. 209-290
-
-
Saitô, H.1
Ando, I.2
-
28
-
-
0842307672
-
13C]amino-acid residues
-
13C]amino-acid residues. Magn. Reson. Chem. 42:218-230.
-
(2004)
Magn. Reson. Chem.
, vol.42
, pp. 218-230
-
-
Saitô, H.1
Mikami, J.2
Yamaguchi, S.3
Tanio, M.4
Kira, A.5
Arakawa, T.6
Yamamoto, K.7
Tuzi, S.8
-
30
-
-
77956739241
-
Empirical versus nonempirical evaluation of secondary structure of fibrous and membrane proteins by solid-state NMR: A practical approach
-
Saitô, H., S. Tuzi, and A. Naito. 1998. Empirical versus nonempirical evaluation of secondary structure of fibrous and membrane proteins by solid-state NMR: a practical approach. Annu. Rev. NMR Spectrosc. 36:79-121.
-
(1998)
Annu. Rev. NMR Spectrosc.
, vol.36
, pp. 79-121
-
-
Saitô, H.1
Tuzi, S.2
Naito, A.3
-
34
-
-
0026827330
-
13C NMR study on collagens in the solid state: Hydration/dehydration-induced conformational change of collagen and detection of internal motions
-
13C NMR study on collagens in the solid state: hydration/dehydration-induced conformational change of collagen and detection of internal motions. J. Biochem. (Tokyo). 111:376-392.
-
(1992)
J. Biochem. (Tokyo)
, vol.111
, pp. 376-392
-
-
Saltô, H.1
Yokoi, M.2
-
35
-
-
0028965178
-
The primary structure of sensory rhodopsin II: A member of an additional retinal protein subgroup is coexpressed with its transducer, the halobacterial transducer of rhodopsin II
-
Seidel, R., B. Scharf, M. Gautel, K. Kleine, D. Oesterhelt, and M. Engelhard. 1995. The primary structure of sensory rhodopsin II: a member of an additional retinal protein subgroup is coexpressed with its transducer, the halobacterial transducer of rhodopsin II. Proc. Natl. Acad. Sci. USA. 92:3036-3040.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 3036-3040
-
-
Seidel, R.1
Scharf, B.2
Gautel, M.3
Kleine, K.4
Oesterhelt, D.5
Engelhard, M.6
-
36
-
-
0031583910
-
Functional expression of pharaonis phoborhodopsin in Escherichia coli
-
Shimono, K., M. Iwamoto, M. Sumi, and N. Kamo. 1997. Functional expression of pharaonis phoborhodopsin in Escherichia coli. FEBS Lett. 420:54-56.
-
(1997)
FEBS Lett.
, vol.420
, pp. 54-56
-
-
Shimono, K.1
Iwamoto, M.2
Sumi, M.3
Kamo, N.4
-
37
-
-
0034519206
-
Retinylidene proteins: Structures and functions from archaea to humans
-
Spudich, J. L., C. S. Yang, K. H. Jung, and E. N. Spudich. 2000. Retinylidene proteins: structures and functions from archaea to humans. Annu. Rev. Cell Dev. Biol. 16:365-392.
-
(2000)
Annu. Rev. Cell Dev. Biol.
, vol.16
, pp. 365-392
-
-
Spudich, J.L.1
Yang, C.S.2
Jung, K.H.3
Spudich, E.N.4
-
38
-
-
0035470682
-
Pharaonis phoborhodopsin binds to its cognate truncated transducer even in the presence of a detergent with a 1:1 stoichiometry
-
Sudo, Y., M. Iwamoto, K. Shimono, and N. Kamo. 2001b. Pharaonis phoborhodopsin binds to its cognate truncated transducer even in the presence of a detergent with a 1:1 stoichiometry. Photochem. Photobiol. 74:489-494.
-
(2001)
Photochem. Photobiol.
, vol.74
, pp. 489-494
-
-
Sudo, Y.1
Iwamoto, M.2
Shimono, K.3
Kamo, N.4
-
39
-
-
0037005737
-
Association of pharaonis phoborhodopsin with its cognate transducer decreases the photo-dependent reactivity by water-soluble reagents of azide and hydroxylamine
-
Sudo, Y., M. Iwamoto, K. Shimono, and N. Kamo. 2002. Association of pharaonis phoborhodopsin with its cognate transducer decreases the photo-dependent reactivity by water-soluble reagents of azide and hydroxylamine. Biochim. Biophys. Acta. 1558:63-69.
-
(2002)
Biochim. Biophys. Acta
, vol.1558
, pp. 63-69
-
-
Sudo, Y.1
Iwamoto, M.2
Shimono, K.3
Kamo, N.4
-
40
-
-
0035142193
-
Photo-induced proton transport of pharaonis phoborhodopsin (sensory rhodopsin II) is ceased by association with the transducer
-
Sudo, Y., M. Iwamoto, K. Shimono, M. Sumi, and N. Kamo. 2001a. Photo-induced proton transport of pharaonis phoborhodopsin (sensory rhodopsin II) is ceased by association with the transducer. Biophys. J. 80:916-922.
-
(2001)
Biophys. J.
, vol.80
, pp. 916-922
-
-
Sudo, Y.1
Iwamoto, M.2
Shimono, K.3
Sumi, M.4
Kamo, N.5
-
41
-
-
0000570050
-
Slow molecular motion detected in the NMR spectra of rotating solids
-
Suwelack, D., W. P. Rothwell, and J. S. Waugh. 1980. Slow molecular motion detected in the NMR spectra of rotating solids. J. Chem. Phys. 73:2559-2569.
-
(1980)
J. Chem. Phys.
, vol.73
, pp. 2559-2569
-
-
Suwelack, D.1
Rothwell, W.P.2
Waugh, J.S.3
-
42
-
-
0021873222
-
A photosystem other than PS370 also mediates the negative phototaxis of Halobacterium halobium
-
Takahashi, T., H. Tomioka, N. Kamo, and Y. Kobatake. 1985. A photosystem other than PS370 also mediates the negative phototaxis of Halobacterium halobium. FEMS Microbiol. Lett. 28:161-164.
-
(1985)
FEMS Microbiol. Lett.
, vol.28
, pp. 161-164
-
-
Takahashi, T.1
Tomioka, H.2
Kamo, N.3
Kobatake, Y.4
-
43
-
-
0022442116
-
Flash spectrophotometric identification of a fourth rhodopsin-like pigment in Halobacterium halobium
-
Tomioka, H., T. Takahashi, N. Kamo, and Y. Kobatake. 1986. Flash spectrophotometric identification of a fourth rhodopsin-like pigment in Halobacterium halobium. Biochem. Biophys. Res. Commun. 139:389-395.
-
(1986)
Biochem. Biophys. Res. Commun.
, vol.139
, pp. 389-395
-
-
Tomioka, H.1
Takahashi, T.2
Kamo, N.3
Kobatake, Y.4
-
45
-
-
0037059759
-
Sensing of cytoplasmic pH by bacterial chemoreceptors involves the linker region that connects the membrane-spanning and the signal-modulating helices
-
Umemura, T., Y. Matsumoto, K. Ohnishi, M. Homma, and I. Kawagishi. 2002. Sensing of cytoplasmic pH by bacterial chemoreceptors involves the linker region that connects the membrane-spanning and the signal-modulating helices. J. Biol. Chem. 277:1583-1598.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 1583-1598
-
-
Umemura, T.1
Matsumoto, Y.2
Ohnishi, K.3
Homma, M.4
Kawagishi, I.5
-
46
-
-
0034714097
-
Time-resolved detection of transient movement of helix F in spin-labelled pharaonis sensory rhodopsin II
-
Wegener, A.-A., I. Chizhov, M. Engelhard, and H.-J. Steinhoff. 2000. Time-resolved detection of transient movement of helix F in spin-labelled pharaonis sensory rhodopsin II. J. Mol. Biol. 301:881-891.
-
(2000)
J. Mol. Biol.
, vol.301
, pp. 881-891
-
-
Wegener, A.-A.1
Chizhov, I.2
Engelhard, M.3
Steinhoff, H.-J.4
-
47
-
-
0035477798
-
Structural insight into the early steps of receptor-transducer signal transfer in archaeal phototaxis
-
Wegener, A.-A., J. P. Klare, M. Engelhard, and H.-J. Steinhoff. 2001. Structural insight into the early steps of receptor-transducer signal transfer in archaeal phototaxis. EMBO J. 20:5312-5319.
-
(2001)
EMBO J.
, vol.20
, pp. 5312-5319
-
-
Wegener, A.-A.1
Klare, J.P.2
Engelhard, M.3
Steinhoff, H.-J.4
-
48
-
-
0031891376
-
13C NMR
-
13C NMR. J. Biochem. (Tokyo). 123:78-86.
-
(1998)
J. Biochem. (Tokyo)
, vol.123
, pp. 78-86
-
-
Yamaguchi, S.1
Tuzi, S.2
Seki, T.3
Tanio, M.4
Needleman, R.5
Lanyi, J.K.6
Naito, A.7
Saitô, H.8
-
51
-
-
2342428697
-
Light-induced structural changes occur in the transmembrane helices of the Natronobacterium pharaonis HtrII transducer
-
Yang, C. S., and J. L. Spudich. 2001. Light-induced structural changes occur in the transmembrane helices of the Natronobacterium pharaonis HtrII transducer. Biochemistry. 98:13655-13659.
-
(2001)
Biochemistry
, vol.98
, pp. 13655-13659
-
-
Yang, C.S.1
Spudich, J.L.2
-
53
-
-
0033514438
-
The specificity of interaction of archaeal transducers with their cognate sensory rhodopsins is determined by their transmembrane helices
-
Zhang, X.-N., J. Zhu, and J. L. Spudich. 1999. The specificity of interaction of archaeal transducers with their cognate sensory rhodopsins is determined by their transmembrane helices. Proc. Natl. Acad. Sci. USA. 96:857-862.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 857-862
-
-
Zhang, X.-N.1
Zhu, J.2
Spudich, J.L.3
|