-
1
-
-
13444272070
-
Biomolecular Interaction Network Database and related tools 2005 update
-
Alfarano, C., Andrade, C.E., Anthony, K., Bahroos, N., Bajec, M., Bantoft, K., et al. (2005) Biomolecular Interaction Network Database and related tools 2005 update. Nucleic Acids Res 33: D418-D424.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Alfarano, C.1
Andrade, C.E.2
Anthony, K.3
Bahroos, N.4
Bajec, M.5
Bantoft, K.6
-
2
-
-
0034069495
-
Gene Ontology: Tool for the unification of biology
-
Ashburner, M., Ball, C.A., Blake, J.A., Botstein, D., Butler, H., Cherry, J.M., et al. (2000) Gene Ontology: tool for the unification of biology. Nat Genet 25: 25-29.
-
(2000)
Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
-
3
-
-
13444282425
-
The Stanford Microarray Database accommodates additional microarray platforms and data formats
-
Ball, C.A., Awad, I.A., Demeter, J., Gollub, J., Hebert, J.M., Hernandez-Boussard, T., et al. (2005) The Stanford Microarray Database accommodates additional microarray platforms and data formats. Nucleic Acids Res 33: D580-D582.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Ball, C.A.1
Awad, I.A.2
Demeter, J.3
Gollub, J.4
Hebert, J.M.5
Hernandez-Boussard, T.6
-
4
-
-
13444304325
-
NCBI GEO: Mining millions of expression profiles - Database and tools
-
Barrett, T., Suzek, T.O., Troup, D.B., Wilhite, S.E., Ngau, W.C., Ledoux, P., et al. (2005) NCBI GEO: mining millions of expression profiles - database and tools. Nucleic Acids Res 33: D562-D566.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Barrett, T.1
Suzek, T.O.2
Troup, D.B.3
Wilhite, S.E.4
Ngau, W.C.5
Ledoux, P.6
-
5
-
-
18344396568
-
Minimum information about a microarray experiment (MIAME)-toward standards for microarray data
-
Brazma, A., Hingamp, P., Quackenbush, J., Sherlock, G., Spellman, P., Stoeckert, C., et al. (2001) Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat Genet 29: 365-371.
-
(2001)
Nat. Genet.
, vol.29
, pp. 365-371
-
-
Brazma, A.1
Hingamp, P.2
Quackenbush, J.3
Sherlock, G.4
Spellman, P.5
Stoeckert, C.6
-
6
-
-
6044249965
-
Saccharomyces genome database: Underlying principles and organisation
-
Dwight, S.S., Balakrishnan, R., Christie, K.R., Costanzo, M.C., Dolinski, K., Engel, S.R., et al. (2004) Saccharomyces genome database: underlying principles and organisation. Brief Bioinform 5: 9-22.
-
(2004)
Brief Bioinform.
, vol.5
, pp. 9-22
-
-
Dwight, S.S.1
Balakrishnan, R.2
Christie, K.R.3
Costanzo, M.C.4
Dolinski, K.5
Engel, S.R.6
-
8
-
-
0000649677
-
A translation approach to portable ontology specifications
-
Gruber, T.R. (1998) A translation approach to portable ontology specifications. Knowledge Acquisition 5: 21-66.
-
(1998)
Knowledge Acquisition
, vol.5
, pp. 21-66
-
-
Gruber, T.R.1
-
9
-
-
9144264843
-
GeneDB: A resource for prokaryotic and eukaryotic organisms
-
Hertz-Fowler, C., Peacock, C.S., Wood, V., Aslett, M., Kerhornou, A., Mooney, P., et al. (2004) GeneDB: a resource for prokaryotic and eukaryotic organisms. Nucleic Acids Res 32: D339-D343.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Hertz-Fowler, C.1
Peacock, C.S.2
Wood, V.3
Aslett, M.4
Kerhornou, A.5
Mooney, P.6
-
10
-
-
4344615591
-
From SHIQ and RDF to OWL: The making of a web ontology language
-
Horrocks, I., Patel-Schneider, P.F., and Van Harmelen, F. (2003) From SHIQ and RDF to OWL: the making of a web ontology language. Web Semantics: Science, Services and Agents on the World Wide Web 1: 7-26.
-
(2003)
Web Semantics: Science, Services and Agents on the World Wide Web
, vol.1
, pp. 7-26
-
-
Horrocks, I.1
Patel-Schneider, P.F.2
Van Harmelen, F.3
-
11
-
-
0347122079
-
CIBEX: Center for information biology gene expression database
-
Ikeo, K., Ishi, I.J., Tamura, T., Gojobori, T., and Tateno, Y. (2003) CIBEX: center for information biology gene expression database. C R Biol 326: 1079-1082.
-
(2003)
C. R. Biol.
, vol.326
, pp. 1079-1082
-
-
Ikeo, K.1
Ishi, I.J.2
Tamura, T.3
Gojobori, T.4
Tateno, Y.5
-
12
-
-
19944398727
-
A proposed framework for the description of plant metabolomics experiments and their results
-
Jenkins, H., Hardy, N., Beckmann, M., Draper, J., Smith, A.R., Taylor, J., et al. (2004) A proposed framework for the description of plant metabolomics experiments and their results. Nat Biotechnol 22: 1601-1606.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 1601-1606
-
-
Jenkins, H.1
Hardy, N.2
Beckmann, M.3
Draper, J.4
Smith, A.R.5
Taylor, J.6
-
13
-
-
3543116593
-
An object model and database for functional genomics
-
Jones, A., Hunt, E., Wastling, J., and Pizarro, A. Stoeckert, C.J., Jr (2004) An object model and database for functional genomics. Bioinformatics 20: 1583-1590.
-
(2004)
Bioinformatics
, vol.20
, pp. 1583-1590
-
-
Jones, A.1
Hunt, E.2
Wastling, J.3
Pizarro, A.4
Stoeckert Jr., C.J.5
-
14
-
-
0037015621
-
The Plasmodium genome database
-
Kissinger, J.C., Brunk, B.P., Crabtree, J., Fraunholz, M.J., Gajria, B., Milgram, A.J., et al. (2002) The Plasmodium genome database. Nature 419: 490-492.
-
(2002)
Nature
, vol.419
, pp. 490-492
-
-
Kissinger, J.C.1
Brunk, B.P.2
Crabtree, J.3
Fraunholz, M.J.4
Gajria, B.5
Milgram, A.J.6
-
15
-
-
0012306021
-
Apollo: A sequence annotation editor
-
research0082.1-0082.14
-
Lewis, S.E., Searle, S.M., Harris, N., Gibson, M., Lyer, V. Richter, J., et al. (2002). Apollo: a sequence annotation editor. Genome Biol 3: research0082.1-0082.14.
-
(2002)
Genome Biol.
, vol.3
-
-
Lewis, S.E.1
Searle, S.M.2
Harris, N.3
Gibson, M.4
Lyer, V.5
Richter, J.6
-
16
-
-
1542505287
-
RAD and the RAD Study-Annotator: An approach to collection, organization, and exchange of all relevant information for high-throughput gene expression studies
-
Manduchi, E., Grant, G.R., He, H., Liu, J., Mailman, M.D., Pizarro, A.D., et al. (2004) RAD and the RAD Study-Annotator: an approach to collection, organization, and exchange of all relevant information for high-throughput gene expression studies. Bioinformatics 20: 452-459.
-
(2004)
Bioinformatics
, vol.20
, pp. 452-459
-
-
Manduchi, E.1
Grant, G.R.2
He, H.3
Liu, J.4
Mailman, M.D.5
Pizarro, A.D.6
-
17
-
-
0038305892
-
The proteomics standards initiative
-
Orchard, S., Hermjakob, H., and Apweiler, R. (2003) The proteomics standards initiative. Proteomics 3: 1374-1376.
-
(2003)
Proteomics
, vol.3
, pp. 1374-1376
-
-
Orchard, S.1
Hermjakob, H.2
Apweiler, R.3
-
18
-
-
20144387067
-
The MIPS mammalian protein-protein interaction database
-
Pagel, P., Kovac, S., Oesterheld, M., Brauner, B., Dunger-Kaltenbach, I., Frishman, G., et al. (2004) The MIPS mammalian protein-protein interaction database. Bioinformatics 21: 832-834.
-
(2004)
Bioinformatics
, vol.21
, pp. 832-834
-
-
Pagel, P.1
Kovac, S.2
Oesterheld, M.3
Brauner, B.4
Dunger-Kaltenbach, I.5
Frishman, G.6
-
19
-
-
13444249955
-
ArrayExpress - A public repository for microarray gene expression data at the EBI
-
Parkinson, H., Sarkans, U., Shojatalab, M., Abeygunawardena, N., Contrino, S., Coulson, R., et al. (2005) ArrayExpress - a public repository for microarray gene expression data at the EBI. Nucleic Acids Res 33: D553-D555.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Parkinson, H.1
Sarkans, U.2
Shojatalab, M.3
Abeygunawardena, N.4
Contrino, S.5
Coulson, R.6
-
20
-
-
18144436897
-
Web-accessible proteome databases for microbial research
-
Pleissner, K.P., Eifert, T., Buettner, S., Schmidt, F., Boehme, M., Meyer, T.F., et al. (2004) Web-accessible proteome databases for microbial research. Proteomics 4: 1305-1313.
-
(2004)
Proteomics
, vol.4
, pp. 1305-1313
-
-
Pleissner, K.P.1
Eifert, T.2
Buettner, S.3
Schmidt, F.4
Boehme, M.5
Meyer, T.F.6
-
21
-
-
1842424944
-
The need for a public proteomics repository
-
Prince, J.T., Carlson, M.W., Wang, R., Lu, P., and Marcotte, E.M. (2004) The need for a public proteomics repository. Nat Biotechnol 22: 471-472.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 471-472
-
-
Prince, J.T.1
Carlson, M.W.2
Wang, R.3
Lu, P.4
Marcotte, E.M.5
-
22
-
-
0346801872
-
CryptoDB: The Cryptosporidium genome resource
-
Puiu, D., Enomoto, S., Buck, G.A., Abrahamsen, M.S., and Kissinger, J.C. (2004) CryptoDB: the Cryptosporidium genome resource. Nucleic Acids Res 32: D329-D331.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Puiu, D.1
Enomoto, S.2
Buck, G.A.3
Abrahamsen, M.S.4
Kissinger, J.C.5
-
23
-
-
0033635022
-
Artemis: Sequence visualization and annotation
-
Rutherford, K., Parkhill, J., Crook, J., Horsnell, T., Rice, P., Rajandream, M.A., et al. (2000) Artemis: sequence visualization and annotation. Bioinformatics 16: 944-945.
-
(2000)
Bioinformatics
, vol.16
, pp. 944-945
-
-
Rutherford, K.1
Parkhill, J.2
Crook, J.3
Horsnell, T.4
Rice, P.5
Rajandream, M.A.6
-
24
-
-
0347755535
-
The database of interacting proteins: 2004 update
-
Salwinski, L., Miller, C.S., Smith, A.J., Pettit, F.K., Bowie, J.U., and Eisenberg, D. (2004) The database of interacting proteins: 2004 update. Nucleic Acids Res 32: D449-D451.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Salwinski, L.1
Miller, C.S.2
Smith, A.J.3
Pettit, F.K.4
Bowie, J.U.5
Eisenberg, D.6
-
25
-
-
0037163144
-
Design and implementation of mlcroarray gene expression markup language (MAGEML)
-
research0046.1-0082.9
-
Spellman, P.T., Miller, M., Stewart, J., Troup, C., Sarkans, U., Chervitz, S., et al. (2002) Design and implementation of mlcroarray gene expression markup language (MAGEML). Genome Biology 3: research0046.1-0082.9.
-
(2002)
Genome Biology
, vol.3
-
-
Spellman, P.T.1
Miller, M.2
Stewart, J.3
Troup, C.4
Sarkans, U.5
Chervitz, S.6
-
26
-
-
18644378331
-
The generic genome browser: A building block for a model organism system database
-
Stein, L.D., Mungall, C., Shu, S., Caudy, M., Mangone, M., Day, A., et al. (2002) The generic genome browser: a building block for a model organism system database. Genome Res 12: 1599-1610.
-
(2002)
Genome Res.
, vol.12
, pp. 1599-1610
-
-
Stein, L.D.1
Mungall, C.2
Shu, S.3
Caudy, M.4
Mangone, M.5
Day, A.6
-
27
-
-
0037294354
-
The MGED Ontology: A framework for describing functional genomics experiments
-
Stoeckert, C.J., Jr, and Parkinson, H. (2003) The MGED Ontology: a framework for describing functional genomics experiments. Comparative and Functional Genomics 4: 127-132.
-
(2003)
Comparative and Functional Genomics
, vol.4
, pp. 127-132
-
-
Stoeckert Jr., C.J.1
Parkinson, H.2
-
28
-
-
12344319205
-
Minimum information about a functional genomics experiment: The state of microarray standards and their extension to other technologies
-
Stoeckert, C.J., Jr, Quackenbush, J., Brazma, A., and Ball, C. (2004) Minimum information about a functional genomics experiment: the state of microarray standards and their extension to other technologies. Drug Discovery Today: TARGETS 3: 159-164.
-
(2004)
Drug Discovery Today: TARGETS
, vol.3
, pp. 159-164
-
-
Stoeckert Jr., C.J.1
Quackenbush, J.2
Brazma, A.3
Ball, C.4
-
29
-
-
3543151034
-
CEBS object model for systems biology data, SysBio-OM
-
Xirasagar, S., Gustafson, S., Merrick, B.A., Tomer, K.B., Stasiewicz, S., Chan, D. D., et al. (2004) CEBS object model for systems biology data, SysBio-OM. Bioinformatics 20: 2004-2015.
-
(2004)
Bioinformatics
, vol.20
, pp. 2004-2015
-
-
Xirasagar, S.1
Gustafson, S.2
Merrick, B.A.3
Tomer, K.B.4
Stasiewicz, S.5
Chan, D.D.6
-
30
-
-
0037138406
-
MINT: A Molecular INTeraction database
-
Zanzoni, A., Montecchi-Palazzi, L., Quondam, M., Ausiello, G., Helmer-Citterich, M., and Cesareni, G. (2002) MINT: a Molecular INTeraction database. FEBS Lett 513: 135-140.
-
(2002)
FEBS Lett.
, vol.513
, pp. 135-140
-
-
Zanzoni, A.1
Montecchi-Palazzi, L.2
Quondam, M.3
Ausiello, G.4
Helmer-Citterich, M.5
Cesareni, G.6
|