-
1
-
-
0037388094
-
Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae
-
Arava, Y., Wang, Y., Storey, J.D., Liu, C.L., Brown, P.O., and Herschlag, D. 2003. Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. 100: 3889-3894.
-
(2003)
Proc. Natl. Acad. Sci.
, vol.100
, pp. 3889-3894
-
-
Arava, Y.1
Wang, Y.2
Storey, J.D.3
Liu, C.L.4
Brown, P.O.5
Herschlag, D.6
-
2
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
Bartel, D.P. 2004. MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
3
-
-
0034543678
-
Picornavirus IRESes and the poly(A) tail jointly promote cap-independent translation in a mammalian cell-free system
-
Bergamini, G., Preiss, T., and Hentze, M.W. 2000. Picornavirus IRESes and the poly(A) tail jointly promote cap-independent translation in a mammalian cell-free system. RNA 6: 1781-1790.
-
(2000)
RNA
, vol.6
, pp. 1781-1790
-
-
Bergamini, G.1
Preiss, T.2
Hentze, M.W.3
-
4
-
-
32744455416
-
Analysis of RNA exonucleolytic activities in cellular extracts
-
ed. D.R. Schoenberg, Humana Press, Totowa, NJ
-
Bergman, N., Milone, J., Bates, E.J., Opyrchal, M., Bellofatto, V., and Wilusz, J. 2004. Analysis of RNA exonucleolytic activities in cellular extracts. In mRNA processing and metabolism; Methods and protocols (ed. D.R. Schoenberg), pp. 193-211. Humana Press, Totowa, NJ.
-
(2004)
mRNA Processing and Metabolism; Methods and Protocols
, pp. 193-211
-
-
Bergman, N.1
Milone, J.2
Bates, E.J.3
Opyrchal, M.4
Bellofatto, V.5
Wilusz, J.6
-
5
-
-
0037184089
-
Free poly(A) stimulates capped mRNA translation in vitro through the eIF4G-poly(A)-binding protein interaction
-
Borman, A.M., Michel, Y.M., Malnou, C.E., and Kean, K.M. 2002. Free poly(A) stimulates capped mRNA translation in vitro through the eIF4G-poly(A)-binding protein interaction. J. Biol. Chem. 277: 36818-36824.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 36818-36824
-
-
Borman, A.M.1
Michel, Y.M.2
Malnou, C.E.3
Kean, K.M.4
-
6
-
-
0038133335
-
Purifying mRNAs with a highaffinity eIF4E mutant identifies the short 3′ poly(A) end phenotype
-
Choi, Y.H. and Hagedorn, C.H. 2003. Purifying mRNAs with a highaffinity eIF4E mutant identifies the short 3′ poly(A) end phenotype. Proc. Natl. Acad. Sci. 100: 7033-7038.
-
(2003)
Proc. Natl. Acad. Sci.
, vol.100
, pp. 7033-7038
-
-
Choi, Y.H.1
Hagedorn, C.H.2
-
7
-
-
0035282876
-
Polysomal ribonuclease 1 exists in a latent form on polysomes prior to estrogen activation of mRNA decay
-
Cunningham, K.S., Hanson, M.N., and Schoenberg, D.R. 2001. Polysomal ribonuclease 1 exists in a latent form on polysomes prior to estrogen activation of mRNA decay. Nucleic Acids Res. 29: 1156-1162.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 1156-1162
-
-
Cunningham, K.S.1
Hanson, M.N.2
Schoenberg, D.R.3
-
8
-
-
0344301945
-
Identification of two cis-acting elements that independently regulate the length of poly(A) on Xenopus albumin pre-mRNA
-
Das Gupta, J., Gu, H., Chernokalskaya, E., Gao, X., and Schoenberg, D.R. 1998. Identification of two cis-acting elements that independently regulate the length of poly(A) on Xenopus albumin pre-mRNA. RNA 4: 766-776.
-
(1998)
RNA
, vol.4
, pp. 766-776
-
-
Das Gupta, J.1
Gu, H.2
Chernokalskaya, E.3
Gao, X.4
Schoenberg, D.R.5
-
9
-
-
0034951833
-
Position and sequence requirements for poly(A) length regulation by the poly(A) limiting element
-
Das Gupta, J., Gu, H., and Schoenberg, D.R. 2001. Position and sequence requirements for poly(A) length regulation by the poly(A) limiting element. RNA 7: 1034-1042.
-
(2001)
RNA
, vol.7
, pp. 1034-1042
-
-
Das Gupta, J.1
Gu, H.2
Schoenberg, D.R.3
-
10
-
-
0030836448
-
Overexpression in COS cells of p50, the major core protein associated with mRNA, results in translation inhibition
-
Davydova, E.K., Evdokimova, V.M., Ovchinnikov, L.P., and Hershey, J.W. 1997. Overexpression in COS cells of p50, the major core protein associated with mRNA, results in translation inhibition. Nucleic Acids Res. 25: 2911-2916.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 2911-2916
-
-
Davydova, E.K.1
Evdokimova, V.M.2
Ovchinnikov, L.P.3
Hershey, J.W.4
-
11
-
-
0032898467
-
The association of initiation factor 4F with poly(A)-binding protein is enhanced in serum-stimulated Xenopus kidney cells
-
Fraser, C.S., Pain, V.M., and Morley, S.J. 1999. The association of initiation factor 4F with poly(A)-binding protein is enhanced in serum-stimulated Xenopus kidney cells. J. Biol. Chem. 274: 196-204.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 196-204
-
-
Fraser, C.S.1
Pain, V.M.2
Morley, S.J.3
-
12
-
-
0026038913
-
The cap and poly(A) tail function synergistically to regulate mRNA translational efficiency
-
Gallie, D.R. 1991. The cap and poly(A) tail function synergistically to regulate mRNA translational efficiency. Genes & Dev. 5: 2108-2116.
-
(1991)
Genes & Dev.
, vol.5
, pp. 2108-2116
-
-
Gallie, D.R.1
-
13
-
-
0028340737
-
The mRNA poly(A)-binding protein - Localization, abundance, and RNA-binding specificity
-
Gorlach, M., Burd, C.G., and Dreyfuss, G. 1994. The mRNA poly(A)-binding protein - Localization, abundance, and RNA-binding specificity. Exp. Cell Res. 211: 400-407.
-
(1994)
Exp. Cell Res.
, vol.211
, pp. 400-407
-
-
Gorlach, M.1
Burd, C.G.2
Dreyfuss, G.3
-
14
-
-
0034282752
-
Multiple portions of poly(A)-binding protein stimulate translation in vivo
-
Gray, N.K., Coller, J.M., Dickson, K.S., and Wickens, M. 2000. Multiple portions of poly(A)-binding protein stimulate translation in vivo. EMBO J. 19: 4723-4733.
-
(2000)
EMBO J.
, vol.19
, pp. 4723-4733
-
-
Gray, N.K.1
Coller, J.M.2
Dickson, K.S.3
Wickens, M.4
-
15
-
-
0345305373
-
U2AF modulates poly(A) length control by the poly(A)-limiting element
-
Gu, H. and Schoenberg, D.R. 2003. U2AF modulates poly(A) length control by the poly(A)-limiting element. Nucleic Acids Res. 31: 6264-6271.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 6264-6271
-
-
Gu, H.1
Schoenberg, D.R.2
-
16
-
-
13044313468
-
The poly(A)-limiting element is a conserved cis-acting sequence that regulates the length of poly(A) on nuclear pre-mRNAs
-
Gu, H., Das Gupta, J., and Schoenberg, D.R. 1999. The poly(A)-limiting element is a conserved cis-acting sequence that regulates the length of poly(A) on nuclear pre-mRNAs. Proc. Natl. Acad. Sci. 96: 8943-8948.
-
(1999)
Proc. Natl. Acad. Sci.
, vol.96
, pp. 8943-8948
-
-
Gu, H.1
Das Gupta, J.2
Schoenberg, D.R.3
-
17
-
-
11844281461
-
Mammalian poly(A)-binding protein is a eukaryotic translation initiation factor, which acts via multiple mechanisms
-
Kahvejian, A., Svitkin, Y.V., Sukarieh, R., M'Boutchou, M.N., and Sonenberg, N. 2005. Mammalian poly(A)-binding protein is a eukaryotic translation initiation factor, which acts via multiple mechanisms. Genes & Dev. 19: 104-113.
-
(2005)
Genes & Dev.
, vol.19
, pp. 104-113
-
-
Kahvejian, A.1
Svitkin, Y.V.2
Sukarieh, R.3
M'Boutchou, M.N.4
Sonenberg, N.5
-
18
-
-
0035109013
-
Translational repression by a novel partner of human poly(A) binding protein, Paip2
-
Khaleghpour, K., Svitkin, Y.V., Craig, A.W., Demaria, C.T., Deo, R.C., Burley, S.K., and Sonenberg, N. 2001. Translational repression by a novel partner of human poly(A) binding protein, Paip2. Mol. Cell 7: 205-216.
-
(2001)
Mol. Cell
, vol.7
, pp. 205-216
-
-
Khaleghpour, K.1
Svitkin, Y.V.2
Craig, A.W.3
Demaria, C.T.4
Deo, R.C.5
Burley, S.K.6
Sonenberg, N.7
-
19
-
-
0024693747
-
Definition of an efficient synthetic poly(A) site
-
Levitt, N., Briggs, D., Gil, A., and Proudfoot, N.J. 1989. Definition of an efficient synthetic poly(A) site. Genes & Dev. 3: 1019-1025.
-
(1989)
Genes & Dev.
, vol.3
, pp. 1019-1025
-
-
Levitt, N.1
Briggs, D.2
Gil, A.3
Proudfoot, N.J.4
-
20
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
Lewis, B.P., Burge, C.B., and Bartel, D.P. 2005. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120: 15-20.
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
21
-
-
0038487811
-
Poly(A)-binding proteins: Multifunctional scaffolds for the posttranscriptional control of gene expression
-
Mangus, D.A., Evans, M.C., and Jacobson, A. 2003. Poly(A)-binding proteins: Multifunctional scaffolds for the posttranscriptional control of gene expression. Genome Biol. 4: 223.1-223.14.
-
(2003)
Genome Biol.
, vol.4
-
-
Mangus, D.A.1
Evans, M.C.2
Jacobson, A.3
-
22
-
-
0025310854
-
mRNA poly(A) tail, a 3′ enhancer of translational initiation
-
Munroe, D. and Jacobson, A. 1990. mRNA poly(A) tail, a 3′ enhancer of translational initiation. Mol. Cell. Biol. 10: 3441-3455.
-
(1990)
Mol. Cell. Biol.
, vol.10
, pp. 3441-3455
-
-
Munroe, D.1
Jacobson, A.2
-
23
-
-
21844458199
-
The poly(A)-limiting element enhances mRNA accumulation by increasing the efficiency of pre-mRNA 3′ processing
-
Peng, J., Murray, E.L., and Schoenberg, D.R. 2005. The poly(A)-limiting element enhances mRNA accumulation by increasing the efficiency of pre-mRNA 3′ processing. RNA 11: 958-965.
-
(2005)
RNA
, vol.11
, pp. 958-965
-
-
Peng, J.1
Murray, E.L.2
Schoenberg, D.R.3
-
24
-
-
0031759964
-
Poly(A)-tail-promoted translation in yeast: Implications for translational control
-
Preiss, T., Muckenthaler, M., and Hentze, M.W. 1998. Poly(A)-tail- promoted translation in yeast: Implications for translational control. RNA 4: 1321-1331.
-
(1998)
RNA
, vol.4
, pp. 1321-1331
-
-
Preiss, T.1
Muckenthaler, M.2
Hentze, M.W.3
-
25
-
-
0029853015
-
Regulated nuclear polyadenylation of Xenopus albumin pre-mRNA
-
Rao, M.N., Chernokalskaya, E., and Schoenberg, D.R. 1996. Regulated nuclear polyadenylation of Xenopus albumin pre-mRNA. Nucleic Acids Res. 24: 4078-4083.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 4078-4083
-
-
Rao, M.N.1
Chernokalskaya, E.2
Schoenberg, D.R.3
-
26
-
-
0001902617
-
Regulation of ribosomal recruitment in eukaryotes
-
eds. N. Sonenberg et al., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Raught, B., Gingras, A.C., and Sonenberg, N. 2000. Regulation of ribosomal recruitment in eukaryotes. In Translational control of gene expression (eds. N. Sonenberg et al.), pp. 245-293. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(2000)
Translational Control of Gene Expression
, pp. 245-293
-
-
Raught, B.1
Gingras, A.C.2
Sonenberg, N.3
-
27
-
-
0023405161
-
A single domain of yeast poly(A)-binding protein is necessary and sufficient for RNA binding and cell viability
-
Sachs, A.B. 1987. A single domain of yeast poly(A)-binding protein is necessary and sufficient for RNA binding and cell viability. Mol. Cell. Biol. 7: 3268-3276.
-
(1987)
Mol. Cell. Biol.
, vol.7
, pp. 3268-3276
-
-
Sachs, A.B.1
-
28
-
-
0002411516
-
Physical and functional interactions between the mRNA cap structure and the poly(A) tail
-
eds. N. Sonenberg et al., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
_. 2000. Physical and functional interactions between the mRNA cap structure and the poly(A) tail. In Translational control of gene expression (eds. N. Sonenberg et al.), pp. 447-465. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(2000)
Translational Control of Gene Expression
, pp. 447-465
-
-
-
29
-
-
0032864002
-
Assaying the polyadenylation state of mRNAs
-
Salles, F.J., Richards, W.G., and Strickland, S. 1999. Assaying the polyadenylation state of mRNAs. Methods 17: 38-45.
-
(1999)
Methods
, vol.17
, pp. 38-45
-
-
Salles, F.J.1
Richards, W.G.2
Strickland, S.3
-
30
-
-
0024598971
-
Extranuclear estrogen-regulated destabilization of Xenopus laevis serum albumin mRNA
-
Schoenberg, D.R., Moskaitis, J.E., Smith Jr., J.H., and Pastori, R.L. 1989. Extranuclear estrogen-regulated destabilization of Xenopus laevis serum albumin mRNA. Mol. Endocrinol. 3: 805-814.
-
(1989)
Mol. Endocrinol.
, vol.3
, pp. 805-814
-
-
Schoenberg, D.R.1
Moskaitis, J.E.2
Smith Jr., J.H.3
Pastori, R.L.4
-
31
-
-
0037968357
-
Decapping and decay of messenger RNA occur in cytoplasmic processing bodies
-
Sheth, U. and Parker, R. 2003. Decapping and decay of messenger RNA occur in cytoplasmic processing bodies. Science 300: 805-808.
-
(2003)
Science
, vol.300
, pp. 805-808
-
-
Sheth, U.1
Parker, R.2
-
32
-
-
2142826526
-
An efficient system for cap- and poly(A)-dependent translation in vitro
-
ed. D.R. Schoenberg, Humana Press, Totowa, NJ
-
Svitkin, Y. and Sonenberg, N. 2004. An efficient system for cap- and poly(A)-dependent translation in vitro. In mRNA processing and metabolism; Methods and protocols (ed. D.R. Schoenberg), pp. 155-170. Humana Press, Totowa, NJ.
-
(2004)
mRNA Processing and Metabolism; Methods and Protocols
, pp. 155-170
-
-
Svitkin, Y.1
Sonenberg, N.2
-
33
-
-
0030797564
-
Translation initiation factor eIF4G mediates in vitro poly(A) tail-dependent translation
-
Tarun Jr., S.Z., Wells, S.E., Deardorff, J.A., and Sachs, A.B. 1997. Translation initiation factor eIF4G mediates in vitro poly(A) tail-dependent translation. Proc. Natl. Acad. Sci. 94: 9046-9051.
-
(1997)
Proc. Natl. Acad. Sci.
, vol.94
, pp. 9046-9051
-
-
Tarun Jr., S.Z.1
Wells, S.E.2
Deardorff, J.A.3
Sachs, A.B.4
-
34
-
-
0001818234
-
Mechanisms of mRNA turnover in eukaryotic cells
-
eds. J. Harford and D.R. Morris, Wiley, New York
-
Tharun S. and Parker, R. 1997. Mechanisms of mRNA turnover in eukaryotic cells. In mRNA metabolism and post-transcriptional gene regulation (eds. J. Harford and D.R. Morris), pp. 181-200. Wiley, New York.
-
(1997)
mRNA Metabolism and Post-transcriptional Gene Regulation
, pp. 181-200
-
-
Tharun, S.1
Parker, R.2
-
35
-
-
0035930337
-
Targeting an mRNA for decapping: Displacement of translation factors and association of the Lsm1p-7p complex on deadenylated yeast mRNAs
-
_. 2001. Targeting an mRNA for decapping: Displacement of translation factors and association of the Lsm1p-7p complex on deadenylated yeast mRNAs. Mol. Cell 8: 1075-1083.
-
(2001)
Mol. Cell
, vol.8
, pp. 1075-1083
-
-
-
36
-
-
4644351957
-
Enhancement of IRES-mediated translation of the c-myc and BiP mRNAs by the poly(A) tail is independent of intact eIF4G and PABP
-
Thoma, C., Bergamini, G., Galy, B., Hundsdoerfer, P., and Hentze, M.W. 2004a. Enhancement of IRES-mediated translation of the c-myc and BiP mRNAs by the poly(A) tail is independent of intact eIF4G and PABP. Mol. Cell 15: 925-935.
-
(2004)
Mol. Cell
, vol.15
, pp. 925-935
-
-
Thoma, C.1
Bergamini, G.2
Galy, B.3
Hundsdoerfer, P.4
Hentze, M.W.5
-
37
-
-
2142760951
-
A poly(A) tail-responsive in vitro system for cap- or IRES-driven translation from HeLa cells
-
ed. D.R. Schoenberg, Humana Press, Totowa, NJ
-
Thoma, C., Ostareck-Lederer, A., and Hentze, M.W. 2004b. A poly(A) tail-responsive in vitro system for cap- or IRES-driven translation from HeLa cells. In mRNA processing and metabolism; Methods and protocols (ed. D.R. Schoenberg), pp. 171-180. Humana Press, Totowa, NJ.
-
(2004)
mRNA Processing and Metabolism; Methods and Protocols
, pp. 171-180
-
-
Thoma, C.1
Ostareck-Lederer, A.2
Hentze, M.W.3
-
38
-
-
0030200219
-
The biochemistry of polyadenylation
-
Wahle, E. and Keller, W. 1996. The biochemistry of polyadenylation. Trends Biochem. Sci. 21: 247-250.
-
(1996)
Trends Biochem. Sci.
, vol.21
, pp. 247-250
-
-
Wahle, E.1
Keller, W.2
-
39
-
-
2442419461
-
Endonuclease-mediated mRNA decay involves the selective targeting of PMR1 to polyribosomebound substrate mRNA
-
Yang, F. and Schoenberg, D.R. 2004. Endonuclease-mediated mRNA decay involves the selective targeting of PMR1 to polyribosomebound substrate mRNA. Mol. Cell 14: 435-445.
-
(2004)
Mol. Cell
, vol.14
, pp. 435-445
-
-
Yang, F.1
Schoenberg, D.R.2
|