Phasing diffraction data from a stream of hydrated proteins

Journal of the Optical Society of America A: Optics and Image Science, and Vision

Volumn 22, Issue 7, 2005, Pages 1453-1459

  Wu, Jin Song ^a   Spence, John C H ^a,b  

^a ARIZONA STATE UNIVERSITY   (United States)

^b Materials Science   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHMS; COMPUTER SIMULATION; CRYSTALLOGRAPHY; FOURIER TRANSFORMS; ITERATIVE METHODS; LASER BEAMS;

DIFFRACTION PATTERNS; HYBRID INPUT-OUTPUT ALGORITHMS;

DIFFRACTION GRATINGS;

MULTIPROTEIN COMPLEX; PROTEIN; WATER;

ALGORITHM; ARTICLE; CHEMISTRY; COMPUTER ASSISTED DIAGNOSIS; EVALUATION; IMAGE ENHANCEMENT; INFORMATION RETRIEVAL; METHODOLOGY; PHASE TRANSITION; PROTEIN CONFORMATION; REFRACTOMETRY; ULTRASTRUCTURE;

ALGORITHMS; IMAGE ENHANCEMENT; IMAGE INTERPRETATION, COMPUTER-ASSISTED; INFORMATION STORAGE AND RETRIEVAL; MULTIPROTEIN COMPLEXES; PHASE TRANSITION; PROTEIN CONFORMATION; PROTEINS; REFRACTOMETRY; WATER;

EID: 22244457990     PISSN: 10847529     EISSN: None     Source Type: Journal    
DOI: 10.1364/JOSAA.22.001453     Document Type: Article

References (22)

1. J. C. H. Spence and B. Doak, "Single molecule diffraction," Phys. Rev. Lett. 92, 198102 (2004).
2. J. C. H. Spence, K. Schmidt, J. S. Wu, G. Hembree, U. Weierstall, B. Doak, and P. Fromme, "Diffraction and imaging from a beam of laser-aligned proteins: resolution limits," Acta Crystallogr. Sect. A Found. Crystallogr. 61, 237-245 (2005).
3. H. Stapelfeldt and T. Seideman, "Colloquium: aligning molecules with strong laser pulses," Rev. Mod. Phys. 75, 543-557 (2003).
4. H. Sakai, S. Minemoto, H. Nanjo, H. Tanji, and T. Suzuki, "Controlling the orientation of polar molecules with combined electrostatic and pulsed nonresonant laser fields," Phys. Rev. Lett. 90, 083001 (2003).
5. L. S. Bartell and J. Huang, "Supercooling of water below the anomalous range near 226 K," J. Phys. Chem. 90, 7455-7457 (1994).
6. M. Faubel, S. Schlemmer, and J. P. Toennies, "A molecular-beam study of the evaporation of water from a liquid jet," Z. Phys. D At. Mol. Clusters 10, 269-277 (1988).
7. J. M. Zuo, I. Vartanyants, M. Gao, R. Zhang, and L. A. Nagahara, "Atomic resolution imaging of a carbon nanotube from diffraction intensities," Science 300, 1419-1421 (2003).
8. H. He, S. Marchesini, M. Howells, U. Weierstall, G. Hembree, and J. C. H. Spence, "Experimental lensless soft-x-ray imaging using iterative algorithms: phasing diffuse scattering," Acta Crystallogr. Sect. A Found. Crystallogr. 59, 143-152 (2003).
9. S. Marchesini, H. He, H. Chapman, S. Hau-Riege, A. Noy, M. Howells, U. Weierstall, and J. C. H. Spence, "X-ray image reconstruction from a diffraction pattern alone," Phys. Rev. B 68, 140101 (2003).
10. R. W. Gerchberg and W. O. Saxton, "Practical algorithm for determination of phase from image and diffraction plane pictures," Optik (Stuttgart) 35, 237-246 (1972).
11. J. R. Fienup, "Phase retrieval algorithms: a comparison," Appl. Opt. 21, 2758-2769 (1982).
12. J. W. Miao, C. Charalambous, J. Kirz, and D. Sayre, "Extending the methodology of x-ray crystallography to allow imaging of micrometre-sized non-crystalline specimens," Nature (London) 400, 342-344 (1999).
13. J. Miao and D. Sayre, "On possible extensions of x-ray crystallography through diffraction-pattern oversampling," Acta Crystallogr. Sect. A Found. Crystallogr. 56, 596-605 (2000).
14. U. Weierstall, Q. Chen, J. C. H. Spence, M. Howells, M. Isaacson, and R. R. Panepucci, "Image reconstruction from electron and x-ray diffraction patterns using iterative algorithms: experiment and simulation," Ultramicroscopy 90, 171-195 (2001).
15. G. Oszlányi and A. Süto, "Ab initio structure solution by charge fiipping," Acta Crystallogr. Sect. A Found. Crystallogr. 60, 134-141 (2004).
16. J. S. Wu, J. C. H. Spence, M. O'Keeffe, and T. Groy, "Application of a modified Oszlányi and Süto Ab initio charge-flipping algorithm to experimental data," Acta Crystallogr. Sect. A Found. Crystallogr. 60 326-330 (2004).
17. J. S. Wu, U. Weierstall, J. C. H. Spence, and C. T. Koch, "Iterative phase retrieval without support," Opt. Lett. 29, 2737-2739 (2004).
18. M. van Heel, B. Gowen, R. Matadeen, E. V. Orlova, R. Finn, T. Pape, D. Cohen, H. Stark, R. Schmidt, M. Schatz, and A. Patwardhan, "Single-particle electron cryo-microscopy: towards atomic resolution," Q. Rev. Biophys. 33, 307-369 (2000).
19. T. Ruiz, J. L. Ranck, R. Diaz-Avalos, D. L. D. Caspar, and D. J. DeRosier, "Electron diffraction of helical particles," Ultramicroscopy 55, 383-395 (1994).
20. R. Diamond, "Real-space refinement of structure of hen egg-white lysozyme," J. Mol. Biol. 82, 371-391 (1974).
21. S. W. Peterson and H. A. Levy, "A single-crystal neutron diffraction study of heavy ice," Acta Crystallogr. 10, 70-76 (1957).
22. Y. Teshima and T. Ogama, "Dense packing of equal circles on a sphere by the minimum-zenith method: symmetrical arrangement," Forma 15, 347-364 (2000).