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Volumn 151, Issue 7, 2005, Pages 2125-2132

Databases and software for the comparison of prokaryotic genomes

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL CHROMOSOME; BACTERIAL GENOME; BACTERIAL MUTATION; BACTERIAL STRAIN; BACTERIUM ISOLATE; COMPUTER PROGRAM; ESCHERICHIA COLI; GENE SEQUENCE; GENETIC ALGORITHM; GENETIC ANALYSIS; GENETIC DATABASE; GENETIC VARIABILITY; HAEMOPHILUS INFLUENZAE; MOLECULAR EVOLUTION; MYCOBACTERIUM LEPRAE; NONHUMAN; PRIORITY JOURNAL; PROKARYOTE; PSEUDOGENE; SHORT SURVEY; SPECIES RICHNESS;

EID: 22144446758     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.28006-0     Document Type: Short Survey
Times cited : (19)

References (32)
  • 1
    • 0035161543 scopus 로고    scopus 로고
    • Genomes OnLine Database (GOLD): A monitor of genome projects world-wide
    • Bernal, A., Ear, U. & Kyrpides, N. (2001). Genomes OnLine Database (GOLD): a monitor of genome projects world-wide. Nucleic Acids Res 29, 126-127.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 126-127
    • Bernal, A.1    Ear, U.2    Kyrpides, N.3
  • 2
    • 0035931926 scopus 로고    scopus 로고
    • Massive gene decay in the leprosy bacillus
    • 41 other authors
    • Cole, S. T., Eiglmeier, K., Parkhill, J. & 41 other authors (2001). Massive gene decay in the leprosy bacillus. Nature 409, 1007-1011.
    • (2001) Nature , vol.409 , pp. 1007-1011
    • Cole, S.T.1    Eiglmeier, K.2    Parkhill, J.3
  • 3
    • 3543051830 scopus 로고    scopus 로고
    • Mauve: Multiple alignment of conserved genomic sequence with rearrangements
    • Darling, A. C., Mau, B., Blattner, F. R. & Perna, N. T. (2004). Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Res 14, 1394-1403.
    • (2004) Genome Res. , vol.14 , pp. 1394-1403
    • Darling, A.C.1    Mau, B.2    Blattner, F.R.3    Perna, N.T.4
  • 4
    • 2942679276 scopus 로고    scopus 로고
    • Small change: Keeping pace with microevolution
    • Feil, E. J. (2004). Small change: keeping pace with microevolution. Nat Rev Microbiol 2, 483-495.
    • (2004) Nat. Rev. Microbiol. , vol.2 , pp. 483-495
    • Feil, E.J.1
  • 5
    • 17644373764 scopus 로고    scopus 로고
    • Cataloguing our current genome collection
    • Field, D. & Hughes, J. (2005). Cataloguing our current genome collection. Microbiology 151, 1016-1019.
    • (2005) Microbiology , vol.151 , pp. 1016-1019
    • Field, D.1    Hughes, J.2
  • 7
    • 0028605344 scopus 로고
    • Clonal divergence in Escherichia coli as a result of recombination, not mutation
    • Guttman, D. S. & Dykhuizen, D. E. (1994). Clonal divergence in Escherichia coli as a result of recombination, not mutation. Science 266, 1380-1383.
    • (1994) Science , vol.266 , pp. 1380-1383
    • Guttman, D.S.1    Dykhuizen, D.E.2
  • 8
    • 13844266109 scopus 로고    scopus 로고
    • Genome properties: A system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics
    • Haft, D. H., Selengut, J. D., Brinkac, L. M., Zafar, N. & White, O. (2005). Genome properties: a system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics. Bioinformatics 21, 293-306.
    • (2005) Bioinformatics , vol.21 , pp. 293-306
    • Haft, D.H.1    Selengut, J.D.2    Brinkac, L.M.3    Zafar, N.4    White, O.5
  • 9
    • 11044225797 scopus 로고    scopus 로고
    • CBS genome atlas database: A dynamic storage for bioinformatic results and sequence data
    • Hallin, P. F. & Ussery, D. W. (2004). CBS genome atlas database: a dynamic storage for bioinformatic results and sequence data. Bioinformatics 20, 3682-3686.
    • (2004) Bioinformatics , vol.20 , pp. 3682-3686
    • Hallin, P.F.1    Ussery, D.W.2
  • 10
    • 0038634988 scopus 로고    scopus 로고
    • MuGeN: Simultaneous exploration of multiple genomes and computer analysis results
    • Hoebeke, M., Nicolas, P. & Bessieres, P. (2003). MuGeN: simultaneous exploration of multiple genomes and computer analysis results. Bioinformatics 19, 859-864.
    • (2003) Bioinformatics , vol.19 , pp. 859-864
    • Hoebeke, M.1    Nicolas, P.2    Bessieres, P.3
  • 11
    • 0242470267 scopus 로고    scopus 로고
    • Efficient multiple genome alignment
    • Hohl, M., Kurtz, S. & Ohlebusch, E. (2002). Efficient multiple genome alignment. Bioinformatics 18 Suppl 1, S312-S320.
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL. 1
    • Hohl, M.1    Kurtz, S.2    Ohlebusch, E.3
  • 12
    • 0033021298 scopus 로고    scopus 로고
    • Phylogenetic evidence for recombination in dengue virus
    • Holmes, E. C., Worobey, M. & Rambaut, A. (1999). Phylogenetic evidence for recombination in dengue virus. Mol Biol Evol 16, 405-409.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 405-409
    • Holmes, E.C.1    Worobey, M.2    Rambaut, A.3
  • 14
    • 0345304399 scopus 로고    scopus 로고
    • The power and promise of population genomics: From genotyping to genome typing
    • Luikart, G., England, P. R., Tallmon, D., Jordan, S. & Taberlet, P. (2003). The power and promise of population genomics: from genotyping to genome typing. Nat Rev Genet 4, 981-994.
    • (2003) Nat. Rev. Genet. , vol.4 , pp. 981-994
    • Luikart, G.1    England, P.R.2    Tallmon, D.3    Jordan, S.4    Taberlet, P.5
  • 15
    • 13144252236 scopus 로고    scopus 로고
    • Multilocus sequence typing: A portable approach to the identification of clones within populations of pathogenic microorganisms
    • 10 other authors
    • Maiden, M. C., Bygraves, J. A., Feil, E. & 10 other authors (1998). Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. Proc Natl Acad Sci U S A 95, 3140-3145.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 3140-3145
    • Maiden, M.C.1    Bygraves, J.A.2    Feil, E.3
  • 16
    • 0035011227 scopus 로고    scopus 로고
    • Comparison of genomic DNA sequences: Solved and unsolved problems
    • Miller, W. (2001). Comparison of genomic DNA sequences: solved and unsolved problems. Bioinformatics 17, 391-397.
    • (2001) Bioinformatics , vol.17 , pp. 391-397
    • Miller, W.1
  • 17
    • 10244255212 scopus 로고    scopus 로고
    • Taverna: A tool for the composition and enactment of bioinformatics workflows
    • 8 other authors
    • Oinn, T., Addis, M., Ferris, J. & 8 other authors (2004). Taverna: a tool for the composition and enactment of bioinformatics workflows. Bioinformatics 20, 3045-3054.
    • (2004) Bioinformatics , vol.20 , pp. 3045-3054
    • Oinn, T.1    Addis, M.2    Ferris, J.3
  • 19
    • 0346494926 scopus 로고    scopus 로고
    • TransportDB: A relational database of cellular membrane transport systems
    • (database issue)
    • Ren, Q., Kang, K. H. & Paulsen, I. T. (2004). TransportDB: a relational database of cellular membrane transport systems. Nucleic Acids Res 32 (database issue), D284-D288.
    • (2004) Nucleic Acids Res. , vol.32
    • Ren, Q.1    Kang, K.H.2    Paulsen, I.T.3
  • 21
    • 1142286469 scopus 로고    scopus 로고
    • Evolution of Staphylococcus aureus by large chromosomal replacements
    • Robinson, D. A. & Enright, M. C. (2004). Evolution of Staphylococcus aureus by large chromosomal replacements. J Bacteriol 186, 1060-1064.
    • (2004) J. Bacteriol. , vol.186 , pp. 1060-1064
    • Robinson, D.A.1    Enright, M.C.2
  • 22
    • 0346494928 scopus 로고    scopus 로고
    • The ORFanage: An ORFan database
    • (database issue)
    • Siew, N., Azaria, Y. & Fischer, D. (2004). The ORFanage: an ORFan database. Nucleic Acids Res 32 (database issue), D281-D283.
    • (2004) Nucleic Acids Res. , vol.32
    • Siew, N.1    Azaria, Y.2    Fischer, D.3
  • 23
  • 24
    • 0035211479 scopus 로고    scopus 로고
    • Exploring the demographic history of DNA sequences using the generalized skyline plot
    • Strimmer, K. & Pybus, O. G. (2001). Exploring the demographic history of DNA sequences using the generalized skyline plot. Mol Biol Evol 18, 2298-2305.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 2298-2305
    • Strimmer, K.1    Pybus, O.G.2
  • 25
    • 0346494857 scopus 로고    scopus 로고
    • FusionDB: A database for in-depth analysis of prokaryotic gene fusion events
    • (database issue)
    • Suhre, K. & Claverie, J. M. (2004). FusionDB: a database for in-depth analysis of prokaryotic gene fusion events. Nucleic Acids Res 32 (database issue), D273-D276.
    • (2004) Nucleic Acids Res. , vol.32
    • Suhre, K.1    Claverie, J.M.2
  • 26
    • 0042902833 scopus 로고    scopus 로고
    • The COG database: An updated version includes eukaryotes
    • 14 other authors
    • Tatusov, R. L., Fedorova, N. D., Jackson, J. D. & 14 other authors (2003). The COG database: an updated version includes eukaryotes. BMC Bioinformatics 4, 41.
    • (2003) BMC Bioinformatics , vol.4 , pp. 41
    • Tatusov, R.L.1    Fedorova, N.D.2    Jackson, J.D.3
  • 28
    • 0037249403 scopus 로고    scopus 로고
    • MBGD: Microbial genome database for comparative analysis
    • Uchiyama, I. (2003). MBGD: microbial genome database for comparative analysis. Nucleic Acids Res 31, 58-62.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 58-62
    • Uchiyama, I.1
  • 29
    • 0037168538 scopus 로고    scopus 로고
    • Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli
    • 16 other authors
    • Welch, R. A., Burland, V., Plunkett, G., 3rd & 16 other authors (2002). Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli. Proc Natl Acad Sci U S A 99, 17020-17024.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 17020-17024
    • Welch, R.A.1    Burland, V.2    Plunkett III, G.3
  • 30
    • 13444293344 scopus 로고    scopus 로고
    • Database resources of the National Center for Biotechnology Information
    • 26 other authors (database issue)
    • Wheeler, D. L., Barrett, T., Benson, D. A. & 26 other authors (2005). Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 33 (database issue), D39-D45.
    • (2005) Nucleic Acids Res. , vol.33
    • Wheeler, D.L.1    Barrett, T.2    Benson, D.A.3
  • 32
    • 0033639150 scopus 로고    scopus 로고
    • Statistical methods for detecting molecular adaptation
    • Yang, Z. & Bielawski, J. P. (2000). Statistical methods for detecting molecular adaptation. Trends Ecol Evol 15, 496-503.
    • (2000) Trends Ecol. Evol. , vol.15 , pp. 496-503
    • Yang, Z.1    Bielawski, J.P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.