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Volumn 15, Issue 6, 1999, Pages 440-445

Fast evaluation of internal loops in RNA secondary structure prediction

Author keywords

[No Author keywords available]

Indexed keywords

RNA;

EID: 0032787871     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/15.6.440     Document Type: Article
Times cited : (128)

References (13)
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  • 3
    • 13044292822 scopus 로고    scopus 로고
    • When RNA ruled - Another lost world?
    • Hopkin, K. (1998) When RNA ruled - another lost world? HMS Beagle, The BioMedNet Magazine, 27. http://biomednet.com/ hmsbeagle/1998/27/resnews/meeting.htm.
    • (1998) HMS Beagle, The BioMedNet Magazine , pp. 27
    • Hopkin, K.1
  • 4
    • 0025264854 scopus 로고
    • The equilibrium partition function and base pair binding probabilities for RNA secondary structure
    • McCaskill, J.S. (1990) The equilibrium partition function and base pair binding probabilities for RNA secondary structure. Biopolymers, 29, 1105-1119.
    • (1990) Biopolymers , vol.29 , pp. 1105-1119
    • McCaskill, J.S.1
  • 5
    • 0019082587 scopus 로고
    • Fast algorithm for predicting the secondary structure of single-stranded RNA
    • Nussinov, R. and Jacobson, A.B. (1980) Fast algorithm for predicting the secondary structure of single-stranded RNA. Proc. Natl Acad. Sci. USA, 77, 6309-6313.
    • (1980) Proc. Natl Acad. Sci. USA , vol.77 , pp. 6309-6313
    • Nussinov, R.1    Jacobson, A.B.2
  • 6
    • 0021760007 scopus 로고
    • An energy model that predicts the correct folding of both the tRNA and the 5S RNA molecules
    • Papanicolaou, C., Gouy, M. and Ninio, J. (1984) An energy model that predicts the correct folding of both the tRNA and the 5S RNA molecules. Nucleic Acids Res., 12, 31-44.
    • (1984) Nucleic Acids Res. , vol.12 , pp. 31-44
    • Papanicolaou, C.1    Gouy, M.2    Ninio, J.3
  • 7
    • 0025900996 scopus 로고
    • Thermodynamic study of internal loops in oligoribonucleotides: Symmetric loops are more stable than asymmetric loops
    • Peritz, A.E., Kierzek, R., Sugimoto, N. and Turner, D.H. (1991) Thermodynamic study of internal loops in oligoribonucleotides: symmetric loops are more stable than asymmetric loops. Biochemistry, 30, 6428-6436.
    • (1991) Biochemistry , vol.30 , pp. 6428-6436
    • Peritz, A.E.1    Kierzek, R.2    Sugimoto, N.3    Turner, D.H.4
  • 8
    • 0015216137 scopus 로고
    • Estimation of secondary structure in ribonucleic acids
    • Tinoco, I., Uhlenbeck, O.C. and Levine, M.D. (1971) Estimation of secondary structure in ribonucleic acids. Nature, 230, 362-367.
    • (1971) Nature , vol.230 , pp. 362-367
    • Tinoco, I.1    Uhlenbeck, O.C.2    Levine, M.D.3
  • 11
    • 0006572674 scopus 로고
    • Rapid dynamic programming methods for RNA secondary structure
    • Waterman, M.S. and Smith, T.F. (1986) Rapid dynamic programming methods for RNA secondary structure. Adv. Appl. Math., 7, 455-464.
    • (1986) Adv. Appl. Math. , vol.7 , pp. 455-464
    • Waterman, M.S.1    Smith, T.F.2
  • 12
    • 0024477261 scopus 로고
    • On finding all suboptimal foldings of an RNA molecule
    • Zuker, M. (1989) On finding all suboptimal foldings of an RNA molecule. Science, 244, 48-52.
    • (1989) Science , vol.244 , pp. 48-52
    • Zuker, M.1
  • 13
    • 0019876473 scopus 로고
    • Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
    • Zuker, M. and Stiegler, P. (1981) Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucleic Acids Res., 9, 133-148.
    • (1981) Nucleic Acids Res. , vol.9 , pp. 133-148
    • Zuker, M.1    Stiegler, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.