Mining the malaria transcriptome

Trends in Parasitology

Volumn 21, Issue 8, 2005, Pages 350-352

  Llinás, Manuel ^a   Del Portillo, Hernando A ^b  

^a PRINCETON UNIVERSITY   (United States)

^b UNIVERSITY OF SÃO PAULO   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

RNA BINDING PROTEIN; TRANSCRIPTOME;

BAYES THEOREM; BIOINFORMATICS; CELL MATURATION; DNA MICROARRAY; DNA STRAND; ERYTHROCYTE; GAMETOCYTE; GENE EXPRESSION; GENE SEQUENCE; HUMAN; MALARIA; MATHEMATICAL ANALYSIS; MEROZOITE; NONHUMAN; NUCLEOTIDE SEQUENCE; PERIODICITY; PLASMODIUM FALCIPARUM; PROBABILITY; PROMOTER REGION; PROTEOMICS; RIBOSOME; SERIAL ANALYSIS OF GENE EXPRESSION; SHORT SURVEY; SPOROZOITE; TOXOPLASMA; TRANSCRIPTION REGULATION; TRYPANOSOMA;

ANIMALS; COMPUTATIONAL BIOLOGY; GENOMICS; HUMANS; MALARIA, FALCIPARUM; PLASMODIUM FALCIPARUM; PROTEOMICS;

PLASMODIUM FALCIPARUM;

EID: 22044444452     PISSN: 14714922     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.pt.2005.06.009     Document Type: Short Survey

References (20)

1. M.J. Gardner Genome sequence of the human malaria parasite Plasmodium falciparum Nature 419 2002 498 511
2. C. Ben Mamoun Co-ordinated programme of gene expression during asexual intraerythrocytic development of the human malaria parasite Plasmodium falciparum revealed by microarray analysis Mol. Microbiol. 39 2001 26 36
3. Z. Bozdech The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum PLoS Biol. 1 2003 E5
4. K.G. Le Roch Discovery of gene function by expression profiling of the malaria parasite life cycle Science 301 2003 1503 1508
5. K.G. Le Roch Global analysis of transcript and protein levels across the Plasmodium falciparum life cycle Genome Res. 14 2004 2308 2318
6. J.P. Daily In vivo transcriptome of Plasmodium falciparum reveals overexpression of transcripts that encode surface proteins J. Inf. Dis. 191 2005 1196 1203
7. N. Hall A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic and proteomic analyses Science 307 2005 82 86
8. L. Florens A proteomic view of the Plasmodium falciparum life cycle Nature 419 2002 520 526
9. S. Patankar Serial analysis of gene expression in Plasmodium falciparum reveals the global expression profile of erythrocytic stages and the presence of anti-sense transcripts in the malarial parasite Mol. Biol. Cell 12 2001 3114 3125
10. J. Carlton Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii Nature 419 2002 512 519
11. J. Carlton The Plasmodium vivax genome sequencing project Trends Parasitol. 19 2003 227 231
12. K.T. Militello Identification of regulatory elements in the Plasmodium falciparum genome Mol. Biochem. Parasitol. 134 2004 75 88
13. R.M. Coulson Comparative genomics of transcriptional control in the human malaria parasite Plasmodium falciparum Genome Res. 14 2004 1548 1554
14. M. Lanzer Plasmodium: control of gene expression in malaria Exp. Parasitol. 77 1993 121 128
15. T.D. Moloshok Application of Bayesian decomposition for analysing microarray data Bioinformatics 18 2002 566 575
16. J. Ihmels Defining transcription modules using large-scale gene expression data Bioinformatics 20 2004 1993 2003
17. J. Hasty Computational studies of gene regulatory networks: in numero molecular biology Nat. Rev. Genet. 2 2001 268 279
18. S.A. Kauffman Metabolic stability and epigenesist in randomly constructed genetic nets J. Theor. Biol. 22 1969 437 467
19. N.R. Lomb Least-squares frequency analysis of unequally spaced data Astrophys. Space Sci. 39 1976 447 462
20. H. Yu Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs Genome Res. 14 2004 1107 1118