Low-molecular-weight protein tyrosine phosphatases of Bacillus subtilis

Journal of Bacteriology

Volumn 187, Issue 14, 2005, Pages 4945-4956

  Musumeci, Lucia ^a   Bongiorni, Cristina ^b   Tautz, Lutz ^a   Edwards, Robert A ^a,c   Osterman, Andrei ^a   Perego, Marta ^b   Mustelin, Tomas ^a   Bottini, Nunzio ^a,d  

^a BURNHAM INSTITUTE   (United States)

^b SCRIPPS RESEARCH INSTITUTE   (United States)

^c SAN DIEGO STATE UNIVERSITY   (United States)

^d UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

4 NITROPHENYL PHOSPHATE; ALCOHOL; PHOSPHOTYROSINE; POLYSACCHARIDE; PROTEIN TYROSINE PHOSPHATASE; PROTEIN YFKJ; PROTEIN YWLE; UNCLASSIFIED DRUG;

ARTICLE; BACILLUS SUBTILIS; BACTERIAL GROWTH; BACTERIAL STRAIN; DEPHOSPHORYLATION; ENZYME KINETICS; ENZYME SPECIFICITY; ESCHERICHIA COLI; GENE DELETION; GENE OVEREXPRESSION; GENETIC TRANSCRIPTION; GRAM NEGATIVE BACTERIUM; GRAM POSITIVE BACTERIUM; MOLECULAR WEIGHT; NONHUMAN; PRIORITY JOURNAL; PROTEIN FAMILY; PROTEIN STRUCTURE; STRESS; TRANSCRIPTION REGULATION;

AMINO ACID SEQUENCE; BACILLUS SUBTILIS; BASE SEQUENCE; CATIONS, DIVALENT; COMPUTATIONAL BIOLOGY; CONSERVED SEQUENCE; DNA PRIMERS; ESCHERICHIA COLI; HUMANS; KINETICS; MOLECULAR SEQUENCE DATA; MOLECULAR WEIGHT; PROTEIN-TYROSINE-PHOSPHATASE; RESTRICTION MAPPING; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; TRANSFORMATION, BACTERIAL;

BACILLUS SUBTILIS; ESCHERICHIA COLI; NEGIBACTERIA; POSIBACTERIA;

EID: 21844476149     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.187.14.4945-4956.2005     Document Type: Article

References (59)

1. Alonso, A., J. Sasin, N. Bottini, I. Friedberg, I. Friedberg, A. Osterman, A. Godzik, T. Hunter, J. Dixon, and T. Mustelin. 2004. The set of genes encoding protein tyrosine phosphatase family members in the human genome. Cell 117:699-711.
2. Anagnostopoulos, C., and J. Spizizen. 1961. Requirements for transformation in Bacillus subtilis. J. Bacteriol. 81:741-746.
3. Bender, M. H., and J. Yother. 2001. CpsB is a modulator of capsule-associated tyrosine kinase activity in Streptococcus pneumoniae. J. Biol. Chem. 276:47966-47974.
4. Bennett, M. S., Z. Guan, M. Laurberg, and X. D. Su. 2001. Bacillus subtilis arsenate reductase is structurally and functionally similar to low molecular weight protein tyrosine phosphatases. Proc. Natl. Acad. Sci. USA 98:13577-13582.
5. Bugert, P., and K. Geider, 1997. Characterization of the amsI gene product as a low molecular weight acid phosphatase controlling exopolysaccharide synthesis of Erwinia amylovora. FEBS Lett. 400:252-256.
6. Callahan, C., D, Neri-Cortes, and M. P. Deutscher. 2000. Purification and characterization of the tRNA-processing enzyme RNase BN. J. Biol. Chem. 275:1030-1034.
7. Chow, K., D. Ng, R. Stokes, and P. Johnson, 1994. Protein tyrosine phosphorylation in Mycobacterium tuberculosis. FEMS Microbiol. Lett. 124:203-207.
8. Cirri, P., T. Fiaschi, P. Chiarugi, G. Camici, G. Manao, G. Raugei, and G. Ramponi. 1996. The molecular basis of the differing kinetic behavior of the two low molecular mass phosphotyrosine protein phosphatase isoforms. J. Biol. Chem. 271:2604-2607.
9. Dadssi, M., and A. J. Cozzone. 1990. Evidence of protein-tyrosine kinase activity in the bacterium Acinetobacter calcoaceticus. J. Biol. Chem. 265: 20996-20999.
10. DeVinney, I., I. Steele-Mortimer, and B. B. Finlay. 2000. Phosphatases and kinases delivered to the host cell by bacterial pathogens. Trends Microbiol. 8:29-33.
11. Dowds, B. C., and J. A. Hoch. 1991. Regulation of the oxidative stress response by the hpr gene in Bacillus subtilis. J. Gen. Microbiol. 137:1121-1125.
12. Ferrari, E., D. J. Henner, M. Perego, and J. A. Hoch. 1988. Transcription of Bacillus subtilis subtilisin and expression of subtilisin in sporulation mutants. J. Bacteriol. 170:289-295.
13. Foster, R., J. Thorner, and G. S. Martin. 1989. Nucleotidylation, not phosphorylation, is the major source of the phosphotyrosine detected in enteric bacteria. J. Bacteriol. 171:272-279.
14. B factor from Bacillus anthracis and its role in virulence. J. Bacteriol. 182:5036-5045.
15. Grangeasse, C., P. Doublet, C. Vincent, E. Vaganay, M. Riberty, B. Duclos, and A. J. Cozzone. 1998. Functional characterization of the low-molecular-mass phosphotyrosine-protein phosphatase of Acinetobacter johnsonii. J. Mol. Biol. 278:339-347.
16. Guidi-Rontani, C. 2002. The alveolar macrophage: the Trojan horse of Bacillus anthracis. Trends Microbiol. 10:405-409.
17. Harwood, C. R., and S. M. Cutting (ed.). 1990. Molecular biological methods for Bacillus. John Wiley and Sons, New York, N.Y.
18. 5-glutamine methyltransferase that modifies peptide release factors. EMBO J. 21:769-778.
19. Himanen, J. P., and D. B. Nikolov. 2003. Eph receptors and ephrins. Int. J. Biochem. Cell. Biol. 35:130-134.
20. Howell, L. D., C. Griffiths, L. W. Slade, M. Potts, and P. J. Kennelly. 1996. Substrate specificity of IphP, a cyanobacterial dual-specificity protein phosphatase with MAP kinase phosphatase activity. Biochemistry 35:7566-7572.
21. Hunter, T. 1998. The role of tyrosine phosphorylation in cell growth and disease. Harvey Lect. 94:81-119.
22. Ilan, O., Y. Bloch, G. Frankel, H. Ullrich, K. Geider, and I. Rosenshine. 1999. Protein tyrosine kinases in bacterial pathogens are associated with virulence and production of exopolysaccharide. EMBO J. 18:3241-3248.
23. Kelly-Wintenberg, K., T. Anderson, and T. C. Montie. 1990. Phosphorylated tyrosine in the flagellum filament protein of Pseudomonas aeruginosa. J. Bacteriol. 172:5135-5139.
24. Kennelly, P. J. 2002. Protein kinases and protein phosphatases in prokaryotes: a genomic perspective. FEMS Microbiol. Lett. 206:1-8.
25. Kennelly, P. J. 2003. Archaeal protein kinases and protein phosphatases-insights from genomics and biochemistry. Biochem. J. 370:373-389.
26. Kholod, N., and T. Mustelin. 2001. Novel tools for studying protein complexes: vectors for co-expression of two proteins in Escherichia coli. BioTechniques 31:322-328.
27. Klein, G., C. Dartigalongue, and S. Raina. 2003. Phosphorylation-mediated regulation of heat shock response in Escherichia coli. Mol. Microbiol. 48: 269-285.
28. Kristich, C. J., G. D. Glekas, and G. W. Ordal. 2003. The conserved cytoplasmic module of the transmembrane chemoreceptor McpC mediates carbohydrate chemotaxis in Bacillus subtilis. Mol. Microbiol. 47:1353-1366.
29. Kunst, F., et al. 1997. The complete genome sequence of the Gram-positive bacterium Bacillus subtilis. Nature 390:249-256.
30. Mijakovic, I., L. Musumeci, L. Tautz, D. Petranovic, R. Edwards, P. R. Jensen, T. Mustelin, J. Deutscher, and N. Bottini. 2005. In vitro characterization of B. subtilis protein tyrosine phosphatase YwqE. J. Bacteriol. 187: 3384-3390.
31. Mijakovic, I., S. Poncet, A. Galinier, V. Monedero, S. Fieulaine, J. Janin, S. Nessler, J. A. Marquez, K. Scheffzek, S. Hasenbein, W. Hengstenberg, and J. Deutscher. 2002. Pyrophosphate-producing protein dephosphorylation by HPr kinase/phosphorylase: a relic of early life? Proc. Natl. Acad. Sci. USA 99:13442-13447.
32. Mijakovic, I., S. Poncet, G. Boel, A. Maze, S. Gillet, E. Jamet, P. Decottignies, C. Grangeasse, P. Doublet, P. Le Marechal, and J. Deutscher. 2003. Transmembrane modulator-dependent bacterial tyrosine kinase activates UDF-glucose dehydrogenases. EMBO J. 22:4709-4718.
33. Miller, J. H. 1972. Experiments in molecular genetics, p. 352-355. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
34. Morona, J. K., J. C. Paton, D. C. Miller, and R. Morona. 2000. Tyrosine phosphorylation of CpsD negatively regulates capsular polysaccharide biosynthesis in Streptococcus pneumoniae. Mol. Microbiol. 35:1431-1442.
35. Morona, J. K., R. Morona, D. C. Miller, and J. C. Paton. 2002. Streptococcus pneumoniae capsule biosynthesis protein CpsB is a novel manganese-dependent phosphotyrosine-protein phosphatase J. Bacteriol. 184:577-583.
36. Mustelin, T., G. S. Feng, N. Bottini, A. Alonso, N. Kholod, D. Birle, J. Merlo, and H. Huynh. 2002. Protein tyrosine phosphatases. Front. Biosci. 7:85-142.
37. Na, J. G., I. Pinto, and M. Hampsey. 1992. Isolation and characterization of SUA5, a novel gene required for normal growth in Saccharomyces cerevisiae. Genetics 131:791-801.
38. Osterman, A., and R. Overbeek. 2003. Missing genes in metabolic pathways: a comparative genomics approach. Curr. Opin. Chem. Biol. 7:1-14.
39. Ostrovsky, P. C., and S. Maloy. 1995. Protein phosphorylation on serine, threonine, and tyrosine residues modulates membrane-protein interactions and transcriptional regulation in Salmonella typhimurium. Genes Dev. 9:2034-2041.
40. Perego, M. 1993. Integrational vectors for genetic manipulation in Bacillus subtilis. p. 615-624. In A. L. Sonenshein, J. A. Hoch, and R. Losick (ed.), Bacillus subtilis and other gram-positive bacteria: biochemistry, physiology, and molecular genetics. American Society for Microbiology, Washington, D.C.
41. Potts, M., H. Sun, K. Mockaltis, P. J. Kennelly, D. Reed, and N. K. Tonks. 1993. A protein-tyrosine/serine phosphatase encoded by the genome of the cyanobacterium Nostoc commune UTEX 584. J. Biol. Chem. 268:7632-7635.
42. Preneta, R., S. Jarraud, C. Vincent, P. Doublet, B. Duclos, J. Etienne, and A. J. Cozzone. 2002. Isolation and characterization of a protein-tyrosine kinase and a phosphotyrosine-protein phosphatase from Klebsiella pneumoniae. Comp. Biochem. Physiol. B 131:103-112.
43. Price, C. W., P. Fawcett, H. Ceremonie, N. Su, C. K. Murphy, and P. Youngman. 2001. Genome-wide analysis of the general stress response in Bacillus subtilis. Mol. Microbiol. 41:757-774.
44. r phosphotyrosine protein phosphatases. Evidence of a long evolutionary history. Int. J. Biochem. Cell. Biol. 29:279-292.
45. Rayapureddi, J. P., C. Kattamuri, B. D. Steinmetz, B. J. Frankfort, E. J. Ostrin, G. Mardon, and R. S. Hegde. 2003. Eyes absent represents a class of protein tyrosine phosphatases. Nature 426:295-298.
46. Sau, S., N. Bhasin, E. R. Wann, J. C. Lee, T. J. Foster, and C. Y. Lee. 1997. The Staphylococcus aureus allelic genetic loci for serotype 5 and 8 capsule expression contain the type-specific genes flanked by common genes. Microbiology 143:2395-2405.
47. Smith, S. C, P. J. Kennelly, and M. Potts. 1997. Protein-tyrosine phosphorylation in the archaea. J. Bacteriol. 179:2418-2420.
48. Soulat, D., E. Vaganay, B. Duclos, A. L. Genestier, J. Etienne, and A. J. Cozzone. 2002. Staphylococcus aureus contains two low-molecular-mass phosphotyrosine protein phosphatases. J. Bacteriol. 184:5194-5199.
49. Tatusov, R. L., E. V. Koonin, and D. J. Lipman. 1997. A genomic perspective on protein families. Science 278:631-637.
50. Taylor, J. R. 1997. An introduction to error analysis. University Science Books, Sausalito, Calif.
51. Thomas, S. R., and T. J. Trust. 1995. Tyrosine phosphorylation of the tetragonal paracrystalline array of Aeromonas hydrophila: molecular cloning and high-level expression of the S-layer protein gene. J. Mol. Biol. 245:568-581.
52. Tzeng, Y. L., and J. A. Hoch. 1997. Molecular recognition in signal transduction: the interaction surfaces of the SpoOF response regulator with its cognate phosphorelay proteins revealed by alanine scanning mutagenesis J. Mol. Biol. 272:200-212.
53. Tzeng, Y. L., X. Z. Zhou, and J. A. Hoch. 1998. Phosphorylation of the Spo0B response regulator phosphotransferase initiating development in Bacillus subtilis. J. Biol. Chem. 273:23849-23855.
54. Vincent, C., P. Doublet, C. Grangeasse, E. Vaganay, A. J. Cozzone, and B. Duclos. 1999. Cells of Escherichia coli contain a protein-tyrosine kinase, Wzc, and a phosphotyrosine-protein phosphatase, Wzb. J. Bacteriol. 181:3472-3477.
55. Vincent, C., B. Duclos, C. Grangeasse, E. Vaganay, M. Riberty, A. J. Cozzone, and P. Doublet. 2000. Relationship between exopolysaccharide production and protein-tyrosine phosphorylation in Gram-negative bacteria. J. Mol. Biol. 304:311-321.
56. Völker, U., B. Maul, and M. Hecker. 1999. Expression of the sigmaB-dependent general stress regulon confers multiple stress resistance in Bacillus subtilis. J. Bacteriol. 181:3942-3948.
57. Wo, Y. Y., A. L. McCormack, J. Shabanowitz, D. F. Hunt, J. P. Davis, G. L. Mitchell, and R. L. Van Etten. 1992. Sequencing, cloning, and expression of human red cell-type acid phosphatase, a cytoplasmic phosphotyrosyl protein phosphatase. J. Biol. Chem. 267:10856-10865.
58. Zhang, M., C. V. Stauffacher, D. Lin, and R. L. Van Etten. 1998. Crystal structure of a human low molecular weight phosphotyrosyl phosphatase. Implications for substrate specificity. J. Biol. Chem. 273:21714-21720.
59. Zimmer, M. A., H. Szurmant, M. M. Saulmon, M. A. Collins, J. S. Bent, and G. W. Ordal. 2002. The role of heterologous receptor in McpB-mediated signaling in Bacillus subtilis chemotaxis. Mol. Microbiol. 45:555-568.