Novel multiple 5′-amino-modified primer for DNA microarrays

Genomics

Volumn 86, Issue 2, 2005, Pages 252-258

  Han, Jing ^a   Lee, Hin ^a   Nga, Yen Nguyen ^b   Beaucage, Serge L ^c   Puri, Raj K ^a  

^a Div Cell Gene Ther/Food/Drug A   (United States)

^b CENTER FOR BIOLOGICS EVALUATION AND RESEARCH   (United States)

^c Center for Drug Evaluation and Research   (United States)

Author keywords

Microarray; Novel multiple 5 amino modified primer; Signal intensity; Uni Link molecules

Indexed keywords

COMPLEMENTARY DNA; DNA; DYE; PRIMER DNA;

ARTICLE; DNA HYBRIDIZATION; DNA MICROARRAY; DNA PROBE; DNA STRUCTURE; DNA SYNTHESIS; GENE AMPLIFICATION; GENE INSERTION; NUCLEIC ACID ANALYSIS; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; REVERSE TRANSCRIPTION;

EID: 21444460943     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ygeno.2005.04.009     Document Type: Review

References (18)

1. P.O. Brown, and D. Botstein Exploring the new world of the genome with DNA microarrays Nat. Genet. 21 1999 33 37
2. D.J. Lockhart, and E.A. Winzeler Genomics, gene expression and DNA arrays Nature 405 2000 827 836
3. A. Richter, C. Schwager, S. Hentze, W. Ansorge, M.W. Hentze, and M. Muckenthaler Comparison of fluorescent tag DNA labeling methods used for expression analysis by DNA microarrays Biotechniques 33 2002 620 630
4. R.N. Van Gelder, M.E. von Zastrow, A. Yool, W.C. Dement, J.D. Barchas, and J.H. Eberwine Amplified RNA synthesized from limited quantities of heterogeneous cDNA Proc. Natl. Acad. Sci. USA 87 1990 1663 1667
5. E. Wang, L.D. Miller, G.A. Ohnmacht, E.T. Liu, and F.M. Marincola High-fidelity mRNA amplification for gene profiling Nat. Biotechnol. 18 2000 457 459
6. Z.J. Chen, H. Shen, and K.D. Tew Gene expression profiling using a novel method: amplified differential gene expression (ADGE) Nucleic Acids Res. 29 2001 (10e46)
7. J.N. Li, L. Adams, S.M. Schwartz, and R.E. Bumgarner RNA amplification, fidelity and reproducibility of expression profiling C. R. Biol. 326 2003 1021 1030
8. A.N. Spiess, N. Mueller, and R. Ivell Amplified RNA degradation in T7-amplification methods results in biased microarray hybridization BMC Genom. 4 2003 44 (available at http://www.biomedcentral.com/1471-2164/4/44 )
9. Y.W.C. Cao, R. Jin, and C.A. Mirkin Nanoparticles with Raman spectroscopic fingerprints for DNA and RNA detection Science 297 2002 1536 1540
10. R.L. Stears, R.C. Getts, and S.R. Gullans A novel sensitive detection system for high-density microarrays using dendrimer technology Physiol. Genom. 3 2000 93 99
11. C.C. Xiang, O.A. Kozhich, M. Chen, J.M. Inman, Q.N. Phan, Y. Chen, and M.J. Brownstein Amine-modified random primers to label probes for DNA microarrays Nat. Biotechnol. 20 2002 738 742
12. Uni-Link Aminomodifier User Manual. BD Biosciences, San Jose, CA; available at www.bdbiosciences.com.
13. Axon online application notes at www.axon.com/gn_GenePix_Support.cfm.
14. J.B. Randolph, and A.S. Waggoner Stability, specificity and fluorescence brightness of multiple-labeled fluorescent DNA probes Nucleic Acids Res. 25 1997 2923 2929
15. Online at http://nciarray.nci.nih.gov/reference/index.shtml.
16. V. Chizhikov, A. Rasooly, K. Chumakov, and D.D. Levy Microarray analysis of microbial virulence factors Appl. Environ. Microbiol. 67 2001 3258 3263
17. V. Chizhikov, M. Wagner, A. Ivshina, Y. Hoshino, A.Z. Kapikian, and K. Chumakov Detection and genotyping of human group rotaviruses by oligonucleotide microarray hybridization J. Clin. Microbiol. 40 2002 2398 2407
18. D. Volokhov, A. Pomerantsev, V. Kivovich, A. Rasooly, and V. Chizhikov Identification of Bacillus anthracis by multiprobe microarray hybridization Diagn. Microbiol. Infect. Dis. 49 2004 163 171