Gene expression profiling using a novel method: Amplified differential gene expression (ADGE)

Nucleic Acids Research

Volumn 29, Issue 10, 2020, Pages

  Chen, Zhijian J ^a   Shen, Hongxie ^a   Tew, Kenneth D ^a  

^a FOX CHASE CANCER CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEOTIDE; PRIMER DNA;

AMPLIFIED DIFFERENTIAL GENE EXPRESSION; ARTICLE; CONTROLLED STUDY; DNA HYBRIDIZATION; GENE EXPRESSION PROFILING; GENE IDENTIFICATION; GENE REPRESSION; HL-60/ADR CELL LINE; HUMAN; HUMAN CELL; MEASUREMENT ACCURACY; PRECIPITATION; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; CELL STRAIN HL 60; COMPARATIVE STUDY; DRUG RESISTANCE; GENE EXPRESSION REGULATION; GENETICS; MATHEMATICS; METHODOLOGY; NUCLEIC ACID HYBRIDIZATION; POLYMERASE CHAIN REACTION; REPRODUCIBILITY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY;

DNA PRIMERS; DRUG RESISTANCE, NEOPLASM; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, NEOPLASTIC; HL-60 CELLS; HUMANS; MATHEMATICS; NUCLEIC ACID HYBRIDIZATION; POLYMERASE CHAIN REACTION; REPRODUCIBILITY OF RESULTS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY;

MLCS; MLOWN;

EID: 0035874310     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/29.10.e46     Document Type: Article

References (13)

1. Shen, H., Schultz, M., Kruh, G.D. and Tew, K.D. (1998) Increased expression of DNA-dependent protein kinase confers resistance to adriamycin. Biochim. Biophys. Acta, 1381, 131-138.
2. Liang, P. and Pardee, A. (1992) Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. Science, 257, 967-970.
3. Matz, M., Usman, N., Shagin, D., Bogdanova, E. and Lukyanov, S. (1997) Ordered differential display: a simple method for systematic comparison of gene expression profiles. Nucleic Acids Res., 25, 2541-2542.
4. Kohroki, J., Tsuchiya, M., Fujita, S. and Nakanishi, T. (1999) A novel strategy for identifying differential gene expression: an improved method of differential display analysis. Biochem. Biophys. Res. Commun., 262, 365-367.
5. Wang, A., Pierce, A., Judson-Kremer, K., Gaddis, S., Aldaz, C.M., Johnson, D.G. and Mac Leod, M.C. (1999) Rapid analysis of gene expression (RAGE) facilitates universal expression profiling. Nucleic Acids Res., 27, 4609-4618.
6. Diatchenko, L., Lau, Y., Campbell, A., Chenchik, A., Moqadam, F., Huang, B., Lukyanov, S., Lukyanov, K., Gurskaya, N., Sverdlov, E. et al. (1996) Suppression subtractive hybridization: a method for generating differentially regulated or tissue-specific cDNA probes and libraries. Proc. Natl Acad. Sci. USA, 93, 6025-6030.
7. Lisitsyn, N., Lisitsyn, N. and Wigler, M. (1993) Cloning the differences between two complex genomes. Science, 259, 946-951.
8. Hubank, M. and Schatz, D. (1994) Identifying differences in mRNA expression by representional difference analysis of c DNA. Nucleic Acids Res., 22, 5640-5648.
9. Velculescu, E.V., Zhang, L., Zhou, W., Volgestein, J., Basrai, A.M., Bassett, E.D., Hieter, P., Vogelstein, B. and Kinzler, P. (1997) Characterization of the yeast transcription. Cell, 88, 243-251.
10. Zhang, L., Zhou, W., Velculescu, E.V., Kern, S.E., Hruban, R.H., Hamilton, S.R., Vogelstein, J. and Kinzler, J. (1997) Gene expression profiles in normal and cancer cells. Science, 276, 1268-1272.
11. Spinella, D.G., Bernardino, A.K., Redding, A.C., Koutz, P., Wei, Y., Pratt, E.K., Myers, K.K., Chappell, G., Gerken, S. and Mc Connell, S.J. (1999) Tandem arrayed ligation of expressed sequence tags (TALEST): a new method for generating global gene expression profiles. Nucleic Acids Res., 27, e22.
12. Khan, J., Sal, H.L., Bittner, L.M., Chen, Y., Trent, M.J. and Meltzer, S.P. (1999) Expression profiling in cancer using cDNA microarrays. Electrophoresis, 20, 223-229.
13. Coller, A.H., Grandori, C., Tamayo, P., Colbert, T., Lander, S.E. and Eisenman, N.R. (2000) Expression analysis with oligonucleotide microarrays reveals that MYC regulates genes involved in growth, cell cycle, signaling, and adhesion. Proc. Natl Acad. Sci. USA, 97, 3260-3265.