메뉴 건너뛰기




Volumn 21, Issue 13, 2005, Pages 2994-3000

Segmentation of cDNA microarray spots using Markov random field modeling

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA;

EID: 21444437854     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti455     Document Type: Article
Times cited : (45)

References (24)
  • 1
    • 17144441208 scopus 로고    scopus 로고
    • Microarray segmentation methods significantly influence data precision
    • Ahmed,A.A. et al. (2004) Microarray segmentation methods significantly influence data precision. Nucleic Acids Res., 32, e50.
    • (2004) Nucleic Acids Res. , vol.32
    • Ahmed, A.A.1
  • 2
    • 0036629509 scopus 로고    scopus 로고
    • Simulation of cDNA microarrays via a parameterized random signal model
    • Balagurunathan,Y. et al. (2002) Simulation of cDNA microarrays via a parameterized random signal model. J. Biomed. Opt., 7, 507-523.
    • (2002) J. Biomed. Opt. , vol.7 , pp. 507-523
    • Balagurunathan, Y.1
  • 3
    • 0000013152 scopus 로고
    • On the statistical analysis of dirty images
    • Besag,J. (1986) On the statistical analysis of dirty images. J. R. Stat. Soc. B, 48, 259-302.
    • (1986) J. R. Stat. Soc. B , vol.48 , pp. 259-302
    • Besag, J.1
  • 4
    • 0000913755 scopus 로고
    • Spatial interaction and the statistical analysis of lattice systems
    • Besag,J. (1974) Spatial interaction and the statistical analysis of lattice systems. J. R. Stats. Soc. B, 26, 192-236.
    • (1974) J. R. Stats. Soc. B , vol.26 , pp. 192-236
    • Besag, J.1
  • 5
    • 0003432145 scopus 로고    scopus 로고
    • Improved techniques for finding spots on cDNA microarrays
    • University of Washington, Seattle, WA, August 2000
    • Buhler,J., Ideker,T. and Haynor,D. (2000) Improved techniques for finding spots on cDNA microarrays. University of Washington, Seattle, WA, August 2000.
    • (2000)
    • Buhler, J.1    Ideker, T.2    Haynor, D.3
  • 6
    • 0031246430 scopus 로고    scopus 로고
    • Ratio-based decisions and the quantitative analysis of cDNA microarray images
    • Chen,Y. et al. (1997) Ratio-based decisions and the quantitative analysis of cDNA microarray images. J. Biomed. Opt., 4, 364-374.
    • (1997) J. Biomed. Opt. , vol.4 , pp. 364-374
    • Chen, Y.1
  • 8
    • 0021518209 scopus 로고
    • Stochastic relaxation, Gibbs distribution, and the Bayesian restoration of images
    • Geman,S. and Geman,D. (1984) Stochastic relaxation, Gibbs distribution, and the Bayesian restoration of images. IEEE Trans. Pattern Anal. Mach. Intell., 6, 721-741.
    • (1984) IEEE Trans. Pattern Anal. Mach. Intell. , vol.6 , pp. 721-741
    • Geman, S.1    Geman, D.2
  • 9
    • 0042686643 scopus 로고    scopus 로고
    • GenePix4000 Axon Instruments, Inc
    • GenePix4000 (1999) A User's Guide. Axon Instruments, Inc.
    • (1999) A User's Guide
  • 10
    • 0031283422 scopus 로고    scopus 로고
    • Markov random field segmentation of brain MR images
    • Held,K. et al. (1997) Markov random field segmentation of brain MR images. IEEE Trans. Med. Imaging, 16, 878-886.
    • (1997) IEEE Trans. Med. Imaging , vol.16 , pp. 878-886
    • Held, K.1
  • 11
    • 0043143893 scopus 로고    scopus 로고
    • An automatic block and spot indexing with k-nearest neighbors graph for microarray image analysis
    • Jung,H.Y. and Cho,H.G. (2002) An automatic block and spot indexing with k-nearest neighbors graph for microarray image analysis. Bioinformatics, 18, S141-S151.
    • (2002) Bioinformatics , vol.18
    • Jung, H.Y.1    Cho, H.G.2
  • 14
    • 4444284262 scopus 로고    scopus 로고
    • Expressed gene clusters associated with cellular sensitivity and resistance towards anti-viral and anti-proliferative actions of interferon
    • Khabar,K.S.A. et al. (2004) Expressed gene clusters associated with cellular sensitivity and resistance towards anti-viral and anti-proliferative actions of interferon. J. Mol. Biol., 342, 833-846.
    • (2004) J. Mol. Biol. , vol.342 , pp. 833-846
    • Khabar, K.S.A.1
  • 16
    • 0024521543 scopus 로고
    • A concordance correlation coefficient to evaluate reproducibility
    • Lin,L.I. (1989) A concordance correlation coefficient to evaluate reproducibility. Biometrics, 45, 255-268.
    • (1989) Biometrics , vol.45 , pp. 255-268
    • Lin, L.I.1
  • 17
    • 0043028151 scopus 로고    scopus 로고
    • Intensity-based segmentation of microarray images
    • Nagarajan,R. (2003) Intensity-based segmentation of microarray images. IEEE Trans. Med. Imaging, 22, 882-889.
    • (2003) IEEE Trans. Med. Imaging , vol.22 , pp. 882-889
    • Nagarajan, R.1
  • 18
    • 12244284624 scopus 로고    scopus 로고
    • DNA microarray experiments: Biological and technological aspects
    • Nguyen,D.V. (2002) DNA microarray experiments: biological and technological aspects. Biometrics, 58, 701-717.
    • (2002) Biometrics , vol.58 , pp. 701-717
    • Nguyen, D.V.1
  • 19
    • 0018306059 scopus 로고
    • A threshold selection method from gray-level histogram
    • Otsu,N. (1979) A threshold selection method from gray-level histogram. IEEE Trans. Syst. Man Cybern., 8, 62-66.
    • (1979) IEEE Trans. Syst. Man Cybern. , vol.8 , pp. 62-66
    • Otsu, N.1
  • 20
    • 0026842556 scopus 로고
    • An adaptive clustering algorithm for image segmentation
    • Pappas,T.N. (1992) An adaptive clustering algorithm for image segmentation. IEEE Trans. on Signal Processing, 40, 901-914.
    • (1992) IEEE Trans. on Signal Processing , vol.40 , pp. 901-914
    • Pappas, T.N.1
  • 21
    • 0003477556 scopus 로고
    • Sturart,A. and Ord,J.K. (eds), Charles Griffin & Company Limited, London
    • Sturart,A. and Ord,J.K. (1987) Kendall's Advanced Theory of Statistics. In Sturart,A. and Ord,J.K. (eds), Charles Griffin & Company Limited, London.
    • (1987) Kendall's Advanced Theory of Statistics
    • Sturart, A.1    Ord, J.K.2
  • 22
    • 0036004157 scopus 로고    scopus 로고
    • Comparison of methods for image analysis on cDNA microarray
    • Yang,Y.H. et al. (2002) Comparison of methods for image analysis on cDNA microarray. Journal of Computational and Graphical Statistics, 11, 108-136.
    • (2002) Journal of Computational and Graphical Statistics , vol.11 , pp. 108-136
    • Yang, Y.H.1
  • 23
    • 0035751799 scopus 로고    scopus 로고
    • Analysis of cDNA microarray images
    • Yang,Y.H. et al. (2001) Analysis of cDNA microarray images. Brief. Bioinformatics, 2, 341-349.
    • (2001) Brief. Bioinformatics , vol.2 , pp. 341-349
    • Yang, Y.H.1
  • 24
    • 0034745001 scopus 로고    scopus 로고
    • Segmentation of brain MR images through a hidden Markov random field model and the expectation-maximization algorithm
    • Zhang,Y. et al. (2001) Segmentation of brain MR images through a hidden Markov random field model and the expectation-maximization algorithm. IEEE Trans. Med. Imaging, 20, 45-57.
    • (2001) IEEE Trans. Med. Imaging , vol.20 , pp. 45-57
    • Zhang, Y.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.