-
1
-
-
0023408258
-
Structure of the reaction center from Rhodobacter spheroides R-26: The protein subunits
-
Allen, J. P., T. O. Yeates, H. Komiya, and D. C. Rees. 1987. Structure of the reaction center from Rhodobacter spheroides R-26: the protein subunits. Proc. Natl. Acad. Sci. USA. 84:6162-6166.
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 6162-6166
-
-
Allen, J.P.1
Yeates, T.O.2
Komiya, H.3
Rees, D.C.4
-
2
-
-
0037295369
-
Photosystem II: The engine of life
-
Barber, J. 2003. Photosystem II: the engine of life. Quart. Rev. Biophys. 36:71-89.
-
(2003)
Quart. Rev. Biophys.
, vol.36
, pp. 71-89
-
-
Barber, J.1
-
3
-
-
84890021933
-
The calculation of small molecular interactions by the differences of separate total energies. Some procedures with reduced errors
-
Boys, S., and F. Bernardi. 1970. The calculation of small molecular interactions by the differences of separate total energies. Some procedures with reduced errors. Mol. Phys. 19:553-566.
-
(1970)
Mol. Phys.
, vol.19
, pp. 553-566
-
-
Boys, S.1
Bernardi, F.2
-
4
-
-
0041684239
-
Theoretical studies of van der Waals molecules and intermolecular forces
-
Buckingham, A. D., P. W. Fowler, and J. M. Hutson. 1988. Theoretical studies of van der Waals molecules and intermolecular forces. Chem. Rev. 88:963-988.
-
(1988)
Chem. Rev.
, vol.88
, pp. 963-988
-
-
Buckingham, A.D.1
Fowler, P.W.2
Hutson, J.M.3
-
5
-
-
24444467700
-
Weak interactions between small systems - Models for studying the nature of intermolecular forces and challenging problems for ab initio calculations
-
Chalasinski, G., and M. Gutowski. 1988. Weak interactions between small systems - models for studying the nature of intermolecular forces and challenging problems for ab initio calculations. Chem. Rev. 88:943-962.
-
(1988)
Chem. Rev.
, vol.88
, pp. 943-962
-
-
Chalasinski, G.1
Gutowski, M.2
-
6
-
-
0038078830
-
State of the art and challenges of the ab initio theory of intermolecular interactions
-
Chalasinski, G., and M. M. Szczesniak. 2000. State of the art and challenges of the ab initio theory of intermolecular interactions. Chem. Rev. 100:4227-4252.
-
(2000)
Chem. Rev.
, vol.100
, pp. 4227-4252
-
-
Chalasinski, G.1
Szczesniak, M.M.2
-
8
-
-
0023483526
-
How carotenoids function in photosynthetic bacteria
-
Cogdell, R., and H. Frank. 1987. How carotenoids function in photosynthetic bacteria. Biochim. Biophys. Acta. 895:63-79.
-
(1987)
Biochim. Biophys. Acta
, vol.895
, pp. 63-79
-
-
Cogdell, R.1
Frank, H.2
-
9
-
-
0038237089
-
β-carotene to chlorophyll singlet energy transfer in the Photosystem I core of Synechococcus elongatus proceeds via the β-carotene S-2 and S-1 states
-
de Weerd, F. L., J. T. M. Kennis, J. P. Dekker, and R. van Grondelle. 2003. β-carotene to chlorophyll singlet energy transfer in the Photosystem I core of Synechococcus elongatus proceeds via the β-carotene S-2 and S-1 states. J. Phys. Chem. B. 107:5995-6002.
-
(2003)
J. Phys. Chem. B
, vol.107
, pp. 5995-6002
-
-
De Weerd, F.L.1
Kennis, J.T.M.2
Dekker, J.P.3
Van Grondelle, R.4
-
10
-
-
0022348605
-
Structure of the protein subunits in the photosynthetic reaction center of Rhodopseudomonas viridis at 3 Å resolution
-
Deisenhofer, J., O. Epp, K. Miki, R. Huber, and H. Michel. 1985. Structure of the protein subunits in the photosynthetic reaction center of Rhodopseudomonas viridis at 3 Å resolution. Nature. 318:618-624.
-
(1985)
Nature
, vol.318
, pp. 618-624
-
-
Deisenhofer, J.1
Epp, O.2
Miki, K.3
Huber, R.4
Michel, H.5
-
11
-
-
0003158113
-
The quest for reliability in calculated properties of hydrogen-bonded complexes
-
S. Scheiner, editor. Wiley, Chichester, UK
-
Del Bene, J., and I. Shavitt. 1997. The quest for reliability in calculated properties of hydrogen-bonded complexes. In Molecular Interactions. S. Scheiner, editor. Wiley, Chichester, UK.
-
(1997)
Molecular Interactions
-
-
Del Bene, J.1
Shavitt, I.2
-
12
-
-
34250689173
-
Über das Verhältnis der van der Waalsschen Kräfte zu den Homöopolaren Bindungskräften
-
Eisenschitz, R., and F. London. 1930. Über das Verhältnis der van der Waalsschen Kräfte zu den Homöopolaren Bindungskräften. Z. Phy. 60:491-527.
-
(1930)
Z. Phy.
, vol.60
, pp. 491-527
-
-
Eisenschitz, R.1
London, F.2
-
13
-
-
0035932162
-
Hydrogen bonding and stacking interactions of nucleic acid base pairs: A density functional theory-based treatment
-
Elstner, M., P. Hobza, T. Frauenheim, S. Suhai, and E. Kaxiras. 2001. Hydrogen bonding and stacking interactions of nucleic acid base pairs: a density functional theory-based treatment. J. Chem. Phys. 114:5149-5155.
-
(2001)
J. Chem. Phys.
, vol.114
, pp. 5149-5155
-
-
Elstner, M.1
Hobza, P.2
Frauenheim, T.3
Suhai, S.4
Kaxiras, E.5
-
14
-
-
0028774335
-
Structure of the photosynthetic reaction center from Rhodobacter sphaeroides at 2.65 Å resolution: Cofactors and protein-cofactor interactions
-
Ermler, U., G. Fritzsch, S. K. Buchanan, and H. Michel. 1994. Structure of the photosynthetic reaction center from Rhodobacter sphaeroides at 2.65 Å resolution: cofactors and protein-cofactor interactions. Structure. 2:925-936.
-
(1994)
Structure
, vol.2
, pp. 925-936
-
-
Ermler, U.1
Fritzsch, G.2
Buchanan, S.K.3
Michel, H.4
-
15
-
-
0035731519
-
Carotenoids and bacterial photosynthesis: The story so far
-
Fraser, N. J., H. Hashimoto, and C. Richard. 2001. Carotenoids and bacterial photosynthesis: the story so far. Photosynth. Res. 70:249-256.
-
(2001)
Photosynth. Res.
, vol.70
, pp. 249-256
-
-
Fraser, N.J.1
Hashimoto, H.2
Richard, C.3
-
16
-
-
84891154517
-
-
Gaussian Inc., Pittsburgh, PA
-
Frisch, M. J., G. W. Trucks, H. B. Schlegel, G. E. Scuseria, M. A. Robb, J. R. Cheeseman, V. G. Zakrzewski, J. A. Montgomery, R. E. Stratmann, J. C. Burant, S. Dapprich, J. M. Millam, A. D. Daniels, K. N. Kudin, M. C. Strain, O. Farkas, L. Tomasi, V. Barone, M. Cossi, R. Cammi, B. Mennucci, C. Pomelli, C. Adamo, S. Clifford, J. Ochterski, G. A. Petersson, P. Y. Ayala, Q. Cui, K. Morokuma, D. K. Malick, A. D. Rabuck, K. Raghavachari, J. B. Foresman, J. Cioslowski, J. V. Ortiz, A. G. Baboul, B. B. Stefanov, G. Liu, A. Liashenko, P. Piskorz, L. Komaromi, R. Gomperts, R. L. Martin, D. J. Fox, T. Keith, M. A. Al-Laham, C. Y. Peng, A. Nanayakkara, C. Gonzalez, M. Challacombe, P. M. W. Gill, B. G. Johnson, W. Chen, M. W. Wong, J. L. Andres, M. Head-Gordon, E. S. Replogle, and J. A. Pople. 1998. GAUSSIAN 98, Rev. A.9. Gaussian Inc., Pittsburgh, PA.
-
(1998)
GAUSSIAN 98, Rev. A.9
-
-
Frisch, M.J.1
Trucks, G.W.2
Schlegel, H.B.3
Scuseria, G.E.4
Robb, M.A.5
Cheeseman, J.R.6
Zakrzewski, V.G.7
Montgomery, J.A.8
Stratmann, R.E.9
Burant, J.C.10
Dapprich, S.11
Millam, J.M.12
Daniels, A.D.13
Kudin, K.N.14
Strain, M.C.15
Farkas, O.16
Tomasi, L.17
Barone, V.18
Cossi, M.19
Cammi, R.20
Mennucci, B.21
Pomelli, C.22
Adamo, C.23
Clifford, S.24
Ochterski, J.25
Petersson, G.A.26
Ayala, P.Y.27
Cui, Q.28
Morokuma, K.29
Malick, D.K.30
Rabuck, A.D.31
Raghavachari, K.32
Foresman, J.B.33
Cioslowski, J.34
Ortiz, J.V.35
Baboul, A.G.36
Stefanov, B.B.37
Liu, G.38
Liashenko, A.39
Piskorz, P.40
Komaromi, L.41
Gomperts, R.42
Martin, R.L.43
Fox, D.J.44
Keith, T.45
Al-Laham, M.A.46
Peng, C.Y.47
Nanayakkara, A.48
Gonzalez, C.49
Challacombe, M.50
Gill, P.M.W.51
Johnson, B.G.52
Chen, W.53
Wong, M.W.54
Andres, J.L.55
Head-Gordon, M.56
Replogle, E.S.57
Pople, J.A.58
more..
-
17
-
-
0000018432
-
Energy transfer from carotenoid to bacteriochlorophyll a in the B800-820 antenna complexes from Rhodopseudomonas acidophila strain 7050
-
Gillbro, T., R. J. Cogdell, and V. Sundström. 1988. Energy transfer from carotenoid to bacteriochlorophyll a in the B800-820 antenna complexes from Rhodopseudomonas acidophila strain 7050. FEBS Lett. 235:169-172.
-
(1988)
FEBS Lett.
, vol.235
, pp. 169-172
-
-
Gillbro, T.1
Cogdell, R.J.2
Sundström, V.3
-
19
-
-
0000229573
-
MP2 and CCSD(T) calculations on H-bonded and stacked formamide⋯ formamide and formamidine⋯formamidine dimers
-
Hobza, P., and J. Sponer. 1996. MP2 and CCSD(T) calculations on H-bonded and stacked formamide⋯formamide and formamidine⋯formamidine dimers. Theochem. J. Mol. Struct. 388:115-120.
-
(1996)
Theochem. J. Mol. Struct.
, vol.388
, pp. 115-120
-
-
Hobza, P.1
Sponer, J.2
-
20
-
-
0037010001
-
Toward true DNA base-stacking energies: MP2, CCSD(T), and complete basis set calculations
-
Hobza, P., and J. Sponer. 2002. Toward true DNA base-stacking energies: MP2, CCSD(T), and complete basis set calculations. J. Am. Chem. Soc. 124:11802-11808.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 11802-11808
-
-
Hobza, P.1
Sponer, J.2
-
21
-
-
0041684229
-
Intermolecular interactions between medium-sized systems - Nonempirical and empirical calculations of interaction energies - Successes and failures
-
Hobza, P., and R. Zahradnik. 1988. Intermolecular interactions between medium-sized systems - nonempirical and empirical calculations of interaction energies - successes and failures. Chem. Rev. 88:871-897.
-
(1988)
Chem. Rev.
, vol.88
, pp. 871-897
-
-
Hobza, P.1
Zahradnik, R.2
-
22
-
-
0000628471
-
Potential-energy surface of the benzene dimer - Ab initio theoretical study
-
Hobza, P., H. L. Selzle, and E. W. Schlag. 1994. Potential-energy surface of the benzene dimer - ab initio theoretical study. J. Am. Chem. Soc. 116:3500-3506.
-
(1994)
J. Am. Chem. Soc.
, vol.116
, pp. 3500-3506
-
-
Hobza, P.1
Selzle, H.L.2
Schlag, E.W.3
-
23
-
-
0029167904
-
H-bonded and stacked DNA basepairs: Cytosine dimer. An ab initio second order Moller-Plesset study
-
Hobza, P., J. Sponer, and M. Polasek. 1995. H-bonded and stacked DNA basepairs: cytosine dimer. An ab initio second order Moller-Plesset study. J. Am. Chem. Soc. 117:792-798.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 792-798
-
-
Hobza, P.1
Sponer, J.2
Polasek, M.3
-
24
-
-
0037721149
-
Potential energy surface for the benzene dimer. Results of ab initio CCSD(T) calculations show two nearly isoenergetic structures: T-shaped and parallel-displaced
-
Hobza, P., H. L. Selzle, and E. W. Schlag. 1996. Potential energy surface for the benzene dimer. Results of ab initio CCSD(T) calculations show two nearly isoenergetic structures: T-shaped and parallel-displaced. J. Phys. Chem. 100:18790-18794.
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 18790-18794
-
-
Hobza, P.1
Selzle, H.L.2
Schlag, E.W.3
-
25
-
-
0001371099
-
Electron-correlated calculations of electric properties of nucleic acid bases - Comment
-
Hobza, P., J. Sponer, and J. Leszczynski. 1997. Electron-correlated calculations of electric properties of nucleic acid bases - comment. J. Phys. Chem. B. 101:8038-8039.
-
(1997)
J. Phys. Chem. B
, vol.101
, pp. 8038-8039
-
-
Hobza, P.1
Sponer, J.2
Leszczynski, J.3
-
26
-
-
0030055628
-
Structural basis of light harvesting by carotenoids: Peridinin-chlorophyll-protein from Amphidinium carterae
-
Hofmann, E., P. Wrench, F. Sharples, R. Hiller, W. Welte, and K. Diederichs. 1996. Structural basis of light harvesting by carotenoids: peridinin-chlorophyll-protein from Amphidinium carterae. Science. 272:1788-1791.
-
(1996)
Science
, vol.272
, pp. 1788-1791
-
-
Hofmann, E.1
Wrench, P.2
Sharples, F.3
Hiller, R.4
Welte, W.5
Diederichs, K.6
-
27
-
-
0035131725
-
Excitation energies from time-dependent density functional theory for linear polyene oligomers: Butadiene to decapentaene
-
Hsu, C. P., S. Hirata, and M. Head-Gordon. 2001. Excitation energies from time-dependent density functional theory for linear polyene oligomers: butadiene to decapentaene. J. Phys. Chem. A. 105:451-458.
-
(2001)
J. Phys. Chem. A
, vol.105
, pp. 451-458
-
-
Hsu, C.P.1
Hirata, S.2
Head-Gordon, M.3
-
28
-
-
0036117841
-
Photosynthetic apparatus of purple bacteria
-
Hu, X., T. Ritz, A. Damjanovic, F. Autenrieth, and K. Schulten. 2002. Photosynthetic apparatus of purple bacteria. Quart. Rev. Biophys. 35:1-62.
-
(2002)
Quart. Rev. Biophys.
, vol.35
, pp. 1-62
-
-
Hu, X.1
Ritz, T.2
Damjanovic, A.3
Autenrieth, F.4
Schulten, K.5
-
29
-
-
0342589408
-
Pigment organization and transfer of electronic excitation in the purple bacteria
-
Hu, X., T. Ritz, A. Damjanović, and K. Schulten. 1997. Pigment organization and transfer of electronic excitation in the purple bacteria. J. Phys. Chem. B. 101:3854-3871.
-
(1997)
J. Phys. Chem. B
, vol.101
, pp. 3854-3871
-
-
Hu, X.1
Ritz, T.2
Damjanović, A.3
Schulten, K.4
-
31
-
-
0024289471
-
Nomenclature of tetrapyrroles, recommendations
-
IUPAC-IUB Joint Commission on Biochemical Nomenclature (JCBN). 1986. Nomenclature of tetrapyrroles, recommendations. Eur. J. Biochem. 178:277-328.
-
(1986)
Eur. J. Biochem.
, vol.178
, pp. 277-328
-
-
-
32
-
-
0038774655
-
A quantum chemistry study of benzene dimer
-
Jaffe, R. L., and G. D. Smith. 1996. A quantum chemistry study of benzene dimer. J. Chem. Phys. 105:2780-2788.
-
(1996)
J. Chem. Phys.
, vol.105
, pp. 2780-2788
-
-
Jaffe, R.L.1
Smith, G.D.2
-
33
-
-
0035927420
-
Three-dimensional structure of cyanobacterial Photosystem I at 2.5 Ångstrom resolution
-
Jordan, P., P. Fromme, H. T. Witt, O 0. Klukas, W. Saenger, and N. Krauss. 2001. Three-dimensional structure of cyanobacterial Photosystem I at 2. 5 Ångstrom resolution. Nature. 411:909-917.
-
(2001)
Nature
, vol.411
, pp. 909-917
-
-
Jordan, P.1
Fromme, P.2
Witt, H.T.3
Klukas, O.4
Saenger, W.5
Krauss, N.6
-
35
-
-
0033599147
-
The dimer of acetylene and the dimer of diacetylene: A floppy and a very floppy molecule
-
Karpfen, A. 1999. The dimer of acetylene and the dimer of diacetylene: a floppy and a very floppy molecule. J. Phys. Chem. A. 103:11431-11441.
-
(1999)
J. Phys. Chem. A
, vol.103
, pp. 11431-11441
-
-
Karpfen, A.1
-
36
-
-
0034317690
-
Molecular clusters of π-systems: Theoretical studies of structures, spectra, and origin of interaction energies
-
Kim, K. S., P. Tarakeshwar, and J. Y. Lee. 2000. Molecular clusters of π-systems: theoretical studies of structures, spectra, and origin of interaction energies. Chem. Rev. 100:4145-4185.
-
(2000)
Chem. Rev.
, vol.100
, pp. 4145-4185
-
-
Kim, K.S.1
Tarakeshwar, P.2
Lee, J.Y.3
-
37
-
-
0030585121
-
The crystal structure of the light-harvesting complex II (B800-850) from Rhodospirillum molischianum
-
Koepke, J., X. Hu, C. Münke, K. Schulten, and H. Michel. 1996. The crystal structure of the light-harvesting complex II (B800-850) from Rhodospirillum molischianum. Structure. 4:581-597.
-
(1996)
Structure
, vol.4
, pp. 581-597
-
-
Koepke, J.1
Hu, X.2
Münke, C.3
Schulten, K.4
Michel, H.5
-
38
-
-
0034639974
-
Global minimum of the adenine⋯thymine base pair corresponds neither to Watson-Crick nor to Hoogsteen structures. Molecular dynamic/quenching/AMBER and ab initio beyond Hartree-Fock studies
-
Kratochvil, M., J. Sponer, and P. Hobza. 2000. Global minimum of the adenine⋯thymine base pair corresponds neither to Watson-Crick nor to Hoogsteen structures. Molecular dynamic/quenching/AMBER and ab initio beyond Hartree-Fock studies. J. Am. Chem. Soc. 122:3495-3499.
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 3495-3499
-
-
Kratochvil, M.1
Sponer, J.2
Hobza, P.3
-
39
-
-
0028144301
-
The relationship between carotenoid biosynthesis and the assembly of the light-harvesting LH2 complex in Rhodobacter sphaeroides
-
Lang, H. P., and C. N. Hunter. 1994. The relationship between carotenoid biosynthesis and the assembly of the light-harvesting LH2 complex in Rhodobacter sphaeroides. Biochem. J. 298:197-205.
-
(1994)
Biochem. J.
, vol.298
, pp. 197-205
-
-
Lang, H.P.1
Hunter, C.N.2
-
40
-
-
0037085009
-
Xanthophyll biosynthetic mutants of Arabidopsis thaliana: Altered nonphotochemical quenching of chlorophyll fluorescence is due to changes in Photosystem II antenna size and stability
-
Lokstein, H., L. Tian, J. E. W. Polle, and D. DellaPenna. 2002. Xanthophyll biosynthetic mutants of Arabidopsis thaliana: altered nonphotochemical quenching of chlorophyll fluorescence is due to changes in Photosystem II antenna size and stability. Biochim. Biophys. Acta Bioenerg. 1553:309-319.
-
(2002)
Biochim. Biophys. Acta Bioenerg.
, vol.1553
, pp. 309-319
-
-
Lokstein, H.1
Tian, L.2
Polle, J.E.W.3
DellaPenna, D.4
-
41
-
-
0034716941
-
The final stages of folding of the membrane protein bacteriorhodopsin occur by kinetically indistinguishable parallel folding paths that are mediated by pH
-
Lu, H., and P. J. Booth. 2000. The final stages of folding of the membrane protein bacteriorhodopsin occur by kinetically indistinguishable parallel folding paths that are mediated by pH. J. Mol. Biol. 299:233-243.
-
(2000)
J. Mol. Biol.
, vol.299
, pp. 233-243
-
-
Lu, H.1
Booth, P.J.2
-
42
-
-
1042282952
-
π-π stacking interactions in the peridinin-chlorophyll-protein of Amphidinium carterae
-
Mao, L., Y. Wang, and X. Hu. 2003. π-π stacking interactions in the peridinin-chlorophyll-protein of Amphidinium carterae. J. Phys. Chem. B. 107:3963-3971.
-
(2003)
J. Phys. Chem. B
, vol.107
, pp. 3963-3971
-
-
Mao, L.1
Wang, Y.2
Hu, X.3
-
43
-
-
0029637583
-
Crystal structure of an integral membrane light-harvesting complex from photosynthetic bacteria
-
McDermott, G., S. Prince, A. Freer, A. Hawthomthwaite-Lawless, M. Papiz, R. Cogdell, and N. Isaacs. 1995. Crystal structure of an integral membrane light-harvesting complex from photosynthetic bacteria. Nature. 374:517-521.
-
(1995)
Nature
, vol.374
, pp. 517-521
-
-
McDermott, G.1
Prince, S.2
Freer, A.3
Hawthomthwaite-Lawless, A.4
Papiz, M.5
Cogdell, R.6
Isaacs, N.7
-
45
-
-
84995104940
-
The mechanism of singlet-singlet excitation energy transfer from carotenoids to chlorophyll
-
Naqvi, K. R. 1980. The mechanism of singlet-singlet excitation energy transfer from carotenoids to chlorophyll. Photochem. Photobiol. 31:523-524.
-
(1980)
Photochem. Photobiol.
, vol.31
, pp. 523-524
-
-
Naqvi, K.R.1
-
46
-
-
0015386420
-
Unambiguous evidence for the participation of singlet oxygen (1) in photodynamic oxidation of amino acids
-
Nilsson, R., P. B. Merkel, and D. Kearns. 1972. Unambiguous evidence for the participation of singlet oxygen (1) in photodynamic oxidation of amino acids. Photochem. Photobiol. 16:117-124.
-
(1972)
Photochem. Photobiol.
, vol.16
, pp. 117-124
-
-
Nilsson, R.1
Merkel, P.B.2
Kearns, D.3
-
47
-
-
0029117927
-
Tetrahedron report number-378 - The CH/π interaction-significance in molecular recognition
-
Nishio, M., Y. Umezawa, M. Hirota, and Y. Takeuchi. 1995. Tetrahedron report number-378 - the CH/π interaction-significance in molecular recognition. Tetrahedron. 51:8665-8701.
-
(1995)
Tetrahedron
, vol.51
, pp. 8665-8701
-
-
Nishio, M.1
Umezawa, Y.2
Hirota, M.3
Takeuchi, Y.4
-
48
-
-
0025249842
-
Membrane protein folding and oligomerization: The two-stage model
-
Popot, J., and D. Engelman. 1990. Membrane protein folding and oligomerization: the two-stage model. Biochemistry. 29:4031-4037.
-
(1990)
Biochemistry
, vol.29
, pp. 4031-4037
-
-
Popot, J.1
Engelman, D.2
-
49
-
-
0035917319
-
Effects of chlorophyll a, chlorophyll b, and xanthophylls on the in vitro assembly kinetics of the major light-harvesting chlorophyll a/b complex, LHCIIb
-
Reinsberg, D., K. Ottmann, P. J. Booth, and H. Paulsen. 2001. Effects of chlorophyll a, chlorophyll b, and xanthophylls on the in vitro assembly kinetics of the major light-harvesting chlorophyll a/b complex, LHCIIb. J. Mol. Biol. 308:59-67.
-
(2001)
J. Mol. Biol.
, vol.308
, pp. 59-67
-
-
Reinsberg, D.1
Ottmann, K.2
Booth, P.J.3
Paulsen, H.4
-
50
-
-
0034438103
-
Efficient light harvesting through carotenoids
-
Ritz, T., A. Damjanovic, K. Schulten, J. P. Zhang, and Y. Koyama. 2000. Efficient light harvesting through carotenoids. Photosynth. Res. 66:125-144.
-
(2000)
Photosynth. Res.
, vol.66
, pp. 125-144
-
-
Ritz, T.1
Damjanovic, A.2
Schulten, K.3
Zhang, J.P.4
Koyama, Y.5
-
51
-
-
0029788346
-
Hydrogen bonding and stacking of DNA bases: A review of quantum-chemical ab initio studies
-
Sponer, J., J. Leszczynski, and P. Hobza. 1996a. Hydrogen bonding and stacking of DNA bases: a review of quantum-chemical ab initio studies. J. Biomol. Struct. Dyn. 14:117-135.
-
(1996)
J. Biomol. Struct. Dyn.
, vol.14
, pp. 117-135
-
-
Sponer, J.1
Leszczynski, J.2
Hobza, P.3
-
52
-
-
33748621478
-
Nature of nucleic acid-base stacking: Nonempirical ab initio, and empirical potential characterization of 10 stacked base dimers. Comparison of stacked and H-bonded base pairs
-
Sponer, J., J. Leszczynski, and P. Hobza. 1996b. Nature of nucleic acid-base stacking: nonempirical ab initio, and empirical potential characterization of 10 stacked base dimers. Comparison of stacked and H-bonded base pairs. J. Phys. Chem. 100:5590-5596.
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 5590-5596
-
-
Sponer, J.1
Leszczynski, J.2
Hobza, P.3
-
53
-
-
0000921920
-
Aromatic base stacking in DNA: From ab initio calculations to molecular dynamics simulations
-
Sponer, J., I. Berger, N. Spackova, J. Leszczynski, and P. Hobza. 2000. Aromatic base stacking in DNA: from ab initio calculations to molecular dynamics simulations. J. Biomol. Struct. Dyn. (Sp. Issue). S2:383-407.
-
(2000)
J. Biomol. Struct. Dyn. (Sp. Issue)
, vol.S2
, pp. 383-407
-
-
Sponer, J.1
Berger, I.2
Spackova, N.3
Leszczynski, J.4
Hobza, P.5
-
54
-
-
1442298399
-
Distributed polarizabilities
-
Stone, A. J. 1985. Distributed polarizabilities. Mol. Phys. 56:1065-1082.
-
(1985)
Mol. Phys.
, vol.56
, pp. 1065-1082
-
-
Stone, A.J.1
-
55
-
-
0004237988
-
-
University of Cambridge, Cambridge, UK
-
Stone, A., A. Dullweber, M. Hodges, and P. Wales. 1995. ORIENT: A Program for Studying Interactions Between Molecules, Ver. 3.2. University of Cambridge, Cambridge, UK.
-
(1995)
ORIENT: A Program for Studying Interactions between Molecules, Ver. 3.2
-
-
Stone, A.1
Dullweber, A.2
Hodges, M.3
Wales, P.4
-
56
-
-
0034823164
-
Olefinic vs. aromatic PI-H interaction: A theoretical investigation of the nature of interaction of first-row hydrides with ethene and benzene
-
Tarakeshwar, P., H. S. Choi, and K. S. Kim. 2001. Olefinic vs. aromatic PI-H interaction: a theoretical investigation of the nature of interaction of first-row hydrides with ethene and benzene. J. Am. Chem. Soc. 123:3323-3331.
-
(2001)
J. Am. Chem. Soc.
, vol.123
, pp. 3323-3331
-
-
Tarakeshwar, P.1
Choi, H.S.2
Kim, K.S.3
-
57
-
-
0035281210
-
Interaction energies of van der Waals and hydrogen-bonded systems calculated using density functional theory: Assessing the PW91 model
-
Tsuzuki, S., and H. P. Luthi. 2001. Interaction energies of van der Waals and hydrogen-bonded systems calculated using density functional theory: assessing the PW91 model. J. Chem. Phys. 114:3949-3957.
-
(2001)
J. Chem. Phys.
, vol.114
, pp. 3949-3957
-
-
Tsuzuki, S.1
Luthi, H.P.2
-
58
-
-
0030580842
-
Basis set effects on the calculated bonding energies of neutral benzene dimers: Importance of diffuse polarization functions
-
Tsuzuki, S., T. Uchimaru, M. Mikami, and K. Tanabe. 1996. Basis set effects on the calculated bonding energies of neutral benzene dimers: importance of diffuse polarization functions. Chem. Phys. Lett. 252:206-210.
-
(1996)
Chem. Phys. Lett.
, vol.252
, pp. 206-210
-
-
Tsuzuki, S.1
Uchimaru, T.2
Mikami, M.3
Tanabe, K.4
-
59
-
-
0032562330
-
Intermolecular interaction potentials of methane and ethylene dimers calculated with the Møller-Plesset, coupled cluster and density functional methods
-
Tsuzuki, S., T. Uchimaru, and K. Tanabe. 1998. Intermolecular interaction potentials of methane and ethylene dimers calculated with the Møller-Plesset, coupled cluster and density functional methods. Chem. Phys. Lett. 287:202-209.
-
(1998)
Chem. Phys. Lett.
, vol.287
, pp. 202-209
-
-
Tsuzuki, S.1
Uchimaru, T.2
Tanabe, K.3
-
60
-
-
0000561334
-
2CO, MeOH-MeOH, and HCOOH-HCOOH complexes
-
2CO, MeOH-MeOH, and HCOOH-HCOOH complexes. J. Chem. Phys. 110:11906-11910.
-
(1999)
J. Chem. Phys.
, vol.110
, pp. 11906-11910
-
-
Tsuzuki, S.1
Uchimaru, T.2
Matsumura, K.3
Mikami, M.4
Tanabe, K.5
-
61
-
-
0000712654
-
Effects of the higher electron correlation correction on the calculated intermolecular interaction energies of benzene and naphthalene dimers: Comparison between MP2 and CCSD(T) calculations
-
Tsuzuki, S., T. Uchimaru, K. Matsumura, M. Mikami, and K. Tanabe. 2000. Effects of the higher electron correlation correction on the calculated intermolecular interaction energies of benzene and naphthalene dimers: comparison between MP2 and CCSD(T) calculations. Chem. Phys. Lett. 319:547-554.
-
(2000)
Chem. Phys. Lett.
, vol.319
, pp. 547-554
-
-
Tsuzuki, S.1
Uchimaru, T.2
Matsumura, K.3
Mikami, M.4
Tanabe, K.5
-
62
-
-
0037045235
-
Origin of attraction and directionality of the π/π interaction: Model chemistry calculations of benzene dimer interaction
-
Tsuzuki, S., K. Honda, T. Uchimaru, M. Mikami, and K. Tanabe. 2002. Origin of attraction and directionality of the π/π interaction: model chemistry calculations of benzene dimer interaction. J. Am. Chem. Soc. 124:104-112.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 104-112
-
-
Tsuzuki, S.1
Honda, K.2
Uchimaru, T.3
Mikami, M.4
Tanabe, K.5
-
63
-
-
0037042667
-
A critical note on density functional theory studies on rare gas dimers
-
van Mourik, T., and R. J. Gdanitz. 2002. A critical note on density functional theory studies on rare gas dimers. J. Chem. Phys. 116:9620-9623.
-
(2002)
J. Chem. Phys.
, vol.116
, pp. 9620-9623
-
-
Van Mourik, T.1
Gdanitz, R.J.2
-
64
-
-
0036639008
-
Quantum chemical study of π-π stacking interactions of the bacteriochlorophyll dimer in the photosynthetic reaction center of Rhodobacter sphaeroides
-
Wang, Y., and X. Hu. 2002a. Quantum chemical study of π-π stacking interactions of the bacteriochlorophyll dimer in the photosynthetic reaction center of Rhodobacter sphaeroides. J. Chem. Phys. 117:1-4.
-
(2002)
J. Chem. Phys.
, vol.117
, pp. 1-4
-
-
Wang, Y.1
Hu, X.2
-
65
-
-
0037125522
-
A quantum chemistry study of binding carotenoids in the bacterial light-harvesting complexes
-
Wang, Y., and X. Hu. 2002b. A quantum chemistry study of binding carotenoids in the bacterial light-harvesting complexes. J. Am. Chem. Soc. 124:8445-8451.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 8445-8451
-
-
Wang, Y.1
Hu, X.2
-
66
-
-
0035980121
-
How membranes shape protein structure
-
White, S. H., A. S. Ladokhin, S. Jayasinghe, and K. Hristova. 2001. How membranes shape protein structure. J. Biol. Chem. 276:32395-32398.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 32395-32398
-
-
White, S.H.1
Ladokhin, A.S.2
Jayasinghe, S.3
Hristova, K.4
-
67
-
-
0037039459
-
Empirical correction to density functional theory for van der Waals interactions
-
Wu, Q., and W. T. Yang. 2002. Empirical correction to density functional theory for van der Waals interactions. J. Chem. Phys. 116:515-524.
-
(2002)
J. Chem. Phys.
, vol.116
, pp. 515-524
-
-
Wu, Q.1
Yang, W.T.2
-
68
-
-
0035891306
-
Towards extending the applicability of density functional theory to weakly bound systems
-
Wu, X., M. C. Vargas, S. Nayak, V. Lotrich, and G. Scoles. 2001. Towards extending the applicability of density functional theory to weakly bound systems. J. Chem. Phys. 115:8748-8757.
-
(2001)
J. Chem. Phys.
, vol.115
, pp. 8748-8757
-
-
Wu, X.1
Vargas, M.C.2
Nayak, S.3
Lotrich, V.4
Scoles, G.5
-
69
-
-
0001651836
-
Structure and organization of purple bacterial antenna complexes
-
R. E. Blankenship, M. T. Madigan, and C. E. Bauer, editors. Kluwer Academic Publishers, Dordrecht, The Netherlands
-
Zuber, H., and R. J. Cogdell. 1995. Structure and organization of purple bacterial antenna complexes. In Anoxygenic Photosynthetic Bacteria. R. E. Blankenship, M. T. Madigan, and C. E. Bauer, editors. Kluwer Academic Publishers, Dordrecht, The Netherlands. 315-348.
-
(1995)
Anoxygenic Photosynthetic Bacteria
, pp. 315-348
-
-
Zuber, H.1
Cogdell, R.J.2
-
70
-
-
0027510661
-
A structural role of the carotenoid in the light-harvesting II protein of Rhodobacter capsulatus
-
Zurdo, J., C. Femandez-Cabrera, and J. M. Ramirez. 1993. A structural role of the carotenoid in the light-harvesting II protein of Rhodobacter capsulatus. Biochem. J. 290:531-537.
-
(1993)
Biochem. J.
, vol.290
, pp. 531-537
-
-
Zurdo, J.1
Femandez-Cabrera, C.2
Ramirez, J.M.3
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