RNA backbone rotamers - Finding your way in seven dimensions

Biochemical Society Transactions

Volumn 33, Issue 3, 2005, Pages 485-487

  Murray, L J W ^a   Richardson, J S ^a   Arendall III, W B ^a   Richardson, D C ^a  

^a DUKE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

All atom contact analysis; Data filtering; RNA backbone; RNA conformation; Rotamer

Indexed keywords

RNA;

CONFERENCE PAPER; PRIORITY JOURNAL; RNA ANALYSIS; RNA CONFORMATION; RNA SEQUENCE; RNA STRUCTURE; STRUCTURE ANALYSIS;

CRYSTALLOGRAPHY, X-RAY; MODELS, MOLECULAR; NUCLEIC ACID CONFORMATION; RNA;

EID: 21044448369     PISSN: 03005127     EISSN: None     Source Type: Journal    
DOI: 10.1042/BST0330485     Document Type: Conference Paper

References (15)

1. Duarte, C.M., Wadley, L.M. and Pyle, A.M. (2003) Nucleic Acids Res. 31, 4755-4761
2. Ban, N., Nissen, P., Hansen, J., Moore, P.B. and Steitz, T.A. (2000) Science 289, 905-920
3. Schluenzen, F., Tocilj, A., Zanvach, R., Harms, J., Gluehmann, M., Janell, D., Bashan, A., Bartels, H., Agmon, I., Franceschi, F. and Yonath, A. (2000) Cell (Cambridge, Mass.) 102, 615-623
4. Carter, A.P., Clemons, W.M., Brodersen, D.E., Morgan-Warren, R.J., Wimberly, B.T. and Ramakrishnan, V. (2000) Nature (London) 407, 340-348
5. Word, J.M., Lovell, S.C., LaBean, T.H., Taylor, H.C., Zalis, M.E., Presley, B.K., Richardson, J.S. and Richardson, D.C. (1999a) J. Mol. Biol. 285, 1711-1733
6. Lovell, S.C., Davis, I.W., Arendall, III, W.B., de Bakker, P.I.W., Word, J.M., Prisant, M.G., Richardson, J.S. and Richardson, D.C. (2003) Proteins: Struct Funct. Gen. 50, 437-450
7. Richardson, J.S., Arendall, III, W.B. and Richardson, D.C. (2003) in Methods in Enzymology: Macromolecular Crystallography, vol. 374 (Carter. Jr, C.W. and Sweet, R.M., eds.), pp. 385-412, Academic Press, New York
8. Berman, H.M., Olson, W.K., Beveridge, D.L., Westbrook, J., Gelbin, A., Demeny, T., Hsieh, S.-H., Srimvasan, A.R. and Schneider, B. (1992) Biophys. J. 63, 751-759
9. Davis, I.W., Murray, L.W., Richardson, J.S. and Richardson, D.C. (2004) Nucleic Acids Res. 32 Web Server Issue, W615-W619
10. Richardson, J.S. and Richardson, D.C. (2002) in International Tables for Crystallography, vol. F: Crystallography of Biological Macromolecules (Rossmann, M.G. and Arnold, E., eds.), pp. 727-730, Kluwer Academic Publishers, Dordrecht
11. Murray, L.J.W., Arendall, III, W.B., Richardson, D.C. and Richardson, J.S. (2003) Proc. Natl. Acad. Sci. U.S.A. 100, 13904-13909
12. Hershkovitz, E., Tannenbaum, E., Howerton, S.B., Sheth, A., Tannenbaum, A. and Williams, L.D. (2003) Nucleic Acids Res, 31, 6249-6257
13. Schneider, B., Zdenek, M. and Berman, H.M. (2004) Nucleic Acids Res. 32, 1666-1677
14. Klein, D.J., Schmeing, T.M., Moore, P.B. and Steitz, T.A. (2001) EMBO J. 20, 4214-4221
15. Adams, P.L., Stahley, M.R., Kosek, A.B., Wang, J. and Strobel, S.A. (2004) Nature (London) 430, 45-50