The crucial role of conserved intermolecular H-bonds inaccessible to the solvent in formation and stabilization of the TL5.5 SrRNA complex

Journal of Biological Chemistry

Volumn 280, Issue 16, 2005, Pages 16151-16156

  Gongadze, George M ^a   Korepanov, Alexey P ^a   Stolboushkina, Elena A ^a   Zelinskaya, Natalia V ^a   Korobeinikova, Anna V ^a   Ruzanov, Maxim V ^a   Eliseev, Boris D ^a   Nikonov, Oleg S ^a   Nikonov, Stanislav V ^a   Garber, Maria B ^a   Lim, Valery I ^b  

^a INSTITUTE OF PROTEIN RESEARCH   (Russian Federation)

^b ENGELHARDT INSTITUTE OF MOLECULAR BIOLOGY   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; ESCHERICHIA COLI; HYDROGEN BONDS; MOLECULAR BIOLOGY; MOLECULAR STRUCTURE; MUTAGENESIS; PROTEINS;

CHEMICAL COMPLEXES; INTERMOLECULAR INTERACTIONS; MUTATIONS; RESIDUES;

RNA;

AMINO ACID; RIBOSOME PROTEIN; RIBOSOME RNA; SOLVENT;

ARTICLE; BINDING SITE; CONTROLLED STUDY; ESCHERICHIA COLI; HYDROGEN BOND; MOLECULAR INTERACTION; MUTAGENESIS; MUTATION; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FUNCTION; PROTEIN INTERACTION; PROTEIN STRUCTURE; RNA BINDING; STEREOCHEMISTRY; THERMUS THERMOPHILUS;

BACTERIAL PROTEINS; ESCHERICHIA COLI; HYDROGEN BONDING; NUCLEIC ACID CONFORMATION; PROTEIN STRUCTURE, TERTIARY; RIBOSOMAL PROTEINS; RNA, RIBOSOMAL, 5S; RNA-BINDING PROTEINS; THERMUS THERMOPHILUS;

ESCHERICHIA COLI; THERMUS THERMOPHILUS;

EID: 20944444789     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M413596200     Document Type: Article

References (29)

1. Treger, M., and Westhof, E. (2001) J. Mol. Recognit. 14, 199-214
2. Brodersen, D. E., Clemons, W. M., Jr., Carter, A. P., Wimberly, B. T., and Ramakrishnan, V. (2002) J. Mol. Biol. 316, 725-768
3. Nevskaya, N., Nikonov, O., Nikulin, A., Garber, M., and Nikonov, S. (2003) in Protein structures: Kaleidoscope of Structural Properties and Functions (Uversky, V. N., ed) pp. 87-103, Kerala, India
4. Klein, D. J., Moore, P. B., and Steitz, T. A. (2004) J. Mol. Biol. 340, 141-177
5. Lu, M., and Steitz, T. A. (2000) Proc. Natl. Acad. Sci. U. S. A. 97, 2023-2028
6. Fedorov, R., Meshcheryakov, V., Gongadze, G., Fomenkova, N., Nevskaya, N., Selmer, M., Laurberg, M., Kristensen, O., Al-Karadaghi, S., Liljas, A., Garber, M., and Nikonov, S. (2001) Acta Crystallogr. Sect. D 57, 968-976
7. Völker, U., Engelmann, E., Maul, B., Riethdorf, S., Völker, A., Schmid, R., Mach, H., and Hecker, M. (1994) Microbiology 140, 741-752
8. Benson, D. A., Karsch-Mizrachi, I., Lipman, D. J., Ostell, J., and Wheeler, D. L. (2004) Nucleic Acids Res. 32, 23-26
9. Frishman, D., Mokrejs, M., Kosykh, D., Kastenmüller, G., Kolesov, G., Zubrzycki, I., Gruber, C., Geier, B., Kaps, A., Albermann, K., Volz, A., Wagner, C., Fellenberg, M., Heumann, K., and Mewes, H. (2003) Nucleic Acids Res. 31, 207-211
10. Harms, J., Schluenzen, F., Zarivach, R., Bashan, A., Gat, S., Agmon, I., Bartels, H., Franceschi, F., and Yonath, A. (2001) Cell 107, 679-688
11. Stoldt, M., Wohnert, J., Gorlach, M., and Brown, L. R. (1998) EMBO J. 17, 6377-6384
12. Gongadze, G. M., Tishchenko, S. V., Sedelnikova, S. E., and Garber, M. B. (1993) FEBS Lett. 330, 46-48
13. Douthwaite, S., Garrett, R. A., Wagner, R., and Feunteun, J. (1979) Nucleic Acids Res. 6, 2453-2470
14. Gongadze, G. M., Meshcheryakov, V. A., Serganov, A. A., Fomenkova, N. P., Mudrik, E. S., Jonsson, B. H., Liljas, A., Nikonov, S. V., and Garber, M. B. (1999) FEBS Lett. 451, 51-55
15. Korepanov, A. P., Gongadze, G. M., and Garber, M. B. (2004) Biochemistry (Mosc.) 69, 749-754
16. Gryaznova, O. I., Davydova, N. L., Gongadze, G. M., Jonsson, B. H., Garber, M. B., and Liljas, A. (1996) Biochimie (Paris) 78, 915-919
17. Rosenberg, A. H., Lade, B. N., Chui, D. S., Lin, S. W., Dunn, J. J., and Studier, F. W. (1987) Gene (Amst.) 56, 125-135
18. Studier, F. W., and Moffatt, B. A. (1986) J. Mol. Biol. 189, 113-130
19. Laemmli, U. K. (1970) Nature 227, 680-685
20. Nierhaus, K. H., and Dohme, F. (1979) Methods Enzymol. 59, 443-449
21. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd Ed., Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
22. Meshcheryakov, V. A., Gryaznova, O. I., Davydova, N. L., Mudrik, E. S., Perederina, A. A., Vasilenko, N. L., Gongadze, G. M., and Garber, M. B. (1997) Biochemistry (Mosc.) 62, 537-542
23. Serganov, A. A., Masquida, B., Westhof, E., Cachia, C., Portier, C., Garber M., Ehresmann, B., and Ehresmann, C. (1996) RNA (N. Y.) 2, 1124-1138
24. Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D. J. (1997) Nucleic Acids Res. 25, 3389-3402
25. Szymanski, M., Barciszewska, M., Erdmann, V., and Barciszewski, J. (2002) Nucleic Acids Res. 30, 176-178
26. Jones, T. A., Zou, J. Y., Cowan, S. W., and Kjeldgaard, M. (1991) Acta Crystallogr. Sect. A 47, 110-119
27. Collaborative Computational Project, Number 4 (1994) Acta Crystallogr. Sect. D 50, 760-763
28. Lim, V. I., and Curran, J. F. (2001) RNA (N. Y.) 7, 942-957
29. Nevskaya, N. A., Nikonov, O. S., Revtovich, S. V., Garber, M. B., and Nikonov, S. V. (2004) Molecular Biology (Mosc.) 38, 926-936