A ribosomal protein from Thermus thermophilus is homologous to a general shock protein

Biochimie

Volumn 78, Issue 11-12, 1996, Pages 915-919

  Gryaznova, O I ^a,b   Davydova, N L ^a,b   Gongadze, G M ^b   Jonsson, B H ^c   Garber, M B ^b   Liljas, A ^a  

^a LUND UNIVERSITY   (Sweden)

^b INSTITUTE OF PROTEIN RESEARCH   (Russian Federation)

^c UMEÅ UNIVERSITY   (Sweden)

Author keywords

5S rRNA binding protein; CTC protein; Ribosomal protein L25

Indexed keywords

HEAT SHOCK PROTEIN; RIBOSOME PROTEIN; RNA BINDING PROTEIN;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; BACILLUS SUBTILIS; CODON; CODON USAGE; CONFERENCE PAPER; DATA BASE; ESCHERICHIA COLI; GENE SEQUENCE; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTEIN RNA BINDING; SEQUENCE HOMOLOGY; THERMOPHILIC BACTERIUM; THERMUS THERMOPHILUS;

BACILLUS SUBTILIS; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; THERMUS THERMOPHILUS;

EID: 0030425948     PISSN: 03009084     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0300-9084(97)86713-2     Document Type: Conference Paper

References (44)

1. 1 Horne JR, Erdmann VA (1972) Isolation and characterization of 5S rRNA-protein complexes from Bacillus stearothermophilus and Escherichia coli ribosomes. Mol Gen Genet 119, 377-344
2. 2 Chen-Schmeisser U, Garrett RA (1977) A new method for the isolation of a 5S RNA complex with proteins L5, L18 and L25 from Escherichia coli ribosomes. FEBS Lett 74, 287-291
3. 3 Zimmermann J, Erdmann VA (1978) Identification of Escherichia coli and Bacillus stearothermophilus ribosomal proteins binding sites on Escherichia coli 5S rRNA. Mol Gen Genet 160, 247-257
4. 4 Zimmermann J, Erdmann VA (1978) Binding sites of E coli and B stearothermophilus ribosomal proteins on B stearothermophilus 5S rRNA. Nucleic Acids Res 5, 2267-2288
5. 5 Smith N, Matheson AT, Yaguchi M, Willick GE, Nazar RN (1978) The 5S RNA-protein complex from an extreme halophile Halobacterium cutirubrum. Eur J Biochem 89, 501-509
6. 6 McDougall J, Wittmann-Liebold B (1994) Comparative analysis of the protein components from 5S rRNA-protein complexes of halophilic archaebacteria. Eur J Biochem 221, 779-785
7. 7 Toukifimpa R, Romby P, Rozier C, Ehresmann C, Ehresmann B, Mache R (1989) Characterization and footprint analysis of two 5S rRNA binding proteins from spinach chloroplast ribosomes. Biochemistry 28, 5840-5846
8. 8 Zhou DX, Quigley F, Massenet O, Mache R (1989) Cotranscription of the S10- and spc-like operons in spinach chloroplasts and identification of three of their gene products. Mol Gen Genet 216, 439-445
9. 9 Carol P, Rozier C, Lazaro E, Ballesta JP, Mache R (1993) Erythromycin and 5S rRNA binding properties of the spinach chloroplast ribosomal protein CL22. Nucleic Acids Res 21, 635-639
10. 10 Chan YL, Lin A, McNally J, Wool IG (1987) The primary structure of rat ribosomal protein L5. A comparison of the sequence of amino acids in the proteins that interact with 5 S rRNA. J Biol Chem 262, 12879-12886
11. 11 Nazar RN, Yaguchi M, Willick GE, Rollin CF, Roy C (1979) The 5S rRNA binding protein from yeast (Saccaromyces cerevisiae) ribosomes. Evolution of the eucaryotic 5S rRNA binding protein. Eur J Biochem 102, 573-582
12. 12 Nendza R, Digweed M, Meyer HE, Erdmann VA, Mayr GW (1987) 5S-rRNA-containing ribonucleoproteins from rabbit muscle and liver. Complex and partial primary structures. Eur J Biochem 169, 85-95
13. 13 Wormington WM (1989) Developmental expression and 5S rRNA-binding activity of Xenopus laevis ribosomal protein L5. Mol Cell Biol 9, 5281-5288
14. 14 Erdmann VA, Lorenz E, Raderschall E, Fürste JP, Bald R, Zhang M, Betzel Ch, Wilson KS (1993) Crystallization and diffraction studies of Thermus flavus 5S rRNA and synthetic fragments of 5S rRNA. In: The Translational Apparatus (Nierhaus KH, Franceschi F, Subramanian AR, Erdmann VA, Wittmann-Liebold B, eds) Plenum Press, New York, 501-508
15. 15 Gongadze GM, Tishchenko SV, Sedelnikova SE, Garber MB (1993) Ribosomal proteins, TL4 and TL5, from Thermus thermophilus form hybrid complexes with 5S ribosomal RNA from different microorganisms. FEBS Lett 330, 46-48
16. 16 Gongadze G, Kashparov I, Lorenz S, Schroeder W, Erdmann VA, Liljas A, Garber M (1996) 5S rRNA binding ribosomal proteins from Thermus thermophilus: identification and some structural properties. FEBS Lett 386, 260-262
17. 17 Jahn O, Hartmann RK, Boeckh T, Erdmann VA (1991) Comparative analysis of ribosomal protein L5 sequences from bacteria of the genus Thermus. Biochimie 73, 669-678
18. 18 Marmur J (1961) A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218
19. 19 Yakhnin AV, Vorozheykina DP, Matvienko NI (1990) Nucleotide sequence of the Thermus thermophilus HB8 rps12 and rps7 genes coding for the ribosomal proteins S12 and S7. Nucleic Acids Res 18, 3659
20. 20 Clackson T, Güssow D, Jones PT (1991) In: PCR (McPherson MJ, Quirke P, Taylor GR, eds) Oxford University Press, New York, 187-214
21. 21 Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, 2nd edn, 9.49
22. 22 Inoue H, Nojima H, Okayama H (1990) High efficiency transformation of Escherichia coli with plasmids. Gene 96, 23-28
23. 23 Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74, 5463-5467
24. 24 Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215, 403-410
25. 25 Sedelnikova SE, Shikaeva OS, Avlijakulov NK, Muranova TA, Markova LF, Kashparov IA, Garber MB (1994) Proteins of the Thermus thermophilus ribosome. Purification of proteins from the large ribosomal subunit. Biochimie 76, 440-451
26. 26 Vysotskaya V, Tischenko S, Garber M, Kern D, Mougel M, Ehresmann C, Ehresmann B (1994) The ribosomal protein S8 from Thermus thermophilus VK1. Sequencing of the gene, overexpression of the protein in Escherichia coli and interaction with rRNA. Eur J Biochem 223, 437-445
27. 27 Sedelnikova SE, Agalarov SC, Garber MB, Yusupov MM (1987) Proteins of the Thermus thermophilus ribosomes. Purification of several individual proteins and crystallization of protein TL7. FEBS Lett 220, 227-230
28. 28 Tang BZ, Nazar RN (1991) Structure of the yeast ribosomal 5S rRNA-binding protein YL3. J Biol Chem 266, 6120-6123
29. 29 Kenmochi N, Maeda N, Tanaka T (1991) The primary structure of chicken ribosomal protein L5. Biochim Biophys Acta 1088, 445-447
30. 30 Igo MM, Losick R (1986) Regulation of a promoter that is utilized by minor forms of RNA polymerase holoenzyme in Bacillus subtilis. J Mol Biol 191, 615-624
31. 31 Völker U, Engelmann S, Maul B, Riethdorf S, Völker A, Schmid R, Mach H, Hecker M (1994) Analysis of the induction of general stress proteins of Bacillus subtilis. Microbiology 140, 741-752
32. 32 Yip KSP, Stillman TJ, Britton KL, Artymiuk PJ, Baker PJ, Sedelnikova SE, Engel PC, Pasquo A, Chiaraluce R, Consalvi V, Scandurra R, Rice DW (1995) The structure of Pyrococcus furiosus glutamate dehydrogenase reveals a key role for ion-pair networks in maintaining enzyme stability at extreme temperatures. Structure 3, 1147-1158
33. 33 Kime MJ, Moore PB (1984) Physical evidence for a domain structure in Escherichia coli 5S RNA. Biochemistry 23, 1688-1695
34. 34 Ginsberg AM, King BO, Roeder RG (1984) Xenopus 5S gene transcription factor, TFIIIA: characterization of a cDNA clone and measurement of RNA levels throughout development. Cell 39, 479-489
35. 35 VanBogelen RA, Kelley MP, Neidhardt FS (1987) Differential induction of heat shock, SOS, and oxidation stress regulons and accumulation of nucleotides in Escherichia coli. J Bacteriol 169, 26-32
36. 36 Bourgaize DB, Phillips TA, VanBogelen RA, Jones PG, Neidhardt FS, Fournier MJ (1990) Loss of 4.5S RNA induces the heat shock response and lambda prophage in Escherichia coli. J Bacteriol 172, 1151-1154
37. 37 VanBogelen RA, Neidhardt FS (1990) Ribosomes as sensors of heat and cold shock in Escherichia coli. Proc Natl Acad Sci USA 87, 5589-5593
38. 38 Dammel CS, Noller HF (1995) Suppression of a cold-sensitive mutation in 16S rRNA by overexpression of anovel ribosome-binding factor, RbfA. Genes Dev 9, 626-637
39. 39 Jones PG, Mitta M, Kim Y, Jiang W, Inouye M (1996) Cold shock induces a major ribosomal-associated protein that unwinds double-stranded RNA in Escherichia coli. Proc Natl Acad Sci USA 93, 76-80
40. 40 Wool IG (1993) The bifunctional nature of ribosomal proteins and speculations on their origins. In: The Translational Apparatus (Nierhaus KH, Franceschi F, Subramanian AR, Erdmann VA, Wittmann-Liebold B, eds) Plenum Press, New York, 727-737
41. 41 Wool IG (1996) Extraribosomal functions of ribosomal proteins. TIBS 21, 164-165
42. 42 Coetzee T, Herschlag D, Belfort M (1994) Escherichia coli proteins, including ribosomal protein S12, facilitate in vitro splicing of phage T4 introns by acting as RNA chaperones. Genes Dev 8, 1575-1588
43. 43 Georgellis D, Sohlberg B, Hartl FU, von Gabain A (1995) Identification of GroEL as a constituent of an mRNA-protection complex in Escherichia coli. Mol Microbiol 16, 1259-1268
44. 44 Karpel RL, Miller NS, Fresco JR (1982) Mechanistic studies of ribonucleic acid renaturation by a helix-destabilizing protein. Biochemistry 21, 2102-2108