VariScan: Analysis of evolutionary patterns from large-scale DNA sequence polymorphism data

Bioinformatics

Volumn 21, Issue 11, 2005, Pages 2791-2793

  Vilella, Albert J ^a   Blanco Garcia, Angel ^a   Hutter, Stephan ^a,b   Rozas, Julio ^a  

^a UNIVERSITY OF BARCELONA   (Spain)

^b UNIVERSITY OF MUNICH   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ACCESS TO INFORMATION; ARTICLE; BIOINFORMATICS; COMPUTER PROGRAM; DATA ANALYSIS; DNA POLYMORPHISM; DNA SEQUENCE; EVOLUTION; GENETIC ANALYSIS; GENOME ANALYSIS; HUMAN; INFORMATION PROCESSING; POPULATION GENETICS; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 20744455231     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti403     Document Type: Article

References (15)

1. Daubechies,I. (1992) Ten Lectures on Wavelets. SIAM, Philadelphia.
2. Hudson,R.R. (1990) Gene genealogies and the coalescent process. Oxf. Surv. Evol. Biol., 7, 1-44.
3. Kent,W.J. et al. (2002) The Human Genome Browser at UCSC. Genome Res., 12, 996-1006.
4. Kingman,J.F.C. (1982) On the genealogy of large populations. J. Appl. Prob., 19A, 27-43.
5. Liò,P. (2003) Wavelets in bioinformatics and computational biology: state of art and perspectives. Bioinformatics, 19, 2-9.
6. Liò,P. and Vanucci,M. (2000) Finding pathogenicity islands and gene transfer events in genome data. Bioinformatics, 16, 932-940.
7. Mallat,S. (1999) A Wavelet Tour of Signal Processing. 2nd edn. Academic Press, San Diego.
8. Olson,S. (2002) Seeking the signs of selection. Science, 298, 1324-1325.
9. Patil,N. et al. (2001) Blocks of limited haplotype diversity revealed by high-resolution scanning of human chromosome 21. Science, 294, 1719-1723.
10. Quesada,H. et al. (2003) Large-Scale Adaptive Hitchhiking upon High Recombination. Genetics, 165, 895-900.
11. Rosenberg,N.A. and Nordborg,M. (2002) Genealogical trees, coalescent theory, and the analysis of genetic polymorphisms. Nat. Rev. Genet., 3, 380-390.
12. Rozas,J. and Rozas,R. (1995) DnaSP, DNA sequence polymorphism: an interactive program for estimating population genetics parameters from DNA sequence data. Comput. Appl. Biosci., 11, 621-625.
13. Rozas,J. et al. (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics, 19, 2496-2497.
14. Sabeti,P.C. et al. (2002) Detecting recent positive selection in the human genome from haplotype structure. Nature, 419, 832-837.
15. Stein,L.D. et al. (2002) The generic genome browser: a building block for a model organism system database. Genome Res., 12, 1599-1610.