메뉴 건너뛰기




Volumn 165, Issue 2, 2003, Pages 895-900

Large-Scale Adaptive Hitchhiking Upon High Recombination in Drosophila simulans

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; DROSOPHILA SIMULANS; GENETIC LINKAGE; GENETIC RECOMBINATION; GENETIC VARIABILITY; HAPLOTYPE; NATURAL SELECTION; NONHUMAN; PREDICTION; PRIORITY JOURNAL;

EID: 0242349683     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (27)

References (41)
  • 2
    • 0035546073 scopus 로고    scopus 로고
    • Adaptive hitchhiking effects on genome variability
    • ANDOLFATTO, P., 2001 Adaptive hitchhiking effects on genome variability. Curr. Opin. Genet. Dev. 11: 635-641.
    • (2001) Curr. Opin. Genet. Dev. , vol.11 , pp. 635-641
    • Andolfatto, P.1
  • 3
    • 0033828706 scopus 로고    scopus 로고
    • A genome-wide departure from the standard neutral model in natural populations of Drosophila
    • ANDOLFATTO, P., and M. PRZEWORSKI, 2000 A genome-wide departure from the standard neutral model in natural populations of Drosophila. Genetics 156: 257-268.
    • (2000) Genetics , vol.156 , pp. 257-268
    • Andolfatto, P.1    Przeworski, M.2
  • 4
    • 0032713910 scopus 로고    scopus 로고
    • Unusual haplo-type structure at the proximal breakpoint of In(2L)t in a natural population of Drosophila melanogaster
    • ANDOLFATTO, P., J. D. WALL and M. KREITMAN, 1999 Unusual haplo-type structure at the proximal breakpoint of In(2L)t in a natural population of Drosophila melanogaster. Genetics 153: 1297-1311.
    • (1999) Genetics , vol.153 , pp. 1297-1311
    • Andolfatto, P.1    Wall, J.D.2    Kreitman, M.3
  • 5
    • 0003455528 scopus 로고
    • Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • ASHBURNER, M., 1989 Drosophila: A Laboratory Handbook. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (1989) Drosophila: A Laboratory Handbook
    • Ashburner, M.1
  • 6
    • 0026342994 scopus 로고
    • Molecular population genetics of the distal portion of the X chromosome in Drosophila: Evidence for genetic hitchhiking of the yellow-achaete region
    • BEGUN, D. J., and C. F. AQUADRO, 1991 Molecular population genetics of the distal portion of the X chromosome in Drosophila: evidence for genetic hitchhiking of the yellow-achaete region. Genetics 129: 89-99.
    • (1991) Genetics , vol.129 , pp. 89-99
    • Begun, D.J.1    Aquadro, C.F.2
  • 7
    • 0029022711 scopus 로고
    • Molecular variation at the vermilion locus in geographically diverse populations of Drosophila melanogaster and D. simulans
    • BEGUN, D. J., and C. F. AQUADRO, 1995 Molecular variation at the vermilion locus in geographically diverse populations of Drosophila melanogaster and D. simulans. Genetics 140: 1019-1032.
    • (1995) Genetics , vol.140 , pp. 1019-1032
    • Begun, D.J.1    Aquadro, C.F.2
  • 8
    • 0027305597 scopus 로고
    • The effect of deleterious mutations on neutral molecular variation
    • CHARLESWORTH, B., M. T. MORGAN and D. CHARLESWORTH, 1993 The effect of deleterious mutations on neutral molecular variation. Genetics 134: 1289-1303.
    • (1993) Genetics , vol.134 , pp. 1289-1303
    • Charlesworth, B.1    Morgan, M.T.2    Charlesworth, D.3
  • 9
    • 0031773191 scopus 로고    scopus 로고
    • Neutrality tests based on the distribution of haplotypes under an infinite site model
    • DEPAULIS, F., and M. VEUILLE, 1998 Neutrality tests based on the distribution of haplotypes under an infinite site model. Mol. Biol. Evol. 15: 1788-1790.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1788-1790
    • Depaulis, F.1    Veuille, M.2
  • 10
    • 0037186608 scopus 로고    scopus 로고
    • Testing the neutral theory of molecular evolution with genomic data from Drosophila
    • FAY, J. C., G. J. WYCKOFF and C.-I WU, 2002 Testing the neutral theory of molecular evolution with genomic data from Drosophila. Nature 415: 1024-1026.
    • (2002) Nature , vol.415 , pp. 1024-1026
    • Fay, J.C.1    Wyckoff, G.J.2    Wu, C.-I.3
  • 13
    • 0020744702 scopus 로고
    • Properties of a neutral allele model with intragenic recombination
    • HUDSON, R. R., 1983 Properties of a neutral allele model with intragenic recombination. Theor. Popul. Biol. 23: 183-201.
    • (1983) Theor. Popul. Biol. , vol.23 , pp. 183-201
    • Hudson, R.R.1
  • 14
    • 0001935493 scopus 로고
    • Gene genealogies and the coalescent process
    • edited by P. H. HARVEY and L. PARTRIDGE. Oxford University Press, New York
    • HUDSON, R. R., 1990 Gene genealogies and the coalescent process, pp. 1-44 in Oxford Surveys in Evolutionary Biology, edited by P. H. HARVEY and L. PARTRIDGE. Oxford University Press, New York.
    • (1990) Oxford Surveys in Evolutionary Biology , pp. 1-44
    • Hudson, R.R.1
  • 15
    • 0022211482 scopus 로고
    • Statistical properties of the number of recombination events in the history of a sample of DNA sequences
    • HUDSON, R. R., and N. L. KAPLAN, 1985 Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics 111: 147-164.
    • (1985) Genetics , vol.111 , pp. 147-164
    • Hudson, R.R.1    Kaplan, N.L.2
  • 16
    • 0028846610 scopus 로고
    • Deleterious background mutations with recombination
    • HUDSON, R. R., and N. L. KAPLAN, 1995 Deleterious background mutations with recombination. Genetics 141: 1605-1617.
    • (1995) Genetics , vol.141 , pp. 1605-1617
    • Hudson, R.R.1    Kaplan, N.L.2
  • 17
    • 0023339852 scopus 로고
    • A test of neutral molecular evolution based on nucleotide data
    • HUDSON, R. R., M. KREITMAN and M. AGUADÉ, 1987 A test of neutral molecular evolution based on nucleotide data. Genetics 116: 153-159.
    • (1987) Genetics , vol.116 , pp. 153-159
    • Hudson, R.R.1    Kreitman, M.2    Aguadé, M.3
  • 18
    • 0028215929 scopus 로고
    • Evidence for positive selection in the Superoxide Dismutase (Sod) region of Drosophila melanogaster
    • HUDSON, R. R., K. BAILEY, D. SKARECKY, J. KWIATOWSKI and F. J. AYALA, 1994 Evidence for positive selection in the Superoxide Dismutase (Sod) region of Drosophila melanogaster. Genetics 136: 1329-1340.
    • (1994) Genetics , vol.136 , pp. 1329-1340
    • Hudson, R.R.1    Bailey, K.2    Skarecky, D.3    Kwiatowski, J.4    Ayala, F.J.5
  • 19
    • 0024372736 scopus 로고
    • The "hitch-hiking effect" revisited
    • KAPLAN, N. L., R. R. HUDSON and C. H. LANGLEY, 1989 The "hitch-hiking effect" revisited. Genetics 123: 887-899.
    • (1989) Genetics , vol.123 , pp. 887-899
    • Kaplan, N.L.1    Hudson, R.R.2    Langley, C.H.3
  • 20
    • 0036189827 scopus 로고    scopus 로고
    • Detecting the local signature of genetic hitchhiking along a recombining chromosome
    • KIM, Y., and W. STEPHAN, 2002 Detecting the local signature of genetic hitchhiking along a recombining chromosome. Genetics 160: 765-777.
    • (2002) Genetics , vol.160 , pp. 765-777
    • Kim, Y.1    Stephan, W.2
  • 22
    • 0028818480 scopus 로고
    • Haplotype test reveals departure from neutrality in a segment of the white gene of Drosophila melanogaster
    • KIRBY, D. A., and W. STEPHAN, 1995 Haplotype test reveals departure from neutrality in a segment of the white gene of Drosophila melanogaster. Genetics 141: 1483-1490.
    • (1995) Genetics , vol.141 , pp. 1483-1490
    • Kirby, D.A.1    Stephan, W.2
  • 23
    • 0029816202 scopus 로고    scopus 로고
    • Multi-locus selection and the structure of variation at the white gene of Drosophila melanogaster
    • KIRBY, D. A., and W. STEPHAN, 1996 Multi-locus selection and the structure of variation at the white gene of Drosophila melanogaster. Genetics 144: 635-645.
    • (1996) Genetics , vol.144 , pp. 635-645
    • Kirby, D.A.1    Stephan, W.2
  • 24
    • 0036139211 scopus 로고    scopus 로고
    • MEGA2. Molecular evolutionary genetics analysis software
    • KUMAR, S. K., K. TAMURA, I. B. JAKOBSEN and M. NEI, 2001 MEGA2. Molecular evolutionary genetics analysis software. Bioinformatics 17: 1244-1245.
    • (2001) Bioinformatics , vol.17 , pp. 1244-1245
    • Kumar, S.K.1    Tamura, K.2    Jakobsen, I.B.3    Nei, M.4
  • 25
    • 0000792280 scopus 로고
    • Historical biogeography of the Drosophila melanogaster species group
    • LACHAISE, D., M.-L. CARIOU, J. R. DAVID, F. LEMEUNIER, L. TSACAS et al., 1984 Historical biogeography of the Drosophila melanogaster species group. Evol. Biol. 22: 159-255.
    • (1984) Evol. Biol. , vol.22 , pp. 159-255
    • Lachaise, D.1    Cariou, M.-L.2    David, J.R.3    Lemeunier, F.4    Tsacas, L.5
  • 27
    • 0016220238 scopus 로고
    • The hitch-hiking effect of a favourable gene
    • MAYNARD SMITH, J., and J. HAIGH, 1974 The hitch-hiking effect of a favourable gene. Genet. Res. 23: 23-35.
    • (1974) Genet. Res. , vol.23 , pp. 23-35
    • Maynard Smith, J.1    Haigh, J.2
  • 28
    • 0035808561 scopus 로고    scopus 로고
    • Chromosomal effects of rapid gene evolution in Drosophila melanogaster
    • NURMINSKI, D., D. DE AGUIAR, C. D. BUSTAMANTE and D. L. HARTL, 2001 Chromosomal effects of rapid gene evolution in Drosophila melanogaster. Science 291: 128-130.
    • (2001) Science , vol.291 , pp. 128-130
    • Nurminski, D.1    De Aguiar, D.2    Bustamante, C.D.3    Hartl, D.L.4
  • 29
    • 0037112219 scopus 로고    scopus 로고
    • Seeking the signs of selection
    • OLSON, S., 2002 Seeking the signs of selection. Science 298: 1324-1325.
    • (2002) Science , vol.298 , pp. 1324-1325
    • Olson, S.1
  • 30
    • 0034754533 scopus 로고    scopus 로고
    • Patterns of DNA sequence variation suggest the recent action of positive selection in the janus-ocnus region of Drosophila simulans
    • PARSCH, J., C. D. MEIKLEJOHN and D. HARTL, 2001 Patterns of DNA sequence variation suggest the recent action of positive selection in the janus-ocnus region of Drosophila simulans. Genetics 159: 647-657.
    • (2001) Genetics , vol.159 , pp. 647-657
    • Parsch, J.1    Meiklejohn, C.D.2    Hartl, D.3
  • 31
    • 0034977045 scopus 로고    scopus 로고
    • Linkage disequilibrium in humans: Models and data
    • PRITCHARD, J. K., and M. PRZEWORSKI, 2001 Linkage disequilibrium in humans: models and data. Am. J. Hum. Genet. 69: 1-14.
    • (2001) Am. J. Hum. Genet. , vol.69 , pp. 1-14
    • Pritchard, J.K.1    Przeworski, M.2
  • 32
    • 0036196885 scopus 로고    scopus 로고
    • The signature of positive selection at randomly chosen loci
    • PRZEWORSKI, M., 2002 The signature of positive selection at randomly chosen loci. Genetics 160: 1179-1189.
    • (2002) Genetics , vol.160 , pp. 1179-1189
    • Przeworski, M.1
  • 33
    • 0032972599 scopus 로고    scopus 로고
    • DnaSP version 3: An integrated program for molecular population genetics and molecular evolution analysis
    • ROZAS, J., and R. ROZAS, 1999 DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15: 174-175.
    • (1999) Bioinformatics , vol.15 , pp. 174-175
    • Rozas, J.1    Rozas, R.2
  • 34
    • 0034924841 scopus 로고    scopus 로고
    • DNA variation at the rp49 gene region of Drosophila simulans: Evolutionary inferences from an unusual haplotype structure
    • ROZAS, J., M. GULLAUD, G. BLANDIN and M. AGUADÉ, 2001 DNA variation at the rp49 gene region of Drosophila simulans: evolutionary inferences from an unusual haplotype structure. Genetics 158: 1147-1155.
    • (2001) Genetics , vol.158 , pp. 1147-1155
    • Rozas, J.1    Gullaud, M.2    Blandin, G.3    Aguadé, M.4
  • 35
    • 0037167852 scopus 로고    scopus 로고
    • Detecting recent positive selection in the human genome from haplotype structure
    • SABETI, P. C., D. E. REICH, J. M. HIGGINS, H. Z. P. LEVINE, D. J. RICHTER et al., 2002 Detecting recent positive selection in the human genome from haplotype structure. Nature 419: 832-837.
    • (2002) Nature , vol.419 , pp. 832-837
    • Sabeti, P.C.1    Reich, D.E.2    Higgins, J.M.3    Levine, H.Z.P.4    Richter, D.J.5
  • 36
    • 0037186564 scopus 로고    scopus 로고
    • Adaptive protein evolution in Drosophila
    • SMITH, N. G. C., and A. EYRE-WALKER, 2002 Adaptive protein evolution in Drosophila. Nature 415: 1022-1024.
    • (2002) Nature , vol.415 , pp. 1022-1024
    • Smith, N.G.C.1    Eyre-Walker, A.2
  • 37
    • 7344226732 scopus 로고
    • The effect of strongly selected substitutions on neutral polymorphism: Analytical results based on diffusion theory
    • STEPHAN, W., T. H. E. WIEHE and M. W. LENZ, 1992 The effect of strongly selected substitutions on neutral polymorphism: analytical results based on diffusion theory. Theor. Popul. Biol. 41: 237-254.
    • (1992) Theor. Popul. Biol. , vol.41 , pp. 237-254
    • Stephan, W.1    Wiehe, T.H.E.2    Lenz, M.W.3
  • 38
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • TAJIMA, F., 1989 Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 39
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • THOMPSON, J. D., T. J. GIBSON, F. PLEWNIAK, F. JEANMOUGIN and D. G. HIGGINGS, 1997 The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25: 4876-4882.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgings, D.G.5
  • 40
    • 0037016489 scopus 로고    scopus 로고
    • Nucleotide variation along the Drosophila melanogaster fourth chromosome
    • WANG, W., K. THORNTON, A. BERRY and M. LONG, 2002 Nucleotide variation along the Drosophila melanogaster fourth chromosome. Science 295: 134-137.
    • (2002) Science , vol.295 , pp. 134-137
    • Wang, W.1    Thornton, K.2    Berry, A.3    Long, M.4
  • 41
    • 0036743492 scopus 로고    scopus 로고
    • Polymorphism patterns in two tightly linked developmental genes, Idgf1 and Idgf3, of Drosophila melanogaster
    • ZUROVCOVÁ, M., and F. J. AYALA, 2002 Polymorphism patterns in two tightly linked developmental genes, Idgf1 and Idgf3, of Drosophila melanogaster. Genetics 162: 177-188.
    • (2002) Genetics , vol.162 , pp. 177-188
    • Zurovcová, M.1    Ayala, F.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.