Antigen processing is predictable: From genes to T cell epitopes

Transplant Immunology

Volumn 14, Issue 3-4 SPEC. ISS., 2005, Pages 171-174

  Stevanovic, Stefan ^a  

^a UNIVERSITY OF TÜBINGEN   (Germany)

Author keywords

Antigen; Genes; T cell epitopes

Indexed keywords

EPITOPE; HLA ANTIGEN CLASS 1; HLA ANTIGEN CLASS 2; MINOR HISTOCOMPATIBILITY ANTIGEN; PROTEASOME;

AMINO ACID SEQUENCE; ANTIGEN FUNCTION; ANTIGEN PRESENTATION; CELLULAR IMMUNITY; CONFERENCE PAPER; DATA BASE; EPITOPE MAPPING; GENETIC ANALYSIS; GRAFT VERSUS HOST REACTION; GRAFT VERSUS LEUKEMIA EFFECT; HISTOCOMPATIBILITY; HLA SYSTEM; HUMAN; MAJOR HISTOCOMPATIBILITY COMPLEX; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN PROTEIN INTERACTION; SINGLE NUCLEOTIDE POLYMORPHISM; T LYMPHOCYTE; TRANSPLANTATION;

ANIMALS; ANTIGEN PRESENTATION; DATABASES, FACTUAL; EPITOPES, T-LYMPHOCYTE; HLA ANTIGENS; HUMANS; INTERNET; MAJOR HISTOCOMPATIBILITY COMPLEX; SOFTWARE;

EID: 20544463394     PISSN: 09663274     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.trim.2005.03.018     Document Type: Conference Paper

References (23)

1. H.G. Rammensee, K. Falk, and O. Rötzschke Peptides naturally presented by MHC class I molecules Annu Rev Immunol 11 1993 213 244
2. U. Platzbecker, G. Ehninger, and M. Bornhauser Allogeneic transplantation of CD34+ selected hematopoietic cells-clinical problems and current challenges Leuk Lymphoma 45 2004 447 453
3. B.M. Longenecker, F. Pazderka, G.R. Law, and R.F. Ruth The graft-versus-host reaction to minor alloantigens Cell Immunol 8 1973 1 11
4. L.F. Odom, C.S. August, J.H. Githens, J.R. Humbert, H. Morse, and D. Peakman Remission of relapsed leukaemia during a graft-versus-host reaction. A "graft-versus-leukaemia reaction" in man? Lancet 2 1978 537 540
5. P.J. Voogt, E. Goulmy, W.F. Veenhof, M. Hamilton, W.E. Fibbe, and J.J. Van Rood Cellularly defined minor histocompatibility antigens are differentially expressed on human hematopoietic progenitor cells J Exp Med 168 1988 2337 2347
6. J.M. den Haan, L.M. Meadows, W. Wang, J. Pool, E. Blokland, and T.L. Bishop The minor histocompatibility antigen HA-1: a diallelic gene with a single amino acid polymorphism Science 279 1998 1054 1057
7. B. Kircher, M. Wolf, S. Stevanovic, H.G. Rammensee, B. Grubeck-Loebenstein, and G. Gastl Hematopoietic lineage-restricted minor histocompatibility antigen HA-1 in graft-versus-leukemia activity after donor lymphocyte infusion J Immunother 27 2004 156 160
8. K. Falk, O. Rötzschke, S. Stevanovic, G. Jung, and H.G. Rammensee Allele-specific motifs revealed by sequencing of self-peptides eluted from MHC molecules Nature 351 1991 290 296
9. E. Spierings, B. Wieles, and E. Goulmy Minor histocompatibility antigens-big in tumour therapy Trends Immunol 25 2004 56 60
10. K.C. Parker, M.A. Bednarek, and J.E. Coligan Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual side chains J Immunol 152 1994 163 175
11. H.G. Rammensee, J. Bachmann, N. Emmerich, O.A. Bachor, and S. Stevanovic SYFPEITHI: database for MHC ligands and peptide motifs Immunogenetics 50 1999 213 219
12. H. Singh, and G.P. Raghava ProPred: prediction of HLA-DR binding sites Bioinformatics 17 2001 1236 1237
13. M. Sathiamurthy, H.D. Hickman, J.W. Cavett, A. Zahoor, K. Prilliman, and S. Metcalf Population of the HLA ligand database Tissue Antigens 61 2003 12 19
14. P. Guan, I.A. Doytchinova, C. Zygouri, and D.R. Flower MHCPred: a server for quantitative prediction of peptide-MHC binding Nucleic Acids Res 31 2003 3621 3624
15. P.A. Reche, J.P. Glutting, and E.L. Reinherz Prediction of MHC class I binding peptides using profile motifs Hum Immunol 63 2002 701 709
16. P. Dönnes, and A. Elofsson Prediction of MHC class I binding peptides, using SVMHC BMC Bioinformatics 3 2002 25
17. A.K. Nussbaum, C. Kuttler, K.P. Hadeler, H.G. Rammensee, and H. Schild PAProC: a prediction algorithm for proteasomal cleavages available on the WWW Immunogenetics 53 2001 87 94
18. C. Kesmir, A.K. Nussbaum, H. Schild, V. Detours, and S. Brunak Prediction of proteasome cleavage motifs by neural networks Protein Eng 15 2002 287 296
19. J. Hakenberg, A.K. Nussbaum, H. Schild, H.G. Rammensee, C. Kuttler, and H.G. Holzhutter MAPPP: MHC class I antigenic peptide processing prediction Appl Bioinformatics 2 2003 155 158
20. E. Spierings, A.G. Brickner, J.A. Caldwell, S. Zegveld, N. Tatsis, and E. Blokland The minor histocompatibility antigen HA-3 arises from differential proteasome-mediated cleavage of the lymphoid blast crisis (Lbc) oncoprotein Blood 102 2003 621 629
21. J.M. den Haan, N.E. Sherman, E. Blokland, E. Huczko, F. Koning, and J.W. Drijfhout Identification of a graft versus host disease-associated human minor histocompatibility antigen Science 268 1995 1476 1480
22. A.G. Brickner, E.H. Warren, J.A. Caldwell, Y. Akatsuka, T.N. Golovina, and A.L. Zarling The immunogenicity of a new human minor histocompatibility antigen results from differential antigen processing J Exp Med 193 2001 195 206
23. Y. Akatsuka, T. Nishida, E. Kondo, M. Miyazaki, H. Taji, and H. Iida Identification of a polymorphic gene, BCL2A1, encoding two novel hematopoietic lineage-specific minor histocompatibility antigens J Exp Med 197 2003 1489 1500