Characterization of complete HIV type 1 genomes from non-B subtype infections in U.S. military personnel

AIDS Research and Human Retroviruses

Volumn 21, Issue 5, 2005, Pages 424-429

  Tovanabutra, Sodsai ^a   Brodine, Stephanie K ^b,c   Mascola, John R ^d,e   Sankale, Jean Louis ^f   Sanders Buell, Eric ^a   Kim, Bohye ^a   Birx, Deborah L ^d   McCutchan, Francine E ^a  

^a HENRY M JACKSON FOUNDATION FOR THE ADVANCEMENT OF MILITARY MEDICINE   (United States)

^b SAN DIEGO STATE UNIVERSITY   (United States)

^c NAVAL MEDICAL CENTER SAN DIEGO   (United States)

^d WALTER REED ARMY INSTITUTE OF RESEARCH   (United States)

^e NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES   (United States)

^f HARVARD SCHOOL OF PUBLIC HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

HUMAN IMMUNODEFICIENCY VIRUS VACCINE;

AFRICA; ARTICLE; CENTRAL AFRICA; CORRELATION ANALYSIS; GENE CLUSTER; GENE SEQUENCE; GENETIC VARIABILITY; GEOGRAPHIC DISTRIBUTION; GEOGRAPHICAL VARIATION (SPECIES); HUMAN; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS 1 SUBTYPE A; HUMAN IMMUNODEFICIENCY VIRUS 1 SUBTYPE B; HUMAN IMMUNODEFICIENCY VIRUS 1 SUBTYPE C; HUMAN IMMUNODEFICIENCY VIRUS 1 SUBTYPE CRF01 AE; HUMAN IMMUNODEFICIENCY VIRUS 1 SUBTYPE CRF01 AG; HUMAN IMMUNODEFICIENCY VIRUS 1 SUBTYPE CRF09 CPX; HUMAN IMMUNODEFICIENCY VIRUS 1 SUBTYPE F; HUMAN IMMUNODEFICIENCY VIRUS 1 SUBTYPE G; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POPULATION RESEARCH; PRIORITY JOURNAL; RISK ASSESSMENT; SENEGAL; SEROLOGY; SOLDIER; SUBSPECIES; THAILAND; UNITED STATES; VIRUS GENOME; VIRUS RECOMBINANT; VIRUS STRAIN;

ADULT; FEMALE; GENOME, VIRAL; HIV INFECTIONS; HIV-1; HUMANS; MALE; MIDDLE AGED; MILITARY PERSONNEL; MOLECULAR SEQUENCE DATA; PHYLOGENY; RECOMBINATION, GENETIC; SEQUENCE ANALYSIS, DNA; UNITED STATES;

EID: 20444384359     PISSN: 08892229     EISSN: None     Source Type: Journal    
DOI: 10.1089/aid.2005.21.424     Document Type: Article

References (26)

1. Kuiken CL, Foley B, Freed E, Hahn B, Korber B, Marx PA, McCutchan F, Mellors JW, and Wolinksy S, Eds.:HIV Sequence Compendium 2002. Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM, LA-UR 03-3564.
2. McCutchan FE: Global diversity in HIV. In: Molecular Evolution of HIV. (Crandall KA, ed.). Johns Hopkins University Press, Baltimore, MD, 1999, pp. 41-101.
3. UNAIDS: Report on the global HIV/AIDS epidemic. [WWW. unaids.com], 2002.
4. Centers for Disease Control: Pneumocystic pneumonia-Los Angeles. MMWR 1981;30:250-252.
5. Centers for Disease Control: Kaposi's sarcoma and pneumocystic pneumonia among heterosexual men-New York City and California. MMWR 1981;30:305-308.
6. Gallo RC, Sarin PS, Gelmann EP, Robert-Guroff M, Richardson E, Kalyanaraman VS, Mann D, Sidhu GD, Stahl RE, Zolla-Pazner S, Leibowitch J, and Popovic M: Isolation of human T-cell leukemia virus in acquired immune deficiency syndrome (AIDS). Science 1983;220:865-867.
7. Barre-Sinoussi F, Chermann JC, Rey F, Nugeyre MT, Chamaret S, Gruest J, Dauguet C, Axler-Blin C, Vezinet-Brun F, Rouzioux C, Rozenbaum W, and Montagnier L: Isolation of a T-lymphotropic retrovirus from a patient at risk for acquired immune deficiency syndrome (AIDS). Science 1983;220:868-871.
8. Artenstein AW, Coppola J, Brown AE, Carr JK, Sanders-Buell E, Galbarini E, Mascola JR, VanCott TC, Schonbrood P, and McCutchan FE: Multiple introductions of HIV-1 subtype E into the western hemisphere. Lancet 1995:346:1197-1198.
9. Brodine SK, Mascola JR, Weiss PJ, Ito SI, Porter KR, Artenstein AW, Garland FC, McCutchan FE, and Burke DS: Detection of diverse HIV-1 genetic subtypes in the USA. Lancet 1995;346: 1198-1199.
10. Brodine SK, Shaffer RA, Starkey MJ, Tasker SA, Gilcrest JL, Louder MK, Barile A, VanCott TC, Vahey MT, McCutchan FE, Birx DL, Richman DD, and Mascola JR: Drug resistance patterns, genetic subtypes, clinical features, and risk factors in military personnel with HIV-1 seroconversion. Ann Intern Med 1999;131: 502-506.
11. Brodine SK, Starkey MJ, Shaffer RA, Ito SI, Tasker SA, Barile AJ, Tamminga CL, Stephan KT, Aronson NE, Fraser SL, Wallace MR, Wegner SA, Mascola JR, and McCutchan FE: Diverse HIV-1 subtypes and clinical laboratory, and behavioral factors in a recently infected US military cohort. AIDS 2003;17:2521-2527.
12. Rayfield MA, Sullivan P, Bandea CI, Britvan L, Otten RA, Pau CP, Pieniazek D, Subbarao S, Simon P, Schable CA, Wright AC, Ward J, and Schochetman G: HIV-1 group O virus identified for the first time in the United States. Emerg Infect Dis 1996;2: 209-212.
13. VanCott T, Betthke FR, Artenstein AR, McCutchan FM, McNeil JG, Mascola JR, Redfeild RR and Birx DL: Serotyping international HIV-1 isolates by V3 peptides and whole gp 160 proteins using BIA core. In: A Companion to Methods in Enzymology, 6th ed. Academic Press, San Diego, CA, 1994, pp. 188-198.
14. Salminen MO, Koch C, Sanders-Buell E, Ehrenberg PK, Michael NL, Carr JK, Burke DS, and McCutchan FE: Recovery of virtually full-length HIV-1 provirus of diverse subtypes from primary virus cultures using the polymerase chain reaction. Virology 1995;213:80-86.
15. Salminen MO, Carr JK, Robertson DL, Hegerich P, Gotte D, Koch C, Sanders-Buell E, Gao F, Sharp PM, Hahn BH, Burke DS, and McCutchan FE: Evolution and probable transmission of intersubtype recombinant human immunodeficiency virus type 1 in a Zambian couple. J Virol 1997;71:2647-2655.
16. Salminen MO: HIV protocols. In: Methods in Molecular Medicine (Michael N and Kim J, eds.). Humana Press Inc., Totowa, NJ, 1999, pp. 89-98.
17. Felsenstein J: PHYLIP (Phylogeny Inference package), 3.5c ed., 1992.
18. Maciukenas S: "Treetool" 2.0.1. ed. Ribosomal DNA Database Project, 1994.
19. Salminen MO, Carr JK, Burke DS and McCutchan FE: Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning. AIDS Res Hum Retroviruses 1995;11:1423-1425.
20. McCutchan FE, Carr JK, Murphy D, Piyasirisilp S, Gao F, Hahn B, Yu XF, Beyrer C, and Birx DL: Precise mapping of recombination breakpoints suggests a common parent of two BC recombinant HIV type 1 strains circulating in China. AIDS Res Hum Retroviruses 2002;18:1135-1140.
21. McCutchan FE, Sankali JL, M'Boup S, Kim B, Tovanabutra S, Hamel DJ, Brodine SK, Kanki PJ, and Birx DL: HIV-1 circulating recombinant form CRF09_cpx from West Africa combines subtypes A, F, G, and may share ancestors with CRF02_AG and Z321. AIDS Res Hum Retroviruses 2004;20:819-826.
22. Renzullo PO, Sateren WB, Garner RP, Milazzo MJ, Birx DL, and McNeil JG: HIV-1 seroconversion in United States Army active duty personnel, 1985-1999. AIDS 2001;15:1569-1574.
23. Gao F, Robertson DL, Morrison SG, Hui H, Craig S, Decker J, Fultz PN, Girard M, Shaw GM, Hahn BH, and Sharp PM: The heterosexual human immunodeficiency virus type 1 epidemic in Thailand is caused by an intersubtype (A/E) recombinant of African origin. J Virol 1996;70:7013-7029.
24. Anderson JP, Rodrigo AG, Learn GH, Madan A, Delahunty C, Coon M, Girard M, Osmanov S, Hood L, and Mullins JI: Testing the hypothesis of a recombinaiit origin of human immunodeficiency virus type 1 subtype E. J Virol 2000;74:10752-10765.
25. Harris ME, Serwadda D, Sewankambo N, Kirn B, Kigozi G, Kiwanuka N, Phillips JB, Wabwire F, Meehen M, Lutalo T, Lane JR, Merling R, Gray R, Wawer M, Birx DL, Robb ML, and McCutchan FE: Among 46 near full length HIV type 1 genome sequences from Rakai District, Uganda, subtype D and AD recombinants predominate. AIDS Res Hum Retroviruses 2002;18:1281-1290.
26. Achkar J, Burda S, Konings M, Urbanski M, Williams D, Seifen M, Kahirimbanyi M, Parla M, Lupatkin S, Zolla-Pazner S, and Nyambi P: Infection with non-B HIV-1 subtypes individuals living in New York City. AIDS Vaccine 2003. New York, 2003.