Linkage mapping of four chicken calpain genes

Animal Science Journal

Volumn 76, Issue 2, 2005, Pages 121-127

  Okumura, Fumihiko ^a   Shimogiri, Takeshi ^a   Shinbo, Yoko ^a   Yoshizawa, Kanako ^b   Kawabe, Kotaro ^a   Mannen, Hideyuki ^b   Okamoto, Shin ^a   Cheng, Hans H ^c   Maeda, Yoshizane ^a  

^a KAGOSHIMA UNIVERSITY   (Japan)

^b KOBE UNIVERSITY   (Japan)

^c AGRICULTURAL RESEARCH SERVICE   (United States)

Author keywords

Calpain; Chicken; Linkage map; Polymerase chain reaction restriction fragment length polymorphism

Indexed keywords

GALLUS GALLUS;

EID: 20444383903     PISSN: 13443941     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1740-0929.2005.00246.x     Document Type: Article

References (24)

1. Crittenden LB, Provencher L, Levin I, Abplanalp H, Briles RW, Briles WE, Dodgson JB. 1993. Characterization of a red jungle fowl by white leghorn backcross reference population for molecular mapping of the chicken genome. Poultry Science 72, 334-348.
2. Dayton WR, Schollmeyer JV, Lepley RA, Cortes LR. 1981. A calcium-activated protease possibly involved in myofibrillar protein turnover. Isolation of a low-calcium-requiring form of the protease. Biochimica et Biophysica Acta 659, 48-61.
3. Genome Bioinformatics Group of UC Santa Cruz. 2004. Chicken genome browser gateway. UCSC Genome Bioinformatiocs [homepage on the Internet]. Washington University School of Medicine, St. Louis, WA; [cited 10 June 2004]. Available from URL: http://genome.ucsc.edu/cgi-bin/hgGateway?org=Chicken&db= 0&hgsid=38039630/
4. Groenen MA, Cheng HH, Bumstead N, Benkel BF, Briles WE, Burke T, Burt DW, Crittenden LB, Dodgson J, Hillel J, Lamont S, de Leon AP, Soller M, Takahashi H, Vignal A. 2000. A consensus linkage map of the chicken genome. Genome Research 10, 137-147.
5. Hashimoto E, Takeuchi F, Yamamura H. 1990. Protease-activated form of protein kinase C with Mr 80 000 generated from rat liver plasma membrane by trypsin-like protease. Biochemistry International 21, 949-957.
6. Johari S, Maeda Y, Okamoto S, Hashiguchi T. 1993. Comparison of calpain and calpastatin activities in skeletal muscle of broiler and layer chickens. British Poultry Science 34, 819-824.
7. King LE, Gates RE. 1985. Calcium-activated neutral protease purified from beef lung: properties and use in defining structure of epidermal growth factor receptors. Archives of Biochemistry and Biophysics 242, 146-156.
8. Koohmaraie M. 1992. Effect of pH, temperature, and inhibitors on autolysis and catalytic activity of bovine skeletal muscle mu-calpain. Journal of Animal Science 70, 3071-3080.
9. Kosambi DD. 1944. The estimation of map distances from recombination values. Annals of Eugenics 12, 172-175.
10. Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L. 1987. MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1, 174-181.
11. Lee EJ, Yoshizawa K, Mannen H, Kikuchi H, Kikuchi T, Mizutani M, Tsuji S. 2002. Localization of the muscular dystrophy AM locus using a chicken linkage map constructed with the Kobe University resource family. Animal Genetics 33, 42-48.
12. Maeda Y, Kawabe K, Okamoto S, Hashiguchi T. 1991. General studies on muscle protein turnover rate and calcium activated neutral protease activity in skeletal muscle of the Japanese quail, Coturnix coturnix japonica. Animal Science and Technology 62, 813-821.
13. Maeda Y, Okamoto S, Okano K, Tomita T, Hashiguchi T. 1990. The comparison of muscle protein turnover rate among the egg type, meat type and Japanese native chicken stocks. Japanese Journal of Zootechnical Science 61, 701-706.
14. National Center for Biotechnology Information (NCBI). 1988. Nucleotide-nucleotide BLAST (blastn). NCBI BLAST [homepage on the Internet]. National Center for Biotechnology Information, Bethesda, MD; [cited 27 June 2003]. Available from URL: http://www.ncbi.nlm.nih.gov/blast/
15. National Center for Biotechnology Information (NCBI). 1988. NCBI map viewer (homo sapiens; chromosome 1). National Center for Biotechnology Information [homepage on the Internet]. National Center for Biotechnology Information, Bethesda, MD; [cited 12 September 2003]. Available from URL: http://www.ncbi.nlm.nih.gov/mapview/maps.cgi?taxid=9606&chr=1
16. National Center for Biotechnology Information (NCBI). 1988. NCBI map viewer (homo sapiens; chromosome 15). National Center for Biotechnology Information [Homepage on the Internet]. National Center for Biotechnology Information, Bethesda, MD; [cited 12 September 2003]. Available from URL: http://www.ncbi.nlm.nih.gov/mapview/maps.cgi?taxid=9606&chr=15
17. Ohno S, Emori Y, Imajoh S, Kawasaki H, Kisaragi M, Suzuki K. 1984. Evolutionary origin of a calcium-dependent protease by fusion of genes for a thiol protease and a calcium-binding protein? Nature 5994, 566-570.
18. Richard I, Broux O, Allamand V, Fougerousse F, Chiannilkulchai N, Bourg N, Brenguier L, Devaud C, Pasturaud P, Roudaut C, Hillaire D, Passos-Bueno M, Zatz M, Tischfield J, Fardeau M, Jackson C, Cohen D, Beckmann J. 1995. Mutations in the proteolytic enzyme calpain 3 cause limb-girdle muscular dystrophy type 2A. Cell 81, 27-40.
19. Schmid M, Nanda I, Guttenbach M, Steinlein C, Hoehn M, Schartl M, Haaf T, Weigend S, Fries R, Buerstedde JM, Wimmers K, Burt DW, Smith J, A'Hara S, Law A, Griffin DK, Bumstead N, Kaufman J, Thomson PA, Burke T, Groenen MA, Crooijmans RP, Vignal A, Fillon V, Morisson M, Pitel F, Tixier-Boichard M, Ladjali-Mohammedi K, Hillel J, Maki-Tanila A, Cheng HH, Delany ME, Burnside J, Mizuno S. 2000. First report on chicken genes and chromosomes 2000. Cytogenetics and Cell Genetics 90, 169-218.
20. Shoeman RL, Traub P. 1990. The in vitro DNA-binding properties of purified nuclear lamin proteins and vimentin. Journal of Biological Chemistry 265, 9055-9061.
21. Smith TP, Casas E, Rexroad CE, 3rd Kappes SM, Keele JW. 2000. Bovine CAPN1 maps to a region of BTA29 containing a quantitative trait locus for meat tenderness. Journal of Animal Science 78, 2589-2594.
22. Sorimachi H, Imajoh-Ohmi S, Emori Y, Kawasaki H, Ohno S, Minami Y, Suzuki K. 1989. Molecular cloning of a novel mammalian calcium-dependent protease distinct from both m- and mu-types. Specific expression of the mRNA in skeletal muscle. Journal of Biological Chemistry 264, 20106-20111.
23. Sorimachi H, Suzuki K. 2001. The structure of calpain. Journal of Biochemistry 129, 653-664.
24. Suchyta SP, Cheng HH, Burnside J, Dodgson JB. 2001. Comparative mapping of chicken anchor loci orthologous to genes on human chromosomes 1, 4 and 9. Animal Genetics 32, 12-18.