Gamma carbonic anhydrase like complex interact with plant mitochondrial complex I

Plant Molecular Biology

Volumn 56, Issue 6, 2004, Pages 947-957

  Perales, Mariano ^a   Parisi, Gustavo ^b   Fornasari, María Silvina ^b   Colaneri, Alejandro ^a   Villarreal, Fernando ^a   González Schain, Nahuel ^a   Echave, Julián ^b   Gómez Casati, Diego ^a   Braun, Hans Peter ^c   Araya, Alejandro ^d   Zabaleta, Eduardo ^a,e  

^a INSTITUTO DE INVESTIGACIONES BIOTECNOLÓGICAS   (Argentina)

^b UNIVERSIDAD NACIONAL DE QUILMES   (Argentina)

^c LEIBNIZ UNIVERSITY HANNOVER   (Germany)

^d CNRS   (France)

^e UNIVERSIDAD NACIONAL DE MAR DEL PLATA   (Argentina)

Author keywords

Complex I; Gamma carbonic anhydrase; Plant mitochondria; Respiratory chain

Indexed keywords

AMINO ACIDS; GENES; PROTEINS;

ARABIDOPSIS THALIANA; GAMMA CARBONIC ANHYDRASE; PLANT EVOLUTION; PROTEIN SEQUENCE;

PLANTS (BOTANY);

ARABIDOPSIS PROTEIN; CARBONATE DEHYDRATASE; ISOENZYME; MITOCHONDRIAL PROTEIN; OLIGOPEPTIDE; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE DEHYDROGENASE (UBIQUINONE);

AMINO ACID SEQUENCE; ARABIDOPSIS; ARTICLE; BINDING SITE; CELL CULTURE; CHEMICAL STRUCTURE; CHEMISTRY; CYTOLOGY; DIMERIZATION; GENETIC VARIABILITY; GENETICS; METABOLISM; MITOCHONDRION; PHYLOGENY; PROTEIN BINDING; PROTEIN TERTIARY STRUCTURE; TRANSPORT AT THE CELLULAR LEVEL; TWO DIMENSIONAL GEL ELECTROPHORESIS; TWO HYBRID SYSTEM; YEAST;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; BINDING SITES; BIOLOGICAL TRANSPORT; CARBONIC ANHYDRASES; CELLS, CULTURED; DIMERIZATION; ELECTRON TRANSPORT COMPLEX I; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; ISOENZYMES; MITOCHONDRIA; MITOCHONDRIAL PROTEINS; MODELS, MOLECULAR; OLIGOPEPTIDES; PHYLOGENY; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; REPETITIVE SEQUENCES, AMINO ACID; TWO-HYBRID SYSTEM TECHNIQUES; VARIATION (GENETICS); YEASTS;

AMINO ACIDS; EVOLUTION; GENES; MITOCHONDRIA; PLANTS; PROTEINS;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 20244389411     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11103-004-6324-z     Document Type: Article

References (40)

1. B.E. Alber J.G. Ferry 1994 A carbonic anhydrase from the archaeon Methanosarcina thermophila Proc. Natl. Acad. Sci. USA 91 6909 6913
2. 2 concentrating mechanisms in cyanobacteria: molecular components, their diversity and evolution J. Exp. Bot. 54 609 622
3. M.V. Busi C. Bustamante M.C. D'Angelo M. Hidalgo-Cuevas M. Boggio E. Valle E. Zabaleta 2003 MADS box expressed during tomato seed and fruit development Plant Mol. Biol. 54 801 815
4. C. Combet C. Blanchet C. Geourjon G. Deleage 2000 NPS@: network protein sequence analysis Trends Biochem. Sci. 25 147 150
5. J.A. Cuff E. Birney M. Clamp G. Barton 2000 ProtEST: protein multiple sequence alignments from expressed sequence tags Bioinformatics 16 111 116
6. H. Eubel L. Jänsch H.-P. Braun 2003 New Insights into the respiratory chain of plant mitochondria. Supercomplexes and a unique composition of complex II Plant Physiol. 133 274 286
7. H. Eubel J. Heinemeyer H.-P. Braun 2004 Identification and characterization of respirosome in potato mitochondria Plant Physiol. 134 1450 1459
8. Felsenstein, J. 1993. PHYLIP (Phylogeny Inference Package) version 3.5c. Distributed by the author. Department of Genetics, Univ. of Washington, Seatle
9. M. Ferraroni S. Tilli F. Briganti W. Chegwidden C. Supuran K. Wiebauer R. Tashian A. Scozzafava 2002 Crystal structure of a zinc-activated variant of human carbonic anhydrase I, CA I Michigan 1: evidence for a second zinc binding site involving arginine coordination Biochemistry 41 6237 6244
10. D. Gietz A. St Jean A. Woods R. Schiesti 1992 Improved method for high efficiency transformation of intact yeast cells Nucl. Acids Res. 20 1425
11. J.L. Heazlewood K. Howell A.H. Millar 2003 Mitochondrial complex I from Arabidopsis and rice: orthologs of mammalian and fungal components coupled with plantspecific subunits Biochim. Biophys. Acta 1604 159 169
12. U. Herz W. Schroder A. Liddell C.J. Leaver A. Brennicke L. Grohmann 1994 Purification of the NADH:ubiquinone oxidoreductase (complex I) of the respiratory chain from the inner mitochondrial membrane of Solanum tuberosum J. Biol. Chem. 269 2263 2269
13. D. Hewett-Emmett R.E. Tashian 1996 Functional diversity, conservation, and convergence in the evolution of the alpha-, beta-, and gamma-carbonic anhydrase gene families Mol. Phylogenet. Evol. 5 50 77
14. D. Hewett-Emmett 2000 Evolution and distribution of the carbonic anhydrase gene families W.R. Chegwidden N.D. Carter Y.H. Edwards The Carbonic Anhdyrases. New Horizons Birkhäuser Verlag Basel 29 76
15. T.M. Iverson B.E. Alber C. Kisker J.G. Ferry D.C. Rees 2000 A closer look at the active site of gamma-class carbonic anhydrases: high-resolution crystallographic studies of the carbonic anhydrase from methanosarcina thermophila Biochemistry 39 9222 9231
16. L.A. Kelley R.M. MacCallum M.J. Sternberg 2000 Enhanced genome annotation using structural profiles in the program 3D-PSSM J. Mol. Biol. 299 499 520
17. C. Kisker H. Schindelin B.E. Alber J.G. Ferry D.C. Rees 1996 A left-hand beta-helix revealed by the crystal structure of a carbonic anhydrase from the archaeon Methanosarcina thermophila EMBO J. 15 2323 2330
18. V. Kruft H. Eubel L. Jänsch W. Werhahn H-P. Braun 2001 Proteomic approach to identify novel mitochondrial proteins in Arabidopsis Plant Physiol 127 1694 1710
19. C.A. Lesburg C.C. Huang D. Christianson C.A. Fierke 1997 Histidine carboxamide ligand substitutions in the zinc binding site of carbonic anhydrase Ii alter metal coordination geometry but retain catalytic activity Biochemistry 36 15780 15791
20. S. Leterme M. Boutry 1993 Purification and preliminary characterization of mitochondrial complex I (NADH: ubiquinone reductase) from broad bean (Vicia faba L.) Plant Physiol 102 435 443
21. 2 hydration in the cyanobacterium, Synechococcus sp. PCC7942 Mol. Microbiol. 43 425 435
22. C. Merlin M. Masters S. McAteer A. Coulson 2003 Why is carbonic anhydrase essential to Escherichia coli? J. Bacteriol. 185 6415 6424
23. Millar, A.H., Eubel, H., Jansch, L., Kruft, V., Heazlewood, J.L. and Braun, H.P. 2004. Mitochondrial cytochrome c oxidase and succinate dehydrogenase complexes contain plant specific subunits. Plant Mol. Biol. (in press)
24. K. McCall C. Fierke 2004 Probing determinants of the metal ion selectivity in carbonic anhydrase using mutagenesis Biochemistry 43 3979 3986
25. L.J. McGuffin K. Bryson D.T. Jones 2000 The PSIPRED protein structure prediction server Bioinformatics 16 404 405
26. G. Parisi M. Fornasari J. Echave 2000 Evolutionary analysis of gamma-carbonic anhydrase structurally related proteins Mol. Phylogene. Evol. 14 323 334
27. Parisi, G., Perales, M., Fornasari, M.S., Colaneri, A., González-Shain, N., Gómez-Casati, D., Zimmermann, S., Brennicke, A., Araya, A., Ferry, J.G., Echave, J. and Zabaleta, E. 2004a. Gamma Carbonic Anhydrases in Plant Mitochondria. Plant Mol. Biol. (In press)
28. Parisi, G. Fornasari, M.S. and Echave, J. 2004b. Dynactins p25 and p27 are predicted to adopt the LβH fold FEBS lett. (In press)
29. G.D. Price S.M. Hewit K. Harrison M.R. Badger 1993 Analysis of genomic DNA region from the cyanobacteria Synechococcus sp strain PCC7942 involved in carboxysome assembly and function J. Bacteriol. 175 2871 2879
30. C.R. Raetz S.L. Roderick 1995 A left-handed parallel beta helix in the structure of UDP-N-acetylglucosamine acyltransferase Science 270 997 1000
31. A. Sali T.L. Blundell 1993 Comparative protein modeling by satisfaction of spatial restraints J. Mol. Biol. 234 779 815
32. J. Sambrook D. Russell 2001 Molecular Cloning, a Laboratory Manual. 3rd edn Cold Spring Harbor Laboratory Press New York
33. H. Schägger 2001 Blue-native gels to isolate protein complexes from mitochondria Meth. Cell Biol. 65 231 244
34. H. Schägger K. Pfeiffer 2000 The ratio of oxidative phosphorylation complexes I-V in bovine heart mitochondria and the composition of respiratory chain supercomplexes EMBO J. 19 1777 1783
35. K. Smith S.C. Jakubzick T.S. Whittam J.G. Ferry 1999 Carbonic anhydrase is an ancient enzyme widespread in prokaryotes Proc. Natl. Acad. Sci. USA 96 15184 15189
36. J.D. Thompson T.D. Gibson F. Plewniak F. Jeanmougin D.G. Higgins 1997 The CLUSTALX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucl. Acids Res. 25 4876 4882
37. B.C. Tripp J.G. Ferry 2000 A Structure-Function Study of a proton transport pathway in the gamma-class carbonic anhydrase from methanosarcina thermophila Biochemistry 39 9232 9240
38. B. Tripp C. Bell F. Cruz C. Krebs J.G. Ferry 2004 A role for iron in an ancient carbonic anhydrase J. Biol. Chem. 279 6683 6687
39. C.K. Tu R. Rowlett B.C. Tripp J.G. Ferry D.N. Silverman 2002 Chemical rescue of proton transfer in catalysis by carbonic anhydrases in the beta- and gamma-class Biochemistry 41 15429 15435
40. M. Vaara 1992 Eight bacterial proteins, including UDP-N-acetylglucosamine acyltransferase (LpxA) and three other transferases of Escherichia coli, consist of a six-residue periodicity theme FEMS Microbiol. Lett. 76 249 254