Molecular phylogeny of avian genus Syrmaticus based on the mitochondrial cytochrome b gene and control region

Zoological Science

Volumn 22, Issue 4, 2005, Pages 427-435

  Zhan, Xiang Jiang ^a,b,c   Zhang, Zheng Wang ^a  

^a BEIJING NORMAL UNIVERSITY   (China)

^b INSTITUTE OF ZOOLOGY   (China)

^c UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

Biogeography; Control region; Cytochrome b; Mitochondrial dna; Molecular phylogeny; Syrmaticus

Indexed keywords

CYTOCHROME B; MITOCHONDRIAL DNA; PRIMER DNA;

ANIMAL; ARTICLE; BAYES THEOREM; BIOLOGICAL MODEL; CHINA; CLASSIFICATION; COMPARATIVE STUDY; DEMOGRAPHY; DNA SEQUENCE; GALLIFORMES; GENETICS; GEOGRAPHY; JAPAN; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; REGULATOR GENE; SPECIES DIFFERENCE;

ANIMALS; BASE SEQUENCE; BAYES THEOREM; CHINA; CYTOCHROMES B; DEMOGRAPHY; DNA PRIMERS; DNA, MITOCHONDRIAL; EVOLUTION, MOLECULAR; GALLIFORMES; GEOGRAPHY; JAPAN; LOCUS CONTROL REGION; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

AVES; GALLIFORMES; SYRMATICUS; SYRMATICUS ELLIOTI; SYRMATICUS HUMIAE; SYRMATICUS MIKADO; SYRMATICUS SOEMMERRINGII;

EID: 20044375774     PISSN: 02890003     EISSN: None     Source Type: Journal    
DOI: 10.2108/zsj.22.427     Document Type: Article

References (45)

1. Baker AJ, Marshall HD (1997) Mitochondrial control region sequences as tools for understanding evolution. In "Avian Molecular Evolution and Systematics" Ed by DP Mindell et al., Academic Press, New York, pp51-75
2. Birdlife International (2001) Threatened Birds of Asia: the Birdlife International Red Data Book. Birdlife International, Cambridge
3. Burns KJ (1997) Molecular systematics of tanagers (Thraupinae): evolution and biogeography of a diverse radiation of Neotropical birds. Mol Phylogenet Evol 8: 334-348
4. Bush KL, Strobeck C (2003) Phylogenetic relationships of the phasianidae reveals possible non-pheasant taxa. J Hered 94(6): 472-489
5. Cheng TH, Tan YK, Lu TC, Tang CZ, Bao GJ, Li FL (1978) Fauna Sinica. Aves. Vol 4: Galliformes. Sciences Press, Beijing, pp182-186
6. Delacour J (1977) The Pheasants of the World. 2nd ed. World Pheasant Association and Spur Publications, London
7. Desjardins P, Morais R (1990) Sequence and gene organization of the chicken mitochondrial genomes: A novel gene order in higher vertebrates. J Mol Biol 212: 599-634
8. Desjardins P, Morais R (1991) Nucleotide sequence and evolution of coding and noncoding regions of a quail mitochondrial genome. J Mol Evo 32: 153-161
9. Ding P (1998) The distributions and systematics analysis of the long-tailed pheasants. Life Sciences Research 2: 122-131
10. Felsenstein J (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39: 783-791
11. Glaus KR, Zassenhaus HP, Fechheimer HS, Perlman PS (1980) Avian mtDNA: structure, organization and evolution. In "The Organization and Expression of the Mitochondrial Genome" Ed by AM Kroon and C Saccone, North Holland, Amsterdam, pp131-135
12. Hachisuka M 1953. On hybrids between the green and copper pheasant. Tori 13: 40-43
13. Han Z, Li F, Liu Y, Liu B (1999) Detection of intraspecific genetics relationships in Crested Ibises Nipponia Nippon through randomly amplified polymorphic DNA analysis. Journal of Yamashina Institute for Ornithology 31: 39-44
14. Hills DM, Bull JJ (1993) An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst Bio 42: 182-192
15. Howell N (1989) Evolutionary conservation of protein regions in the protonmotive cytochrome b and their possible roles in redox catalysis. J Mol Evol 29: 157-169
16. Huelsenbeck JP, Ronquist FR (2001) MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17: 754-755
17. Jeanmougin F, Thompson JD, Gouy M, Higgins DG, Gibson TJ (1998) Multiple sequence alignment with Clustal X. Trends Biochem Sci 23: 403-405
18. Johns GC, Avise JC (1998) A comparative summary of genetic distance in the vertebrate from the mitochondrial cytochrome b gene. Mol Biol Evol 15: 1481-1490
19. Johnsgard PA (1986) The Pheasants of the world. Oxford Univ. Press, Oxford
20. Johnsgard PA (1999) The Pheasants of the World. 5th ed, Oxford Univ. Press, Oxford
21. Kimball RT, Braun EL, Zwartjes PW, Crowe TM, Ligon JD (1999) A molecular phylogeny of the pheasants and partridges suggests that these lineages are not monophyletic. Mol Phylogenet Evol 11: 38-54
22. Klicka J, Zink RM (1997) The importance of recent ice ages in speciation: A failed paradigm. Science 277: 1666-1669
23. Klicka J, Fry AJ, Zink RM, Thompson CW (2001) A cytochrome-b perspective on Passerina bunting relationships. Auk 118: 611-621
24. Kornegay JR, Kocher TD, Williams LA, Wilson AC (1993) Pathways of lysozyme evolution inferred from the sequences of cytochrome b in birds. J Mol Evol 37: 367-379
25. Kumar S, Tamura K, Jakobsen IB, Nei M (2001) MEGA2: Molecular Evolutionary Genetics Analysis software. Bioinformatics 17 (12): 1244-1245
26. Munechika I, Nozawa K, Suzuki H (1999) Relationships of syrmaticus and phasianus by cyt b gene array comparison. Japanese Journal of Ornithology 47: 133-138
27. Nelson G, Platnick NI (1984) Biogeography. Carolina Biology Reader 119: 1-16
28. Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817-818
29. Randi E (1996) A mitochondrial cytochrome B phylogeny of the Alectoris Partridges. Mol Phylogenet Evol 6: 214-227
30. Randi E, Lucchini V (1998) Organization and evolution of the mitochondrial DNA control region in the avian genus Alectoris. J Mol Evol 47: 449-462
31. Randi E, Lucchini V, Prewitt TA, Kimball RT, Braun EL, Ligon JD (2000) Mitochondrial DNA phylogeny and speciation in the Tragopans. Auk 117: 1003-1015
32. Randi E, Lucchini V, Hennache A, Kimball RT, Braun EL, Ligon JD (2001) Evolution of the mitochondrial DNA control region and cytochrome b genes and the inference of phylogenetic relationships in the avian genus Lophura (Galliformes). Mol Phylogenet Evol 19: 187-201
33. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: A laboratory manual. 2nd ed, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
34. Sato A, O'hUigin C, Figueroa F, Grant PR, Grant BR, Tichy H, Klein J (1999) Phylogeny of Darwin's finches as revealed by mtDNA sequences. Proc Natl Acad Sci USA 96: 5101-5106
35. Shields GE, Wilson AC (1987) Calibration of mitochondrial DNA evolution in geese. J Mol Evol 24: 212-217
36. Swofford DL (1998) PAUP* : Phylogenetic Analysis Using Parsimony(* and other methods) Version 4. Sinauer Associates, Sunderland, Massachusetts
37. Taberlet P, Bouvet J (1991) A single plucked feather as a source of DNA for bird genetic studies. Auk 108: 959-960
38. The Editor Committee of Physical Geography of China (1978) Physical Geography of China. Sciences Press, Beijing
39. The Ornithological Society of Japan (1974) Checklist of Japanese Birds. 5th ed, Gakken, Tokyo
40. Tuinen MV, Dyke GJ (2004) Calibration of galliform molecular clocks using multiple fossils and genetic partitions. Mol Phylogenet Evol 30: 74-86
41. Yamashina Y (1976) Notes on the Japanese copper pheasant Phasianus soemmerringii. World Pheasant Association 1: 23-42
42. Zhan XJ, Zhang ZW, Wu AP, Tao YJ (2003) Phylogenetic relationships of monal pheasants Lophophorus inferred from sequnences of mitochondrial cytochrome b gene. Zoological Research 24: 337-342
43. Zhang DX, Hewitt GM (1996) Nuclear integrations: Challenges for mitochondrial DNA markers. Trends Ecol Evol 11: 247-251
44. Zhang Y, Zhang ZW, Zheng N (2003) The application of likelihood ratio tests and Bayesian inference in the molecular phylogeny of Phasianidae. Journal of Beijing Normal University (Natural Science) 39: 248-257
45. Zheng GM, Wang QS (1998) China Red Data Book of Endangered Animals (Aves). Sciences Press, Beijing