Phylogenetic Relationships of the Phasianidae Reveals Possible Non-Pheasant Taxa

Journal of Heredity

Volumn 94, Issue 6, 2003, Pages 472-489

  Bush, Krista L ^a   Strobeck, C ^a  

^a UNIVERSITY OF ALBERTA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOCHROME B;

ARTICLE; BIRD; CATREUS WALLICHII; CHRYSOLOPHUS PICTUS OBSCURUS; FOWL; GALLUS GALLUS; GENETIC VARIABILITY; MAXIMUM LIKELIHOOD METHOD; MONOPHYLY; NONHUMAN; NUCLEOTIDE SEQUENCE; PARSIMONY ANALYSIS; PHASIANIDAE; PHYLOGENY; POLYPECTRON BICALCARATUM; PRIORITY JOURNAL; PUCRASIA MACROLOPHA MACROLOPHA; SEQUENCE ANALYSIS; SPECIES DIFFERENCE; TAXONOMY;

ANIMALS; BASE SEQUENCE; BIRDS; CYTOCHROMES B; DNA, MITOCHONDRIAL; EVOLUTION, MOLECULAR; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

AVES; CATREUS WALLICHI; CHRYSOLOPHUS; CHRYSOLOPHUS PICTUS OBSCURUS; GALLIFORMES; GALLUS; GALLUS GALLUS; PAVO; PHASIANIDAE; POLYPLECTRON; POLYPLECTRON BICALCARATUM; PUCRASIA MACROLOPHA;

EID: 0347723772     PISSN: 00221503     EISSN: None     Source Type: Journal    
DOI: 10.1093/jhered/esg092     Document Type: Article

References (39)

1. Akishinomiya F, Miyake T, Takada M, Ohno S, and Kondo N, 1995. The genetic link between the Chinese bamboo partridge (Bambusicola Iboracica) and the chicken and junglefowls of the genus Gallus. Proc Natl Acad Sci USA 92:11053-11056.
2. Allen GA Jr, 1966. Ruffed pheasants: genus Chrysolophus (Lady Amherst, golden, dark-throated golden, yellow golden, & salmon golden). Game Bird Breed Pheasant Fanciers Avicult Gazette 1:6-13.
3. Amador AG, 1999. Galliformes: gallinaceous birds (visited July 14, 1999) http://www.il-st-acad-sci.org/kingdom/bird002.html.
4. Beebe W, 1990a. A monograph of the pheasants, vols. I and II. New York: Dover; 3-212.
5. Beebe, W, 1990b. A monograph of the pheasants, vols. III and IV. New York: Dover; 3-201.
6. Bensch S and Harlid A, 2000. Mitochondrial genomic rearrangements in songbirds. Mol Biol Evol 17:107-113.
7. Bergmann J, 1980. The peafowl of the world. Surrey, UK; Spur Publications; 29-48.
8. Birt TP, Friesen VL, Green JM, Montevecchi WA, and Davidson WS, 1992. Cytochrome-b sequence variation among parrots. Hereditas 117:67-72.
9. Bloomer P and Crowe TM, 1998. Francolin phylogenetics: molecular, morphobehavioral, and combined evidence. Mol Phylogenet Evol 9:236-254.
10. Convention on International Trade in Endangered Species of Wild Fauna and Flora (CITES), 2001. Wild Animal and Plant Protection and Regulation of International and Interprovincial Trade Act (visited January 6, 2001) http://www.cites.ec.gc.ca/control_12/index.html.
11. Crowe TM, Harley EH, Jakutowicz MB, Komen J, and Crowe AA, 1992. Implications of genetic, morphological, and behavioral variation in francolins (Phasianidae: Francolinus). Auk 109:24-42.
12. Delacour J, 1977. The pheasants of the world. Surrey, UK: Spur Publications.
13. Ghigi A, 1966. Ghigi's yellow golden pheastint (Chrysolophus pictus Intens), and salmon golden pheasant (Chrysolophus pictus infuscatus). Game Bird Breed Pheasant Fanciers Avicult Gazette 1:13-17.
14. Hillis DM and Bull JJ, 1993. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst Biol 42:182-192.
15. Irwin DM, Kocher TD, and Wilson AC, 1991. Evolution of the cytochrome b gene of mammals. J Mol Evol 32:128-144.
16. Johnsgard PA, 1986. The pheasants of the world. New York: Oxford University Press; 3-280.
17. Johnsgard PA, 1988. The quails, partridges, and francolins of the world. New York: Oxford University Press; 3-9, 111-121.
18. Jukes TH and Cantor CR, 1969. Evolution of protein molecules. In: Mammalian protein metabolism (Munro HN, ed). New York: Academic Press; 21-132.
19. Kimball RT, Braun EL, and Ligon JD, 1997. Resolution of the phylogenetic position of the Congo peafowl, Afroparo congensis: a biogeographic and evolutionary enigma. Proc R Soc Lond 264:1517-1523.
20. Kimball RT, Braun EL, Zwartjes PW, Crowe TM, and Ligon JD, 1999. A molecular phylogeny of the pheasants and partridges suggests that these lineages are not monophyletic. Mol Phylogenet Evol 11:38-54.
21. Kimball RT and Ligon JD, 1999. Evolution of avian plumage dichromatism from a proximate perspective. Am Nat 154:182-193.
22. Kornegay JR, Kocher TD, Williams LA, and Wilson AC, 1993. Pathways of lysosome evolution inferred front the sequences of cytochrome b in birds. J Mol Evol 37:367-379.
23. Lewis PO, 1999. Maximum likelihood as an alternative to parsimony for inferring phylogeny using nucleotide sequence data. In: Molecular systematics of plants II (Soltis DE, Soltis PS, and Doyle JJ, eds). Boston: Kluwer Academic; 132-163.
24. Milinkovitch MC, LeDuc RG, Adachi J, Farnir F, Georges M, and Hasegawa M, 1996. Effects of character weighting and species sampling on phylogeny reconstruction: a case study based on DNA sequence data in cetaceans. Genetics 144:1817-1833.
25. Mindell DP, Sorenson MD, and Dimcheff DE, 1998. Multiple independent origins of mitochondrial gene order in birds. Proc Natl Acad Sci USA 95:10693-10697.
26. Mindell DP, Sorenson MD, Huddleston CJ, Miranda HC, Knight A, Sawchuk SJ, and Yuri T, 1997. Phylogenetic relationships among and within select avian orders based on mitochondrial DNA. In: Avian molecular evolution and systematics (Mindell DP, ed). San Diego: Academic Press; 213-247.
27. Mindell DP and Thacker CE, 1996. Rates of molecular evolution: phylogenetic issues and applications. Annu Rev Ecol Syst 27:279-303.
28. Miyaki CY, Matioli SR, Burke T, and Wajntal A, 1998. Parrot evolution and paleogeographical events: mitochondrial DNA evidence. Mol Biol Evol 15:544-551.
29. Moore WS and DeFilippis VR, 1997. The window of taxonomic resolution for phylogenies based on mitochondrial cytochrome b. In: molecular evolution and systematics (Mindell DP, ed). San Diego: Academic Press; 83-113.
30. Nunn GB, Cooper J, Jouventin P, Robertson CJR, and Robertson GG, 1996. Evolutionary relationships among extant albatrosses (Procellariiformes: Diomedeidae) established from complete cytochrome b gene sequences. Auk 113:784-801.
31. QIAamp DNA Mini Kit and QIAamp DNA Blood Mini Kit Handbook, 1999. Blood and body fluid protocol, pp. 22-24; tissue protocol, pp. 28-31. QIAGEN (Valencia, California, U.S.A.).
32. Quinn TW, 1997. Molecular evolution of the mitochondrial genome. In: Avian molecular evolution and systematics (Mindell DP, ed). San Diego: Academic Press; 3-28.
33. Randi E, 1996. A mitochondrial cytochrome b phylogeny of the Alectoris partridges. Mol Phylogenet Evol 6:214-227.
34. Randi E, Fusco G, Lorensini R, and Crowe TM, 1991. Phylogenetic relationships and rates of alloenzyme evolution within the Phasianidae. Biochem Syst Ecol 19:213-221.
35. Randi E, Lucchini V, Armijo-Prewitt T, Kimball RT, Braun EL, and Ligon JD, 2000. Mitochondrial DNA phylogeny and speciation in the tragopans. Auk 117:1003-1015.
36. Randi E, Lucchini V, Hennache A, Kimball RT, Braun EL, and Ligon JD, 2001. Evolution of the mitochondrial DNA control region and cytochrome b genes and the inference of phylogenetic relationships in the avian genus Lophura (Galliformes). Mol Phylogenet Evol 19:187-201.
37. Sorenson MD and Quinn TW, 1998. Numts: a challenge for avian systematics and population biology. Auk 115:214-221.
38. Sorenson MD, Ast JC, Dimcheff DE, Yuri T, and Mindell DP, 1999. Primers for a PCR-based approach to mitochondrial genome sequencing in birds and other vertebrates. Mol Phylogenet Evol 12:105-114.
39. Van Tuinen M, Sibley CG, and Hedges SB, 2000. The early history of modern birds inferred from DNA sequences of nuclear and mitochondrial ribosomal genes. Mol Biol Evol 17:451-457.