Composite interval mapping reveals three QTL associated with pyloric caeca number in rainbow trout, Oncorhynchus mykiss

Aquaculture

Volumn 247, Issue 1-4, 2005, Pages 85-95

  Zimmerman, Anastasia M ^a,b   Wheeler, Paul A ^a   Ristow, Sandra S ^a   Thorgaard, Gary H ^a  

^a WASHINGTON STATE UNIVERSITY   (United States)

^b MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

AFLP; Genetic map; Oncorhynchus mykiss; Pyloric caeca; QTL; Rainbow trout

Indexed keywords

GENETIC ANALYSIS; SALMONID;

MYKISS; ONCORHYNCHUS MYKISS; PISCES; SALMONIDAE;

EID: 19744364729     PISSN: 00448486     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aquaculture.2005.02.029     Document Type: Conference Paper

References (48)

1. C. Basten, B. Weir, and Z. Zeng Zmap-a QTL cartographer C. Smith J. Gavora B. Benkel J. Chesnais W. Fairfull J. Gibson B. Kennedy E. Burnside Proceedings of the 5th world congress on genetics applied to livestock production: computing strategies and software, Guelph, Ontario, Canada vol. 22 1994 65 66
2. C. Basten, B. Weir, and Z. Zeng QTL cartographer, version 1.16. Department of statistics 2002 North Carolina State University Raleigh, NC
3. A. Bauermeister, B. Pirie, and J. Sargent An electron microscopic study of lipid absorption in the pyloric caeca of rainbow trout fed wax ester-rich zooplankton Cell Tissue Res. 200 1979 475 486
4. C. Beorlegui, A. Martinez, and P. Sesma Some peptide-like co-localizations in endocrine cells of the pyloric caeca and intestine of Oncorhynchus mykiss Cell Tissue Res. 269 1992 353 357
5. P. Bergot, J. Blanc, and A. Escaffre Relationship between number of pyloric caeca and growth in rainbow trout Aquaculture 22 1981 81 96
6. P. Bergot, J. Blanc, A. Escaffre, and H. Poisson Effect of selecting sires according to their number of pyloric caeca upon the growth of offspring in rainbow trout Aquaculture 25 1981 207 215
7. J. Blanc, B. Chevassus, and P. Bergot Genetic determination of pyloric caeca numbers in the brown and rainbow trout Ann. Genet. Sel. Anim. 11 1979 93 103
8. G. Boge, L. Lopez, and G. Peres An in vivo study of the role of pyloric caeca in water absorption in rainbow trout Comp. Biochem. Physiol. 91 1988 9 13
9. A. Bouchez, F. Hospital, M. Causse, A. Gallais, and A. Chaurcosset Marker assisted introgression of favorable alleles at QTL between many elite lines of maize Genetics 162 2002 1945 1959
10. C. Brondani, N. Rnagel, V. Brondani, and E. Ferreira QTL mapping and introgression of yield related traits from Oryza glumaepatula to cultivated rice (Oryza satira) using microsatellite markers Theor. Appl. Genet. 104 2002 1192 1203
11. R. Buddington, and J. Diamond Pyloric caeca of fish: a "new"absorptive organ Am. J. Physiol. 252 1987 65 76
12. H. Byun, P. Park, N. Sung, and S. Kim Purification and characterization of a serine proteinase from the tuna pyloric caeca J. Food Biochem. 26 2002 479 494
13. H. Chen, S. Wang, Y. Zing, C. Zu, P. Hayes, and Q. Zhang Comparative analyses of genomic locations and race specificities at loci for quantitative resistance to Pyricularia grisea in rice and barley Proc. Natl. Acad. Sci. USA 100 2003 2544 2599
14. G. Choubert, J. Noue, and J. Blanc Apparent digestibility of canthaxanthin in rainbow trout: effect of dietary fat level, antibiotics and number of pyloric caeca Aquaculture 99 1991 323 329
15. G. Churchill, and R. Doerge Empirical threshold values for quantitative trait mapping Genetics 138 1996 963 971
16. M. Coimbra, K. Kobayshi, S. Koretsugu, O. Hasegawa, K. Ohara, A. Ozaki, T. Sakamoto, K. Naruse, and N. Okamoto A genetic linkage map of the Japanese flounder, Paralichthys olivaceus Aquaculture 220 2003 203 218
17. L. Dimes, N. Haard, F. Dong, B. Rasco, I. Forster, W. Fairgrieve, R. Arndt, R. Hardy, F. Barrows, and D. Higgs Estimation of protein digestibility: II. In vitro assay of protein in salmonid feeds Comp. Biochem. Physiol. 108 1994 363 370
18. D Falconer, and T. Mackay Quantitative genetics 4th ed. 1996 Longman Inc. New York pp. 464
19. S. Harpaz, and Z. Uni Activity of intestinal mucosal brush border membrane enzymes in relation to the feeding habits of three aquacultural fish species Comp. Biochem. Physiol. 124 1999 155 160
20. M. Kristjansson Purification and characterization of trypsin from pyloric caeca of rainbow trout (Oncorhynchus mykiss) J. Agric. Food Chem. 39 1991 1738 1742
21. E. Lander, and D. Botstein Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps Genetics 121 1989 185 199
22. E. Lander, P. Green, J. Abrahamson, A. Barlow, and M. Daly MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations Genomics 1 1987 174 181
23. G. Marcotte, and J. De La Noue In vitro intestinal absorption of glycine and l-alanine by rainbow trout Comp. Biochem. Physiol. 79 1984 209 213
24. K. Nakamura, A. Ozaki, T. Akutsu, K. Iwai, T. Sakamoto, G. Yoshizaki, and N. Okamoto Genetic mapping of the dominant albino locus in rainbow trout (Oncorhynchus mykiss) Mol. Genet. Genomics 265 2001 687 693
25. K. Nichols, P. Wheeler, and G. Thorgaard Quantitative trait loci analyses for meristic traits in Oncorhynchus mykiss Environ. Biol. Fishes 69 2003 317 331
26. K. Nichols, W. Young, R. Danzmann, B. Robison, C. Rexroad, M. Noakes, R. Phillips, P. Bentzen, I. Spies, K. Knudsen, F. Allendorf, B. Cunningham, J. Brunelli, H. Zhang, S. Ristow, R. Drew, K. Brown, P. Wheeler, and G. Thorgaard A consolidated linkage map for rainbow trout (Oncorhynchus mykiss) Anim. Genet. 34 2003 102 115
27. T. Northcote Relationship between number of pyloric caeca and length of juvenile rainbow trout Copeia 3 1960 248 250
28. J. Olli, K. Hjelmeland, and A. Krogdahl Soybean trypsin inhibitors in diets for Atlantic salmon (Salmo salar): effects on nutrient digestibilites and trypsin in pyloric caeca homogenate and intestinal content Comp. Biochem. Physiol. 4 1994 923 928
29. A. Ozaki, T. Sakamoto, S. Khoo, K. Nakamura, M. Coimbra, T. Akutsu, and N. Okamoto Quantitative trait loci (QTL) associated with resistance/ susceptibility to infectious pancreatic necrosis virus (IPNV) in rainbow trout (Oncorhynchus mykiss) Mol. Genet. Genom. 26 2001 23 31
30. J. Parsons, and G. Thorgaard Production of androgenetic diploid rainbow trout J. Heredity 76 1985 177 181
31. A. Pavlisko, A. Rial, and Z. Coppes Characterization of trypsin purified from the pyloric caeca of the southwest Atlantic white croaker Micropogonias furnieri J. Food Biochem. 21 1997 383 400
32. A. Pavlisko, A. Rial, and Z. Coppes Purification and characterization of a protease from pyloric caeca of menhaden (Brevoortia spp) and mullet (Mugil spp) from southwest Atlantic region J. Food Biochem. 23 1999 225 241
33. G. Perry, R. Danzmann, M. Ferguson, and J. Gibson Quantitative trait loci for upper thermal tolerance in outbred strains of rainbow trout (Oncorhynchus mykiss) Heredity 86 2001 333 341
34. R. Pruitt, J. Bowman, and U. Grossniklaus Plant genetics: a decade of integration Nat. Genet. 33 2003 294 304
35. A. Raae, and B. Walther Purification and characterization of chymotrypsin, trypsin and elastase like proteinases from cod (Gadus morhua) Comp. Biochem. Physiol., B 93 1989 317 324
36. B. Robison, P. Wheeler, K. Sundin, P. Sikka, and G. Thorgaard Composite interval mapping reveals a major locus influencing embryonic development rate in rainbow trout (Oncorhynchus mykiss) J. Heredity 92 2001 16 22
37. M. Rust Nutritional physiology: pyloric caeca J. Halver R. Hardy Fish nutrition 3rd edition 2002 Academic Press
38. T. Sakamoto, R. Danzmann, N. Okamoto, M. Ferguson, and P. Ihsen Linkage analysis of quantitative trait loci associated with spawning time in rainbow trout (Oncorhynchus mykiss) Aquaculture 173 1999 33 43
39. T. Sakamoto, R. Danzmann, K. Gharbi, P. Howard, A. Ozaki, S. Khoo, R. Woram, N. Okamoto, M. Ferguson, L. Holm, R. Guyomard, and B. Hoyheim A microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) characterized by large sex-specific differences in recombination rates Genetics 155 2000 1331 1345
40. P. Scheerer, G. Thorgaard, G. Allendorf, and K. Knudsen Androgenetic rainbow trout produced from inbred and outbred sperm sources show similar survival Aquaculture 57 1986 289 298
41. A. Sewalem, D. Morrice, A. Law, D. Windsor, C. Haley, C. Ikeobi, D. Bust, and P. Hocking Mapping of quantitative trait loci for body weight at three, six and nine weeks of age in a broiler layer cross Poult. Sci. 81 2002 177 181
42. M. Sire, C. Lutton, and J. Vernier New views on intestinal absorption of lipids in teleostean fishes: an ultrastructural and biochemical study in the rainbow trout J. Lipid Res. 22 1981 81 94
43. E. Toyota, S. Kuninaga, H. Sekizaki, K. Itoh, K. Tanizawa, and M. James Crystal structure and nucleotide sequence of an anionic trypsin from chum salmon (Oncorhynchus keta) in comparison with Atlantic salmon (Salmo salar) and bovine trypsin J. Mol. Biol. 324 2002 391 397
44. O. Ulla, and T. Gjedren Number and length of pyloric caeca and their relationship to fat and protein digestibility in rainbow trout Aquaculture 47 1985 105 111
45. P. Vos, R. Hogers, M. Bleeker, M. Reijans, T. Vandelee, M. Hornes, A. Frijters, J. Pot, J. Peleman, M. Kuiper, and M. Zabeau AFLP: a new technique for DNA fingerprinting Nucleic Acids Res. 23 1995 4407 4414
46. W. Young, P. Wheeler, V. Coryell, P. Keim, and G. Thorgaard A detailed genetic linkage map of rainbow trout produced using doubled haploids Genetics 148 1998 839 850
47. Z. Zeng Precision mapping of quantitative trait loci Genetics 136 1994 1457 1514
48. A. Zimmerman, J. Evenhuis, G. Thorgaard, and S. Ristow A single major chromosomal region controls natural killer cell-like activity in rainbow trout Immunogenetics 55 2004 825 835