메뉴 건너뛰기




Volumn 21, Issue 10, 2005, Pages 2301-2308

Sorting points into neighborhoods (SPIN): Data analysis and visualization by ordering distance matrices

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOLOGICAL MODEL; CANCER GROWTH; CLUSTER ANALYSIS; COLON CANCER; COMPUTER PROGRAM; DATA ANALYSIS; GENE CLUSTER; GENE EXPRESSION; GENE IDENTIFICATION; GENETIC ALGORITHM; GENETIC ANALYSIS; GENETIC ASSOCIATION; GENETIC HETEROGENEITY; HUMAN; METASTASIS; METHODOLOGY; NONHUMAN; PRIORITY JOURNAL; STATISTICAL ANALYSIS; TISSUE DISTRIBUTION;

EID: 19544387813     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti329     Document Type: Article
Times cited : (122)

References (25)
  • 1
    • 0033536012 scopus 로고    scopus 로고
    • Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays
    • Alon,U. et al. (1999) Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays. Proc. Natl Acad. Sci. USA, 96, 6745-6750.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 6745-6750
    • Alon, U.1
  • 2
    • 0034730140 scopus 로고    scopus 로고
    • Singular value decomposition for genome-wide expression data processing and modeling
    • Alter,O. et al. (2000) Singular value decomposition for genome-wide expression data processing and modeling. Proc. Natl Acad. Sci. USA, 97, 10101-10106.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 10101-10106
    • Alter, O.1
  • 3
    • 0003126516 scopus 로고    scopus 로고
    • Fast optimal leaf ordering for hierarchical clustering
    • Bar-Joseph,Z. et al. (2001) Fast optimal leaf ordering for hierarchical clustering. Bioinformatics, 17, S22-S29.
    • (2001) Bioinformatics , vol.17
    • Bar-Joseph, Z.1
  • 4
    • 0037249834 scopus 로고    scopus 로고
    • CSE11/CAS: Its role in proliferation and apoptosis
    • Behrens,P. et al. (2003) CSE11/CAS: its role in proliferation and apoptosis. Apoptosis, 8, 39-44.
    • (2003) Apoptosis , vol.8 , pp. 39-44
    • Behrens, P.1
  • 5
    • 0242690489 scopus 로고    scopus 로고
    • Discovering local structure in gene expression data: The order-preserving submatrix problem
    • Ben-Dor,A. et al. (2003) Discovering local structure in gene expression data: The order-preserving submatrix problem. J. Comput. Biol., 10, 373-384.
    • (2003) J. Comput. Biol. , vol.10 , pp. 373-384
    • Ben-Dor, A.1
  • 6
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini,Y. and Hochberg,Y. (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc., 57, 289-300.
    • (1995) J. R. Stat. Soc. , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 7
    • 0036681990 scopus 로고    scopus 로고
    • Gene expression in colorectal cancer
    • Birkenkamp-Demtroder,K. et al. (2002) Gene expression in colorectal cancer. Cancer Res., 62, 4352-4363.
    • (2002) Cancer Res. , vol.62 , pp. 4352-4363
    • Birkenkamp-Demtroder, K.1
  • 9
    • 19544390562 scopus 로고
    • An algorithm for the solution of the assignment problem
    • Dinic,E.A. and Kronrod,M.A. (1969) An algorithm for the solution of the assignment problem. Soviet Math. Dokl., 10, 1324-1326.
    • (1969) Soviet Math. Dokl. , vol.10 , pp. 1324-1326
    • Dinic, E.A.1    Kronrod, M.A.2
  • 10
    • 0036489046 scopus 로고    scopus 로고
    • Comparison of discrimination methods for the classification of tumors using gene expression data
    • Dudoit,S. et al. (2002) Comparison of discrimination methods for the classification of tumors using gene expression data. J. Am. Stat. Assoc., 97, 77-87.
    • (2002) J. Am. Stat. Assoc. , vol.97 , pp. 77-87
    • Dudoit, S.1
  • 11
    • 0032441150 scopus 로고    scopus 로고
    • Cluster analysis and display of genome-wide expression patterns
    • Eisen,M. et al. (1998) Cluster analysis and display of genome-wide expression patterns. Proc. Natl Acad. Sci. USA, 95, 14863-14868.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 14863-14868
    • Eisen, M.1
  • 12
    • 0034710876 scopus 로고    scopus 로고
    • Coupled two-way clustering analysis of gene microarray data
    • Getz,G. et al. (2000) Coupled two-way clustering analysis of gene microarray data. Proc. Natl Acad. Sci. USA, 97, 12079-12084.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 12079-12084
    • Getz, G.1
  • 13
    • 4444305034 scopus 로고    scopus 로고
    • Mixture models for assessing differential expression in complex tissues using microarray data
    • Ghosh,D. (2004) Mixture models for assessing differential expression in complex tissues using microarray data. Bioinformatics, 20, 1663-1669.
    • (2004) Bioinformatics , vol.20 , pp. 1663-1669
    • Ghosh, D.1
  • 14
    • 0002384937 scopus 로고
    • Assignment problems and the location of economic activities
    • Koopmans,T. and Beckmann,M. (1957) Assignment problems and the location of economic activities. Econometrica, 25, 53-76.
    • (1957) Econometrica , vol.25 , pp. 53-76
    • Koopmans, T.1    Beckmann, M.2
  • 15
    • 2442638940 scopus 로고    scopus 로고
    • Genesωork: An efficient algorithm for pattern discovery and multivariate feature selection in gene expression data
    • Lepre,J. et al. (2004) Genesωork: an efficient algorithm for pattern discovery and multivariate feature selection in gene expression data. Bioinformatics, 20, 1033-1044.
    • (2004) Bioinformatics , vol.20 , pp. 1033-1044
    • Lepre, J.1
  • 16
    • 0036166753 scopus 로고    scopus 로고
    • Linear modes of gene expression determined by independent component analysis
    • Liebermeister,W. (2002) Linear modes of gene expression determined by independent component analysis. Bioinformatics, 18, 51-60.
    • (2002) Bioinformatics , vol.18 , pp. 51-60
    • Liebermeister, W.1
  • 17
    • 0033576617 scopus 로고    scopus 로고
    • Eplin, epithelial protein lost in neoplasm
    • Maul,R.S. and Chang,D.D. (1999) Eplin, epithelial protein lost in neoplasm. Oncogene, 18, 7838-7841.
    • (1999) Oncogene , vol.18 , pp. 7838-7841
    • Maul, R.S.1    Chang, D.D.2
  • 18
    • 0035300437 scopus 로고    scopus 로고
    • Transcriptional gene expression profiles of colorectal adenoma, adenocarcinoma, and normal tissue examined by oligonucleotide arrays
    • Notterman,D.A. et al. (2001) Transcriptional gene expression profiles of colorectal adenoma, adenocarcinoma, and normal tissue examined by oligonucleotide arrays. Cancer Res., 61, 3124-3130.
    • (2001) Cancer Res. , vol.61 , pp. 3124-3130
    • Notterman, D.A.1
  • 19
    • 0035999977 scopus 로고    scopus 로고
    • A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments
    • Pan,W. (2002) A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments. Bioinformatics, 18, 546-554.
    • (2002) Bioinformatics , vol.18 , pp. 546-554
    • Pan, W.1
  • 20
    • 19044391501 scopus 로고
    • The euclidean traveling salesman problem is NP-complete
    • Papadimitriou,C.H. (1977) The euclidean traveling salesman problem is NP-complete. Theoret. Comput. Sci., 4, 237-244.
    • (1977) Theoret. Comput. Sci. , vol.4 , pp. 237-244
    • Papadimitriou, C.H.1
  • 21
    • 0036171569 scopus 로고    scopus 로고
    • Silence of chromosomal amplifications in colon cancer
    • Platzer,P. et al. (2002) Silence of chromosomal amplifications in colon cancer. Cancer Res., 62, 1134-1138.
    • (2002) Cancer Res. , vol.62 , pp. 1134-1138
    • Platzer, P.1
  • 22
    • 0347201147 scopus 로고    scopus 로고
    • Multiclass cancer diagnosis using tumor gene expression signatures
    • Ramaswamy,S. et al. (2001) Multiclass cancer diagnosis using tumor gene expression signatures. Proc. Natl Acad. Sci. USA, 98, 15149-15154.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 15149-15154
    • Ramaswamy, S.1
  • 23
    • 0038271734 scopus 로고    scopus 로고
    • Expression profiles of acute lymphoblastic, and myeloblastic leukemias with all-1 rearrangements
    • Rozovskaia,T. et al. (2003) Expression profiles of acute lymphoblastic, and myeloblastic leukemias with all-1 rearrangements. Proc. Natl Acad. Sci. USA, 100, 7853-7858.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 7853-7858
    • Rozovskaia, T.1
  • 24
    • 0031742022 scopus 로고    scopus 로고
    • Comprehensive identification of cell cycle-regulated genes of the yeast saccharomyces cerevisiae by microarray hybridization
    • Spellman,P.T. et al. (1998) Comprehensive identification of cell cycle-regulated genes of the yeast saccharomyces cerevisiae by microarray hybridization. Mol. Biol. Cell, 9, 3273-3297.
    • (1998) Mol. Biol. Cell , vol.9 , pp. 3273-3297
    • Spellman, P.T.1
  • 25
    • 33644522523 scopus 로고    scopus 로고
    • A novel mathematical approach to analyzing gene expression data: Results from an international colon cancer consortium
    • Tsafrir,D. et al. (2004) A novel mathematical approach to analyzing gene expression data: results from an international colon cancer consortium. In Proceedings of AACR 2004.
    • (2004) Proceedings of AACR 2004
    • Tsafrir, D.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.