Evidence that Na+-pumping occurs through the D-channel in Vitreoscilla cytochrome bo

Biochemical and Biophysical Research Communications

Volumn 332, Issue 2, 2005, Pages 332-338

  Kim, Seong K ^a,b   Stark, Benjamin C ^a   Webster, Dale A ^a  

^a Illinois Institute of Technology   (United States)

^b WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

Cytochrome bo; Na+ pumping; NADH dehydrogenase; Ubiquinol oxidase; Vitreoscilla

Indexed keywords

ADENOSINE TRIPHOSPHATASE (POTASSIUM SODIUM); CARBON MONOXIDE; CYTOCHROME; CYTOCHROME C OXIDASE; POTASSIUM CHANNEL; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE;

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENE; BINDING AFFINITY; CONTROLLED STUDY; ENZYME ACTIVITY; ESCHERICHIA COLI; GENETIC CODE; MUTATION; NONHUMAN; OPERON; PRIORITY JOURNAL; PROTEIN FUNCTION; PROTON TRANSPORT; VITREOSCILLA; WILD TYPE;

AMINO ACID SUBSTITUTION; BIOLOGICAL TRANSPORT, ACTIVE; ELECTRON TRANSPORT COMPLEX IV; ESCHERICHIA COLI; MUTAGENESIS, SITE-DIRECTED; NA(+)-K(+)-EXCHANGING ATPASE; RECOMBINANT PROTEINS; SODIUM; STRUCTURE-ACTIVITY RELATIONSHIP; TRANSFORMATION, BACTERIAL; VITREOSCILLA;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; VITREOSCILLA;

EID: 19444379915     PISSN: 0006291X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbrc.2005.04.133     Document Type: Article

References (34)

1. C.D. Georgiou, P. Cokic, K. Carter, D.A. Webster, and R.B. Gennis Relationships between membrane-bound cytochrome o from Vitreoscilla and that of Escherichia coli Biochim. Biophys. Acta 933 1988 179 183
2. K.W. Hwang, S.K. Kim, K.J. Kim, Y.T. Chung, B.C. Stark, and D.A. Webster Isolation, sequencing, and characterization of the cytochrome bo operon from Vitreoscilla DNA Seq. 14 2003 53 59
3. 562-o complex, a terminal oxidase of Escherichia coli K12 J. Biol. Chem. 257 1982 7933 7935
4. A. Puustinen, M. Finel, M. Virrki, and M. Wikström Cytochrome bo is a proton pump in Paracoccus denitrificans and Escherichia coli FEBS Lett. 249 1989 163 167
5. 3-type family of cytochrome c oxidases J. Biol. Chem. 265 1990 11185 11192
6. K. Saiki, T. Mogi, and Y. Anraku Heme o biosynthesis in Escherichia coli: the cyoE gene in the cytochrome bo operon encodes a protoheme IX farnesyltransferase Biochem. Biophys. Res. Commun. 189 1992 1491 1497
7. B.J.S. Efiok, and D.A. Webster A cytochrome that can pump sodium ion Biochem. Biophys. Res. Commun. 173 1990 370 375
8. + pumping and orientation in synthetic vesicles Biochemistry 35 1996 11895 11900
9. K.J. Kim, P.Y. Chi, K.W. Hwang, B.C. Stark, and D.A. Webster Study of cytochrome bo function in Vitreoscilla using a cyo (-) knockout mutant J. Biochem. 128 2000 49 55
10. R.B. Gennis Multiple proton-conducting pathways in cytochrome oxidase and a proposed role for the active-site tyrosine Biochim. Biophys. Acta 1365 1998 241 248
11. S. Yoshikawa, K. Shinzawa-Itoh, R. Nakashima, R. Yaono, E. Yamashita, N. Inoue, M. Yao, M.J. Fei, C.P. Libeu, and T. Mizushima Redox-coupled crystal structural changes in bovine heart cytochrome c oxidase Science 280 1998 1723 1729
12. U. Pfitzner, A. Odenwald, T. Ostermann, L. Wengard, B. Ludwig, and O.M.H. Richter Cytochrome c oxidase (heme aa3) from Paracoccus denitrificans: analysis of mutations in putative proton channels of subunit I J. Biomemb. Bioenerg. 30 1998 89 93
13. V. Sack, Y. Marantz, A. Aagaard, S. Checover, E. Nachliel, and M. Gutman The dynamic feature of the proton collecting antenna of a protein surface Biochim. Biophys. Acta 1365 1998 232 240
14. S. Riistama, G. Hummer, A. Puustinen, R.B. Dyer, W. Woodruff, and M. Wikström Bound water in the proton translocation mechanism of the haem-copper oxidase FEBS Lett. 414 1997 275 280
15. R. Pomes, G. Hummer, and M. Wikström Structure and dynamics of a proton shuttle in cytochrome c oxidase Biochim. Biophys. Acta 1365 1998 255 260
16. I. Hofacker, and K. Schlten Oxygen and proton pathways in cytochrome c oxidase Proteins 30 1998 100 107
17. 3 ubiquinol oxidase of Escherichia coli: second-site mutations in subunit I that restore proton pumping in the mutant aspartic acid 135 to asparagine Biochemistry 34 1995 4428 4433
18. C. Ostermeier, A. Harrenga, U. Ermler, and H. Michel Structure at 2.7 Å resolution of the Paracoccus denitrificans two-subunit cytochrome c oxidase complexed with an antibody Fv fragment Proc. Natl. Acad. Sci. USA 94 1997 10547 10553
19. D.A. Proshyakov, M.A. Pressler, and G.T. Babcock Dioxygen activation and bond cleavage by mixed-valence cytochrome c oxidase Proc. Natl. Acad. Sci. USA 95 1998 8020 8025
20. M. Wikström, A. Jasaitis, C. Backgren, A. Puustinen, and M.I. Verkhovsky The role of the D- and K-pathways of proton transfer in the function of the haem-copper oxidase Biochim. Biophys. Acta 1459 2000 514 520
21. M. Kawasaki, T. Mogi, and Y. Anraku Substitutions of charged amino acid residues conserved in subunit I perturb the redox metal centers of the Escherichia coli bo-type ubiquinol oxidase J. Biochem. 122 1997 422 429
22. H. Michel The mechanism of proton pumping by cytochrome c oxidase Proc. Natl. Acad. Sci. USA 95 1998 12819 12824
23. S. Junemann, B. Meunier, R.B. Gennis, and P.R. Rich Effects of mutation of the conserved lysine-362 in cytochrome c oxidase from Rhodobacter sphaeroides Biochemistry 36 1997 14456 14464
24. G.S. Stewart, S. Lubinsky-Mink, C.G. Jackson, A. Cassel, and J. Kuhn pHG165: a pBR322 copy number derivative of pUC18 for cloning and expression Plasmid 15 1986 172 181
25. J. Braman, C. Papworth, and A. Greener Site-directed mutagenesis using double-stranded plasmid DNA templates Methods Mol. Biol. 57 1996 31 44
26. C.D. Georgiou, and D.A. Webster Purification and partial characterization of the membrane-bound cytochrome o (561, 564) from Vitreoscilla Biochemistry 26 1987 6521 6526
27. 3 is involved in proton translocation Proc. Natl. Acad. Sci. USA 94 1997 10128 10131
28. B center FEBS Lett. 374 1995 371 374
29. B.J.S. Efiok, and D.A. Webster Sodium-coupled ATP synthesis in the bacterium Vitreoscilla Arch. Biochem. Biophys. 292 1992 102 106
30. M. Lübben, B. Kolmerer, and M. Saraste An archaebacterial terminal oxidase combines core structures of two mitochondrial respiratory complexes EMBO J. 11 1992 805 812
31. 3 of Escherichia coli Biochemistry 34 1995 15633 15637
32. J.E. Morgan, M.I. Verkhovsky, and M. Wikström Observation and assignment of peroxy and ferryl intermediates in the reduction of dioxygen to water by cytochrome c oxidase Biochemistry 35 1996 12235 12240
33. J.P. Hosler, J.P. Shapleigh, D.M. Mitchell, Y.K. Kim, M.A. Pressler, C.D. Georgiou, G.T. Babcock, J.O. Alben, S. Ferguson-Miller, and R.B. Gennis Polar residues in helix VIII of subunit I of cytochrome c oxidase influence the activity and the structure of the active site Biochemistry 35 1996 10776 10783
34. B ligand Biochemistry 33 1994 13013 13021