Efficient use of synchrotron radiation for macromolecular diffraction data collection

Progress in Biophysics and Molecular Biology

Volumn 89, Issue 2 SPEC. ISS., 2005, Pages 153-172

  Dauter, Zbigniew ^a  

^a BROOKHAVEN NATIONAL LABORATORY   (United States)

Author keywords

Diffraction data collection; Macromolecular crystals; Synchrotron radiation

Indexed keywords

EID: 19444362576     PISSN: 00796107     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.pbiomolbio.2004.09.004     Document Type: Review

References (22)

1. U.W. Arndt, and A.J. Wonacott The Rotation Method in Crystallography 1977 North Holland Amsterdam
2. S. Banumathi, P.H. Zwart, U.A. Ramagopal, M. Dauter, and Z. Dauter Structural effects of radiation damage and its potential for phasing Acta Crystallogr. D 60 2004 1085 1093
3. Blake, C.C.F., Phillips, D.C., 1962. Biological effects of ionizing radiation at the molecular level. In: Proceedings of symposium held by the International Atomic Energy Agency, Brno, Czechoslovakia, 2-6 July 1962. IAEA, Vienna. pp. 183-191.
4. F.H.C. Crick, and B.S. Magdoff The theory of the method of isomorphous replacement for protein crystals Acta Crystallogr 9 1956 901 908
5. Z. Dauter Data collection strategy Method Enzymol. 276 1997 326 344
6. Z. Dauter Data-collection strategies Acta Crystallogr. D 55 1999 1703 1717
7. Dauter, Z., Wilson, K.S., 2001. Principles of monochromatic data collection. International Tables of Crystallography. vol. F. Kluwer Academic Publishers, Dordrecht, pp. 177-195.
8. Z. Dauter, M. Dauter, and E. Dodson Jolly SAD Acta Crystallogr. D 58 2002 494 506
9. K. Diederichs, and P.A. Karplus Improved R-factor for diffraction data analysis in macromolecular crystallography Nat. Struct. Biol. 4 1997 269 275
10. K. Diederichs, S. McSweeney, and R.G.B. Ravelli Zero-dose extrapolation as part of macromolecular synchrotron data reduction Acta Crystallogr. D 59 2003 903 909
11. G.S. French, and K.S. Wilson On the treatment of negative intensity observations Acta Crystallogr. A 34 1978 517 525
12. E. Garman Cool data quantity and quality Acta Crystallogr. D 55 1999 1641 1653
13. W.A. Hendrickson Radiation damage in protein crystallography J. Mol. Biol. 106 1976 889 893
14. W.A. Hendrickson, and C.M. Ogata Phase determination from multiwavelength anomalous diffraction measurements Method Enzymol. 276 1997 494 523
15. E. Mitchell, P. Kuhn, and E. Garman Demystifying the synchrotron trip a first time user guide Structure 7 1999 R111 R121
16. A.N. Popov, and G.P. Bourenkov Choice of data-collection parameters based on statistic modelling Acta Crystallogr. D 59 2003 1145 1153
17. R.G.B. Ravelli, H.K. Schrøder-Leiros, B. Pan, M. Caffrey, and S. McSweeney Specific radiation damage can be used to solve macromolecular crystal structures Structure 11 2003 217 224
18. L.M. Rice, T.N. Earnest, and A.T. Bunger Single-wavelength anomalous phasing revisited Acta Crystallogr. D 56 2000 1413 1420
19. T.R. Schneider, and G.M. Sheldrick Substructure solution with SHELXD Acta Crystallogr. D 58 2002 1772 1779
20. G.M. Sheldrick, and T.R. Schneider SHELXL high-resolution refinement Method Enzymol. 277 1997 319 343
21. M. Weik, R.B.G. Ravelli, G. Kryger, S. McSweeney, M.L. Raves, M. Harel, P. Gros, I. Silman, J. Kroon, and J.L. Sussman Specific chemical and structural damage to proteins produced by synchrotron radiation Proc. Natl. Acad. Sci. USA 97 2000 623 628
22. M.S. Weiss, and R. Hilgenfeld On the use of merging R factor as a quality indicator for X-ray data J. Appl. Crystallogr. 30 1997 203 205