메뉴 건너뛰기




Volumn 86, Issue 4, 2004, Pages 1922-1945

A Nonlinear Discrete Dynamical Model for Transcriptional Regulation: Construction and Properties

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHEMICAL REACTION KINETICS; EPIGENETICS; HOMEOSTASIS; MATHEMATICAL MODEL; MOLECULAR DYNAMICS; NONLINEAR SYSTEM; PROTEIN DNA BINDING; TRANSCRIPTION REGULATION;

EID: 1942487792     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(04)74257-5     Document Type: Article
Times cited : (41)

References (78)
  • 1
    • 0033677274 scopus 로고    scopus 로고
    • Algorithms for identifying Boolean networks and related biological networks based on matrix multiplication and fingerprint function
    • Akutsu, T., S. Miyano, and S. Kuhara. 2000a. Algorithms for identifying Boolean networks and related biological networks based on matrix multiplication and fingerprint function. J. Comput. Biol. 7:331-343.
    • (2000) J. Comput. Biol. , vol.7 , pp. 331-343
    • Akutsu, T.1    Miyano, S.2    Kuhara, S.3
  • 2
    • 0033737840 scopus 로고    scopus 로고
    • Inferring qualitative relations in genetic networks and metabolic pathways
    • Akutsu, T., S. Miyano, and S. Kuhara. 2000b. Inferring qualitative relations in genetic networks and metabolic pathways. Bioinformatics. 16: 727-734.
    • (2000) Bioinformatics , vol.16 , pp. 727-734
    • Akutsu, T.1    Miyano, S.2    Kuhara, S.3
  • 4
    • 0030848624 scopus 로고    scopus 로고
    • A test case of correlation metric construction of a reaction pathway from measurments
    • Arkin, A., P. Shen, and J. Ross. 1997. A test case of correlation metric construction of a reaction pathway from measurments. Science. 277:1275-1279.
    • (1997) Science , vol.277 , pp. 1275-1279
    • Arkin, A.1    Shen, P.2    Ross, J.3
  • 5
    • 0031879114 scopus 로고    scopus 로고
    • Stochastic kinetic analysis of developmental pathway bifurcation in phage λ-infected Escherichia coli cells
    • Arkin, A., J. Ross, and H. H. McAdams. 1998. Stochastic kinetic analysis of developmental pathway bifurcation in phage λ-infected Escherichia coli cells. Genetics. 149:1633-1648.
    • (1998) Genetics , vol.149 , pp. 1633-1648
    • Arkin, A.1    Ross, J.2    McAdams, H.H.3
  • 6
    • 0030986188 scopus 로고    scopus 로고
    • The hardwiring of development: Organization and function of genomic regulatory systems
    • Amone, M. I., and E. H. Davidson. 1997. The hardwiring of development: organization and function of genomic regulatory systems. Development. 124:1851-1864.
    • (1997) Development , vol.124 , pp. 1851-1864
    • Amone, M.I.1    Davidson, E.H.2
  • 7
    • 0030574422 scopus 로고    scopus 로고
    • Counting and classifying attractors in high dimensional dynamical systems
    • Bagley, R. J., and L. Glass. 1996. Counting and classifying attractors in high dimensional dynamical systems. J. Theor. Biol. 183:269-284.
    • (1996) J. Theor. Biol. , vol.183 , pp. 269-284
    • Bagley, R.J.1    Glass, L.2
  • 10
    • 0036607524 scopus 로고    scopus 로고
    • Modeling DNA sequence-based cis-regulatory gene networks
    • Bolouri, H., and E. H. Davidson. 2002. Modeling DNA sequence-based cis-regulatory gene networks. Dev. Biol. 246:2-13.
    • (2002) Dev. Biol. , vol.246 , pp. 2-13
    • Bolouri, H.1    Davidson, E.H.2
  • 11
    • 84984932472 scopus 로고    scopus 로고
    • Exploring the new world of the genome with DNA microarrays
    • Brown, P. O., and D. Botstein. 1999. Exploring the new world of the genome with DNA microarrays. Nat. Genet. 21:33-37.
    • (1999) Nat. Genet. , vol.21 , pp. 33-37
    • Brown, P.O.1    Botstein, D.2
  • 12
    • 0031280034 scopus 로고    scopus 로고
    • Controlling messenger RNA stability in bacteria: Strategies for engineering gene expression
    • Carrier, T. A., and J. D. Keasling. 1997. Controlling messenger RNA stability in bacteria: strategies for engineering gene expression. Biotechnol. Prog. 13:699-708.
    • (1997) Biotechnol. Prog. , vol.13 , pp. 699-708
    • Carrier, T.A.1    Keasling, J.D.2
  • 13
    • 0642281348 scopus 로고    scopus 로고
    • Correlating overrepresented upstream motifs to gene expression: A computational approach to regulatory element discovery in eukaryotes
    • Caselle, M., F. D. Cunto, and P. Provero. 2002. Correlating overrepresented upstream motifs to gene expression: a computational approach to regulatory element discovery in eukaryotes. BMC Bioinformatics. 3:7.
    • (2002) BMC Bioinformatics , vol.3 , pp. 7
    • Caselle, M.1    Cunto, F.D.2    Provero, P.3
  • 14
    • 0032611513 scopus 로고    scopus 로고
    • Modeling gene expression with differential equations
    • R. B. Altman, K. Lauderdale, A. K. Dunker, L. Hunter, and T. E. Klein, editors. World Scientific, Singapore
    • Chen, T., H. L. He, and G. M. Church. 1999. Modeling gene expression with differential equations. In Proceedings of the Pacific Symposium on Biocomputing. R. B. Altman, K. Lauderdale, A. K. Dunker, L. Hunter, and T. E. Klein, editors. World Scientific, Singapore. 4:29-40.
    • (1999) Proceedings of the Pacific Symposium on Biocomputing , vol.4 , pp. 29-40
    • Chen, T.1    He, H.L.2    Church, G.M.3
  • 15
    • 0034696445 scopus 로고    scopus 로고
    • How to make a biological switch
    • Cherry, J. L., and F. R. Adler. 2000. How to make a biological switch. J. Theor. Biol. 203:117-133.
    • (2000) J. Theor. Biol. , vol.203 , pp. 117-133
    • Cherry, J.L.1    Adler, F.R.2
  • 17
    • 0036207347 scopus 로고    scopus 로고
    • Modeling and simulation of genetic regulatory systems: A literature review
    • de Jong, H. 2002. Modeling and simulation of genetic regulatory systems: a literature review. J. Comput. Biol. 9:67-103.
    • (2002) J. Comput. Biol. , vol.9 , pp. 67-103
    • De Jong, H.1
  • 18
    • 0033736476 scopus 로고    scopus 로고
    • Genetic network inference: From co-expression clustering to reverse engineering
    • D'haeseleer, P., S. Liang, and R. Somogyi. 2000. Genetic network inference: from co-expression clustering to reverse engineering. Bioinformatics. 16:707-726.
    • (2000) Bioinformatics , vol.16 , pp. 707-726
    • D'Haeseleer, P.1    Liang, S.2    Somogyi, R.3
  • 19
    • 0034688173 scopus 로고    scopus 로고
    • A synthetic oscillatory network of transcriptional regulators
    • Elowitz, M. B., and S. Leibler. 2000. A synthetic oscillatory network of transcriptional regulators. Nature. 403:335-338.
    • (2000) Nature , vol.403 , pp. 335-338
    • Elowitz, M.B.1    Leibler, S.2
  • 20
    • 0342506826 scopus 로고    scopus 로고
    • Intracellular kinetics of a growing virus: A genetically structured simulation for bacteriophage T7
    • Endy, D., D. Kong, and J. Yin. 1997. Intracellular kinetics of a growing virus: a genetically structured simulation for bacteriophage T7. Biotechnol. Bioeng. 55:375-389.
    • (1997) Biotechnol. Bioeng. , vol.55 , pp. 375-389
    • Endy, D.1    Kong, D.2    Yin, J.3
  • 21
    • 0035905782 scopus 로고    scopus 로고
    • Modelling cellular behaviour
    • Endy, D., and R. Brent. 2001. Modelling cellular behaviour. Nature. 409:391-395.
    • (2001) Nature , vol.409 , pp. 391-395
    • Endy, D.1    Brent, R.2
  • 23
    • 0034688174 scopus 로고    scopus 로고
    • Construction of a genetic toggle switch in Escherichia coli
    • Gardner, T. S., C. R. Cantor, and J. J. Collins. 2000. Construction of a genetic toggle switch in Escherichia coli. Nature. 403:339-342.
    • (2000) Nature , vol.403 , pp. 339-342
    • Gardner, T.S.1    Cantor, C.R.2    Collins, J.J.3
  • 24
    • 0008700424 scopus 로고    scopus 로고
    • Modeling the activity of single genes
    • J. M. Bower and H. Bolouri, editors. MIT Press, Cambridge, MA
    • Gibson, M. A., and E. Mjolsness. 2001. Modeling the activity of single genes. In Computational Modeling of Genetic and Biochemical Networks. J. M. Bower and H. Bolouri, editors. MIT Press, Cambridge, MA. 3-48.
    • (2001) Computational Modeling of Genetic and Biochemical Networks , pp. 3-48
    • Gibson, M.A.1    Mjolsness, E.2
  • 25
    • 0015609281 scopus 로고
    • The logical analysis of continuous, non-linear biochemical control networks
    • Glass, L., and S. A. Kauffman. 1973. The logical analysis of continuous, non-linear biochemical control networks. J. Theor. Biol. 39:103-129.
    • (1973) J. Theor. Biol. , vol.39 , pp. 103-129
    • Glass, L.1    Kauffman, S.A.2
  • 26
    • 0008849269 scopus 로고    scopus 로고
    • From simple to complex oscillatory behavior in metabolic and genetic control networks
    • Goldbeter, A., D. Gonze, G. Houart, J.-C. Leloup, J. Halloy, and G. Dupont. 2001. From simple to complex oscillatory behavior in metabolic and genetic control networks. Chaos. 11:247-260.
    • (2001) Chaos , vol.11 , pp. 247-260
    • Goldbeter, A.1    Gonze, D.2    Houart, G.3    Leloup, J.-C.4    Halloy, J.5    Dupont, G.6
  • 28
    • 0033368475 scopus 로고    scopus 로고
    • Messenger RNA stability and its role in control of gene expression in bacteria and phages
    • Grunberg-Manago, M. 1999. Messenger RNA stability and its role in control of gene expression in bacteria and phages. Annu. Rev. Genet. 33:193-227.
    • (1999) Annu. Rev. Genet. , vol.33 , pp. 193-227
    • Grunberg-Manago, M.1
  • 29
    • 0033016717 scopus 로고    scopus 로고
    • Correlation between protein and mRNA abundance in yeast
    • Gygi, S. P., Y. Rochon, B. R. Franza, and R. Aebersold. 1999. Correlation between protein and mRNA abundance in yeast. Mol. Cell. Biol. 19:1720-1730.
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 1720-1730
    • Gygi, S.P.1    Rochon, Y.2    Franza, B.R.3    Aebersold, R.4
  • 30
    • 0027435395 scopus 로고
    • Quantitative study of the control of HIV-1 gene expression
    • Hammond, B. J. 1993. Quantitative study of the control of HIV-1 gene expression. J. Theor. Biol. 163:199-221.
    • (1993) J. Theor. Biol. , vol.163 , pp. 199-221
    • Hammond, B.J.1
  • 31
    • 0024456475 scopus 로고
    • The role of mRNA and protein stability in gene expression
    • Hargrove, J. L., and F. H. Schmidt. 1989. The role of mRNA and protein stability in gene expression. FASEB J. 3:2360-2370.
    • (1989) FASEB J. , vol.3 , pp. 2360-2370
    • Hargrove, J.L.1    Schmidt, F.H.2
  • 34
    • 0006092502 scopus 로고    scopus 로고
    • Designer gene networks: Towards fundamental cellular control
    • Hasty, J., F. Isaacs, M. Dolnik, D. McMillen, and J. J. Collins. 2001a. Designer gene networks: towards fundamental cellular control. Chaos. 11:207-220.
    • (2001) Chaos , vol.11 , pp. 207-220
    • Hasty, J.1    Isaacs, F.2    Dolnik, M.3    McMillen, D.4    Collins, J.J.5
  • 35
    • 0035319006 scopus 로고    scopus 로고
    • Computational studies of gene regulatory networks: In numero molecular biology
    • Hasty, J., D. McMillen, F. Isaacs, and J. J. Collins. 2001b. Computational studies of gene regulatory networks: in numero molecular biology. Nat. Rev. Genet. 2:268-279.
    • (2001) Nat. Rev. Genet. , vol.2 , pp. 268-279
    • Hasty, J.1    McMillen, D.2    Isaacs, F.3    Collins, J.J.4
  • 36
    • 0033206211 scopus 로고    scopus 로고
    • Dynamical analysis of gene networks requires both mRNA and protein expression information
    • Hatzimanikatis, V., and K. H. Lee. 1999. Dynamical analysis of gene networks requires both mRNA and protein expression information. Metab. Eng. 1:275-281.
    • (1999) Metab. Eng. , vol.1 , pp. 275-281
    • Hatzimanikatis, V.1    Lee, K.H.2
  • 37
    • 0027411327 scopus 로고
    • Synergism in transcriptional activation: A kinetic view
    • Herschlag, D., and F. B. Johnson. 1993. Synergism in transcriptional activation: a kinetic view. Genes Dev. 7:173-179.
    • (1993) Genes Dev. , vol.7 , pp. 173-179
    • Herschlag, D.1    Johnson, F.B.2
  • 40
    • 0029952311 scopus 로고    scopus 로고
    • Absolute mRNA levels and transcriptional initiation rates in Saccharomyces cerevisiae
    • Iyer, V., and K. Struhl. 1996. Absolute mRNA levels and transcriptional initiation rates in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA. 93:5208-5212.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 5208-5212
    • Iyer, V.1    Struhl, K.2
  • 42
    • 0036500993 scopus 로고    scopus 로고
    • Systems biology: A brief overview
    • Kitano, H. 2002. Systems biology: a brief overview. Science. 295:1662-1664.
    • (2002) Science , vol.295 , pp. 1662-1664
    • Kitano, H.1
  • 43
    • 0345549531 scopus 로고    scopus 로고
    • Modeling genetic switches with positive feedback loops
    • Kobayashi, T., L. Chen, and K. Aihara. 2003a. Modeling genetic switches with positive feedback loops. J. Theor. Biol. 221:379-399.
    • (2003) J. Theor. Biol. , vol.221 , pp. 379-399
    • Kobayashi, T.1    Chen, L.2    Aihara, K.3
  • 46
    • 0031616241 scopus 로고    scopus 로고
    • REVEAL, a general reverse engineering algorithm for inference of genetic network architectures
    • R. B. Altman, A. K. Dunker, L. Hunter, and T. E. Klein, editors. World Scientific, Singapore
    • Liang, S., S. Fuhrman, and R. Somogyi. 1998. REVEAL, a general reverse engineering algorithm for inference of genetic network architectures. In Proceedings of the Pacific Symposium on Biocomputing. R. B. Altman, A. K. Dunker, L. Hunter, and T. E. Klein, editors. World Scientific, Singapore. 3:18-29.
    • (1998) Proceedings of the Pacific Symposium on Biocomputing , vol.3 , pp. 18-29
    • Liang, S.1    Fuhrman, S.2    Somogyi, R.3
  • 47
    • 0036166753 scopus 로고    scopus 로고
    • Linear modes of gene expression determined by independent component analysis
    • Liebermeister, W. 2002. Linear modes of gene expression determined by independent component analysis. Bioinformatics. 18:51-60.
    • (2002) Bioinformatics , vol.18 , pp. 51-60
    • Liebermeister, W.1
  • 48
    • 0033485866 scopus 로고    scopus 로고
    • Kinetic dissection of fundamental processes of eukaryotic translation initiation in vitro
    • Lorsch, J. R., and D. Herschlag. 1999. Kinetic dissection of fundamental processes of eukaryotic translation initiation in vitro. EMBO J. 18:6705-6717.
    • (1999) EMBO J. , vol.18 , pp. 6705-6717
    • Lorsch, J.R.1    Herschlag, D.2
  • 49
    • 0037108539 scopus 로고    scopus 로고
    • Ingeneue: A versatile tool for reconstituting genetic networks, with examples from the segment polarity network
    • Meir, E., E. M. Munro, G. M. Odell, and G. von Dassow. 2002. Ingeneue: a versatile tool for reconstituting genetic networks, with examples from the segment polarity network. J. Exp. Zool. 294:216-251.
    • (2002) J. Exp. Zool. , vol.294 , pp. 216-251
    • Meir, E.1    Munro, E.M.2    Odell, G.M.3    Von Dassow, G.4
  • 50
    • 0028844979 scopus 로고
    • A mathematical framework for describing and analysing gene regulatory networks
    • Mestl, T., E. Plahte, and S. W. Omholt. 1995. A mathematical framework for describing and analysing gene regulatory networks. J. Theor. Biol. 176:291-300.
    • (1995) J. Theor. Biol. , vol.176 , pp. 291-300
    • Mestl, T.1    Plahte, E.2    Omholt, S.W.3
  • 51
    • 0037154247 scopus 로고    scopus 로고
    • Deciphering genetic regulatory codes: A challenge for functional genomics
    • Michelson, A. M. 2002. Deciphering genetic regulatory codes: a challenge for functional genomics. Proc. Natl. Acad. Sci. USA. 99:546-548.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 546-548
    • Michelson, A.M.1
  • 53
    • 1942517268 scopus 로고    scopus 로고
    • Trainable gene regulation networks with applications to Drosophila pattern formation
    • J. M. Bower and H. Bolouri, editors. MIT Press, Cambridge, MA
    • Mjolsness, E. 2001. Trainable gene regulation networks with applications to Drosophila pattern formation. In Computational Modeling of Genetic and Biochemical Networks. J. M. Bower and H. Bolouri, editors. MIT Press, Cambridge, MA. 101-117.
    • (2001) Computational Modeling of Genetic and Biochemical Networks , pp. 101-117
    • Mjolsness, E.1
  • 55
    • 0036678794 scopus 로고    scopus 로고
    • Assigning numbers to the arrows: Parameterizing a gene regulation network by using accurate expression kinetics
    • Ronen, M., R. Rosenberg, B. I. Shraiman, and U. Alon. 2002. Assigning numbers to the arrows: parameterizing a gene regulation network by using accurate expression kinetics. Proc. Natl. Acad. Sci. USA. 99: 10555-10560.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 10555-10560
    • Ronen, M.1    Rosenberg, R.2    Shraiman, B.I.3    Alon, U.4
  • 57
    • 0035578429 scopus 로고    scopus 로고
    • Design principles for elementary gene circuits: Elements, methods, and examples
    • Savageau, M. A. 2001. Design principles for elementary gene circuits: elements, methods, and examples. Chaos. 11:142-159.
    • (2001) Chaos , vol.11 , pp. 142-159
    • Savageau, M.A.1
  • 58
    • 0029748326 scopus 로고    scopus 로고
    • Parallel human genome analysis: Microarray-based expression monitoring of 1000 genes
    • Schena, M., D. Shalon, R. Heller, A. Chai, P. O. Brown, and R. W. Davis. 1996. Parallel human genome analysis: microarray-based expression monitoring of 1000 genes. Proc. Natl. Acad. Sci. USA. 93:10614-10619.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 10614-10619
    • Schena, M.1    Shalon, D.2    Heller, R.3    Chai, A.4    Brown, P.O.5    Davis, R.W.6
  • 59
    • 0345983657 scopus 로고    scopus 로고
    • From Boolean to probabilistic Boolean networks as models of genetic regulatory networks
    • Shmulevich, I., E. R. Dougherty, and W. Zhang. 2002. From Boolean to probabilistic Boolean networks as models of genetic regulatory networks. Proceedings of the IEEE. 90:1778-1792.
    • (2002) Proceedings of the IEEE , vol.90 , pp. 1778-1792
    • Shmulevich, I.1    Dougherty, E.R.2    Zhang, W.3
  • 60
    • 0033782304 scopus 로고    scopus 로고
    • Modeling transcriptional control in gene networks: Methods, recent results, and future directions
    • Smolen, P., D. A. Baxter, and J. H. Byme. 2000. Modeling transcriptional control in gene networks: methods, recent results, and future directions. Bull. Math. Biol. 62:247-292.
    • (2000) Bull. Math. Biol. , vol.62 , pp. 247-292
    • Smolen, P.1    Baxter, D.A.2    Byme, J.H.3
  • 61
    • 0003036030 scopus 로고    scopus 로고
    • Genetic network inference in computational models and applications to large-scale gene expression data
    • J. M. Bower and H. Bolouri, editors. MIT Press, Cambridge, MA
    • Somogyi, R., S. Fuhrman, and X. Wen. 2001. Genetic network inference in computational models and applications to large-scale gene expression data. In Computational Modeling of Genetic and Biochemical Networks. J. M. Bower and H. Bolouri, editors. MIT Press, Cambridge, MA. 119-157.
    • (2001) Computational Modeling of Genetic and Biochemical Networks , pp. 119-157
    • Somogyi, R.1    Fuhrman, S.2    Wen, X.3
  • 62
    • 0026409389 scopus 로고
    • Absolute in vivo translation rates of individual codons in Escherichia coli. The two glutamic acid codons, GAA and GAG are translated with a threefold difference in rate
    • Sørensen, M. A., and S. Pedersen. 1991. Absolute in vivo translation rates of individual codons in Escherichia coli. The two glutamic acid codons, GAA and GAG are translated with a threefold difference in rate. J. Mol. Biol. 222:265-280.
    • (1991) J. Mol. Biol. , vol.222 , pp. 265-280
    • Sørensen, M.A.1    Pedersen, S.2
  • 65
    • 0034703437 scopus 로고    scopus 로고
    • Detecting and measuring cotranslational protein degradation in vivo
    • Turner, G. C., and A. Varshavsky. 2000. Detecting and measuring cotranslational protein degradation in vivo. Science. 289:2117-2120.
    • (2000) Science , vol.289 , pp. 2117-2120
    • Turner, G.C.1    Varshavsky, A.2
  • 66
    • 0037833715 scopus 로고    scopus 로고
    • Analysis of complex dynamics in cell cycle regulation
    • J. M. Bower and H. Bolouri, editors. MIT Press, Cambridge, MA
    • Tyson, J. J., M. T. Borisuk, K. Chen, and B. Novak. 2001. Analysis of complex dynamics in cell cycle regulation. In Computational Modeling of Genetic and Biochemical Networks. J. M. Bower and H. Bolouri, editors. MIT Press, Cambridge, MA. 287-305.
    • (2001) Computational Modeling of Genetic and Biochemical Networks , pp. 287-305
    • Tyson, J.J.1    Borisuk, M.T.2    Chen, K.3    Novak, B.4
  • 68
    • 0035082045 scopus 로고    scopus 로고
    • Neural network model of gene expression
    • Vohradský, J. 2001. Neural network model of gene expression. FASEB J. 15:846-854.
    • (2001) FASEB J. , vol.15 , pp. 846-854
    • Vohradský, J.1
  • 70
    • 0034644270 scopus 로고    scopus 로고
    • The segment polarity network is a robust developmental module
    • von Dassow, G., E. Meir, E. M. Munro, and G. M. Odell. 2000. The segment polarity network is a robust developmental module. Nature. 406:188-192.
    • (2000) Nature , vol.406 , pp. 188-192
    • Von Dassow, G.1    Meir, E.2    Munro, E.M.3    Odell, G.M.4
  • 71
    • 0034791625 scopus 로고    scopus 로고
    • Modeling genetic regulatory dynamics in neural development
    • Wahde, M., and J. Hertz. 2001. Modeling genetic regulatory dynamics in neural development. J. Comput. Biol. 8:429-442.
    • (2001) J. Comput. Biol. , vol.8 , pp. 429-442
    • Wahde, M.1    Hertz, J.2
  • 72
    • 0033582718 scopus 로고    scopus 로고
    • A mathematical model for synergistic eukaryotic gene activation
    • Wang, J., K. Ellwood, A. Lehman, M. F. Carey, and Z.-S. She. 1999. A mathematical model for synergistic eukaryotic gene activation. J. Mol. Biol. 286:315-325.
    • (1999) J. Mol. Biol. , vol.286 , pp. 315-325
    • Wang, J.1    Ellwood, K.2    Lehman, A.3    Carey, M.F.4    She, Z.-S.5
  • 74
    • 0032617396 scopus 로고    scopus 로고
    • Modeling regulatory networks with weight matrices
    • R. B. Altman, K. Lauderdale, A. K. Dunker, L. Hunter, T. E. Klein, editors. World Scientific, Singapore
    • Weaver, D. C., C. T. Workman, and G. D. Stormo. 1999. Modeling regulatory networks with weight matrices. In Proceedings of the Pacific Symposium on Biocomputing. R. B. Altman, K. Lauderdale, A. K. Dunker, L. Hunter, T. E. Klein, editors. World Scientific, Singapore. 4:112-123.
    • (1999) Proceedings of the Pacific Symposium on Biocomputing , vol.4 , pp. 112-123
    • Weaver, D.C.1    Workman, C.T.2    Stormo, G.D.3
  • 75
    • 0032556443 scopus 로고    scopus 로고
    • On the relationship between genomic regulatory element organization and gene regulatory dynamics
    • Wolf, D. M., and F. H. Eeckman. 1998. On the relationship between genomic regulatory element organization and gene regulatory dynamics. J. Theor. Biol. 195:167-186.
    • (1998) J. Theor. Biol. , vol.195 , pp. 167-186
    • Wolf, D.M.1    Eeckman, F.H.2
  • 76
    • 0037197936 scopus 로고    scopus 로고
    • Reverse engineering gene networks using singular value decomposition and robust regression
    • Yeung, M. K. S., J. Tegnér, and J. J. Collins. 2002. Reverse engineering gene networks using singular value decomposition and robust regression. Proc. Natl. Acad. Sci. USA. 99:6163-6168.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 6163-6168
    • Yeung, M.K.S.1    Tegnér, J.2    Collins, J.J.3
  • 77
    • 0038298805 scopus 로고    scopus 로고
    • Feedback regulation in the lactose operon: A mathematical modeling study and comparison with experimental data
    • Yildirim, N., and M. C. Mackey. 2003. Feedback regulation in the lactose operon: a mathematical modeling study and comparison with experimental data. Biophys. J. 84:2841-2851.
    • (2003) Biophys. J. , vol.84 , pp. 2841-2851
    • Yildirim, N.1    Mackey, M.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.