-
1
-
-
0029781935
-
The oligonucleotide probe database (OPD)
-
Alm, E.W., Oerther, D., Larson, N., Stahl, D.A., and Raskin, L. (1996) The oligonucleotide probe database (OPD). Appl Environ Microbiol 62: 3557-3559.
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 3557-3559
-
-
Alm, E.W.1
Oerther, D.2
Larson, N.3
Stahl, D.A.4
Raskin, L.5
-
2
-
-
0035892657
-
Progression of natural attenuation processes at a crude oil spill site. II. Controls on spatial distribution of microbial populations
-
Bekins, B.A., Cozzarelli, I.M., Godsy, E.M., Warren, E., Essaid, H.I., and Tucillo, M.E. (2001) Progression of natural attenuation processes at a crude oil spill site. II. Controls on spatial distribution of microbial populations. J Contam Hydrol 53: 387-406.
-
(2001)
J Contam Hydrol
, vol.53
, pp. 387-406
-
-
Bekins, B.A.1
Cozzarelli, I.M.2
Godsy, E.M.3
Warren, E.4
Essaid, H.I.5
Tucillo, M.E.6
-
3
-
-
0001938042
-
Microbial control of mineral-groundwater equilibria: Macroscale to microscale
-
Bennett, P.C., Hiebert, F.K., and Rogers, J.R. (2000) Microbial control of mineral-groundwater equilibria: macroscale to microscale. Hydrogeol J 8: 47-62.
-
(2000)
Hydrogeol J
, vol.8
, pp. 47-62
-
-
Bennett, P.C.1
Hiebert, F.K.2
Rogers, J.R.3
-
4
-
-
0035984122
-
Changes in archaeal, bacterial and eukaryal assemblages along a salinity gradient by comparison of genetic fingerprinting methods in a multipond solar saltern
-
Casamayor, E.O., Massana, R., Benlloch, S., Øverås, L., Díez, B., Goddard, V.J., et al. (2002) Changes in archaeal, bacterial and eukaryal assemblages along a salinity gradient by comparison of genetic fingerprinting methods in a multipond solar saltern. Environ Microbiol 4: 338-348.
-
(2002)
Environ Microbiol
, vol.4
, pp. 338-348
-
-
Casamayor, E.O.1
Massana, R.2
Benlloch, S.3
Øverås, L.4
Díez, B.5
Goddard, V.J.6
-
5
-
-
0028975078
-
Deducing the distribution of terminal electron accepting processes in hydrologically diverse groundwater systems
-
Chapelle, F.H., McMahon, P.B., Dubrovsky, N.M., Fujii, R.F., Oaksford, E.T., and Vroblesky, D.A. (1995) Deducing the distribution of terminal electron accepting processes in hydrologically diverse groundwater systems. Water Resour Res 31: 359-371.
-
(1995)
Water Resour Res
, vol.31
, pp. 359-371
-
-
Chapelle, F.H.1
McMahon, P.B.2
Dubrovsky, N.M.3
Fujii, R.F.4
Oaksford, E.T.5
Vroblesky, D.A.6
-
7
-
-
0034308006
-
Characterization of redox conditions in groundwater contaminant plumes
-
Christensen, T.H., Bjerg, P.L., Banwart, S.A., Jakobsen, R., Heron, G., and Albrechtsen, H.-J. (2000) Characterization of redox conditions in groundwater contaminant plumes. J Contam Hydrol 45: 165-241.
-
(2000)
J Contam Hydrol
, vol.45
, pp. 165-241
-
-
Christensen, T.H.1
Bjerg, P.L.2
Banwart, S.A.3
Jakobsen, R.4
Heron, G.5
Albrechtsen, H.-J.6
-
8
-
-
0034665862
-
Geochemical and microbiological methods for evaluating anaerobic processes in an aquifer contaminated by landfill leachate
-
Cozzarelli, I.M., Suflita, J.M., Ulrich, G.A., Harris, S.H., Scholl, M.A., Schlottmann, J.L., and Christenson, S. (2000) Geochemical and microbiological methods for evaluating anaerobic processes in an aquifer contaminated by landfill leachate. Environ Sci Technol 34: 4025-4033.
-
(2000)
Environ Sci Technol
, vol.34
, pp. 4025-4033
-
-
Cozzarelli, I.M.1
Suflita, J.M.2
Ulrich, G.A.3
Harris, S.H.4
Scholl, M.A.5
Schlottmann, J.L.6
Christenson, S.7
-
9
-
-
0035987560
-
Natural attenuation of chlorinated solvents at Area 6, Dover Air Force Base: Characterization of microbial community structure
-
Davis, J.W., Odom, J.M., DeWeerd, K.A., Stahl, D.A., Fishbain, S.S., West, R.J., et al. (2002) Natural attenuation of chlorinated solvents at Area 6, Dover Air Force Base: characterization of microbial community structure. J Contam Hydrol 57: 41-59.
-
(2002)
J Contam Hydrol
, vol.57
, pp. 41-59
-
-
Davis, J.W.1
Odom, J.M.2
DeWeerd, K.A.3
Stahl, D.A.4
Fishbain, S.S.5
West, R.J.6
-
10
-
-
0032189023
-
Microbial diversity in a hydrocarbon- and chlorinated solvent-contaminated aquifer undergoing intrinsic bioremediation
-
Dojka, M.A., Hugenholtz, P., Haack, S.K., and Pace, N.R. (1998) Microbial diversity in a hydrocarbon- and chlorinated solvent-contaminated aquifer undergoing intrinsic bioremediation. Appl Environ Microbiol 64: 3869-3877.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 3869-3877
-
-
Dojka, M.A.1
Hugenholtz, P.2
Haack, S.K.3
Pace, N.R.4
-
11
-
-
18744374590
-
Statistical analysis of denaturing gel electrophoresis (DGE) fingerprinting patterns
-
Fromin, N., Hamelin, J., Tarnawski, S., Roesti, D., Jourdain-Miserez, K., Forestier, N., et al. (2002) Statistical analysis of denaturing gel electrophoresis (DGE) fingerprinting patterns. Environ Microbiol 4: 634-643.
-
(2002)
Environ Microbiol
, vol.4
, pp. 634-643
-
-
Fromin, N.1
Hamelin, J.2
Tarnawski, S.3
Roesti, D.4
Jourdain-Miserez, K.5
Forestier, N.6
-
12
-
-
0000615869
-
Extraction from natural planktonic microorganisms of DNA suitable for molecular biological studies
-
Fuhrman, J.A., Comeau, D.E., Hagstrom, A., and Chan, A.M. (1988) Extraction from natural planktonic microorganisms of DNA suitable for molecular biological studies. Appl Environ Microbiol 54: 1426-1428.
-
(1988)
Appl Environ Microbiol
, vol.54
, pp. 1426-1428
-
-
Fuhrman, J.A.1
Comeau, D.E.2
Hagstrom, A.3
Chan, A.M.4
-
14
-
-
0002778264
-
Microbial populations in contaminant plumes
-
Haack, S.K., and Bekins, B.A. (2000) Microbial populations in contaminant plumes. Hydrogeol J 8: 63-76.
-
(2000)
Hydrogeol J
, vol.8
, pp. 63-76
-
-
Haack, S.K.1
Bekins, B.A.2
-
15
-
-
0036252074
-
Microbial diversity along a transect of agronomic zones
-
Ibekwe, A.M., Kennedy, A.C., Frohne, P.S., Papiernik, S.K., Yang, C.-H., and Crowley, D.E. (2002) Microbial diversity along a transect of agronomic zones. FEMS Microbiol Ecol 39: 183-191.
-
(2002)
FEMS Microbiol Ecol
, vol.39
, pp. 183-191
-
-
Ibekwe, A.M.1
Kennedy, A.C.2
Frohne, P.S.3
Papiernik, S.K.4
Yang, C.-H.5
Crowley, D.E.6
-
16
-
-
0037108148
-
Field evidence for a protistan role in an organically-contaminated aquifer
-
Kinner, N.E., Harvey, R.W., Shay, D.M., Metge, D.W., and Warren, A. (2002) Field evidence for a protistan role in an organically-contaminated aquifer. Environ Sci Technol 36: 4312-4318.
-
(2002)
Environ Sci Technol
, vol.36
, pp. 4312-4318
-
-
Kinner, N.E.1
Harvey, R.W.2
Shay, D.M.3
Metge, D.W.4
Warren, A.5
-
17
-
-
0035984124
-
Stratification and seasonal stability of diverse bacterial communities in a Pinus merkusii (pine) forest soil in central Java
-
Krave, A.S., Lin, B., Braster, M., Laverman, A.M., van Straalen, N.M., Röling, W.F.M., and van Verseveld, H.W. (2002) Stratification and seasonal stability of diverse bacterial communities in a Pinus merkusii (pine) forest soil in central Java. Indonesia Environ Microbiol 4: 361-373.
-
(2002)
Indonesia Environ Microbiol
, vol.4
, pp. 361-373
-
-
Krave, A.S.1
Lin, B.2
Braster, M.3
Laverman, A.M.4
Van Straalen, N.M.5
Röling, W.F.M.6
Van Verseveld, H.W.7
-
18
-
-
0033831879
-
Temporal variations in parameters reflecting terminal-electron-accepting- processes in an aquifer contaminated with waste fuel and chlorinated solvents
-
McGuire, J.T., Smith, E.W., Long, D.T., Hyndman, D.W., Haack, S.K., Klug, M.J., and Velbel, M.A. (2000) Temporal variations in parameters reflecting terminal-electron-accepting-processes in an aquifer contaminated with waste fuel and chlorinated solvents. Chem Geol 169: 471-485.
-
(2000)
Chem Geol
, vol.169
, pp. 471-485
-
-
McGuire, J.T.1
Smith, E.W.2
Long, D.T.3
Hyndman, D.W.4
Haack, S.K.5
Klug, M.J.6
Velbel, M.A.7
-
19
-
-
0037096115
-
Evaluating behavior of oxygen, nitrate and sulfate during recharge and quantifying reaction rates in a contaminated aquifer
-
McGuire, J.T., Long, D.T., Klug, M.J., Haack, S.K., and Hyndman, D.W. (2002) Evaluating behavior of oxygen, nitrate and sulfate during recharge and quantifying reaction rates in a contaminated aquifer. Environ Sci Technol 36: 2693-2700.
-
(2002)
Environ Sci Technol
, vol.36
, pp. 2693-2700
-
-
McGuire, J.T.1
Long, D.T.2
Klug, M.J.3
Haack, S.K.4
Hyndman, D.W.5
-
20
-
-
0000677199
-
Nucleic-acid characterization of the identity and activity of subsurface microorganisms
-
Madsen, E.L. (2000) Nucleic-acid characterization of the identity and activity of subsurface microorganisms. Hydrogeol J 8: 112-125.
-
(2000)
Hydrogeol J
, vol.8
, pp. 112-125
-
-
Madsen, E.L.1
-
21
-
-
0001823647
-
Bacterial community fingerprinting of amplified 16S and 16S-23S ribosomal DNA gene sequences and restriction endonuclease analysis (ARDRA)
-
3.3.2
-
Massol-Deya, A.A., Odelson, D.A., Hickey, R.F., and Tiedje, J.M. (1995) Bacterial community fingerprinting of amplified 16S and 16S-23S ribosomal DNA gene sequences and restriction endonuclease analysis (ARDRA). Mol Microb Ecol Manual 3.3.2: 1-8.
-
(1995)
Mol Microb Ecol Manual
, pp. 1-8
-
-
Massol-Deya, A.A.1
Odelson, D.A.2
Hickey, R.F.3
Tiedje, J.M.4
-
22
-
-
0035172624
-
The predatory soil flagellate Heteromita globosa stimulates toluene biodegradation by a Pseudomonas sp.
-
Mattison, R.G., and Harayama, S. (2001) The predatory soil flagellate Heteromita globosa stimulates toluene biodegradation by a Pseudomonas sp. FEMS Microbiol Ecol 194: 39-45.
-
(2001)
FEMS Microbiol Ecol
, vol.194
, pp. 39-45
-
-
Mattison, R.G.1
Harayama, S.2
-
23
-
-
0036727103
-
The bacterivorous soil flagellate Heteromita globosa reduces bacterial clogging under denitrifying conditions in sand-filled aquifer columns
-
Mattison, R.G., Taki, H., and Harayama, S. (2002) The bacterivorous soil flagellate Heteromita globosa reduces bacterial clogging under denitrifying conditions in sand-filled aquifer columns. Appl Environ Microbiol 68: 4539-4545.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 4539-4545
-
-
Mattison, R.G.1
Taki, H.2
Harayama, S.3
-
24
-
-
0003773972
-
-
Washington, DC: National Academy Press
-
NRC (2000) Natural Attenuation for Groundwater Remediation. Washington, DC: National Academy Press (http:// www.nap.edu/catalog/9792.html).
-
(2000)
Natural Attenuation for Groundwater Remediation
-
-
-
25
-
-
0029796310
-
Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis
-
Nübel, U., Engelen, B., Felske, A., Snaidr, J., Wieshuber, A., Amann, R.I., et al. (1996) Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis. J Bacteriol 178: 5636-5643.
-
(1996)
J Bacteriol
, vol.178
, pp. 5636-5643
-
-
Nübel, U.1
Engelen, B.2
Felske, A.3
Snaidr, J.4
Wieshuber, A.5
Amann, R.I.6
-
26
-
-
1942544937
-
Drilling, coring and sampling subsurface environments
-
Hurst, C.J., (ed. in chief). Washington, DC: American Society for Microbiology Press
-
Phelps, T.J., and Fredrickson, J.K. (2002) Drilling, coring and sampling subsurface environments. In Manual of Environmental Microbiology. Hurst, C.J., (ed. in chief). Washington, DC: American Society for Microbiology Press, pp. 679-695.
-
(2002)
Manual of Environmental Microbiology
, pp. 679-695
-
-
Phelps, T.J.1
Fredrickson, J.K.2
-
27
-
-
0035892699
-
Microbiological analysis of multi-level borehole samples from a contaminated groundwater system
-
Pickup, R.W., Rhodes, G., Alamillo, M.L., Mallinson, H.E.H., Thornton, S.F., and Lerner, D.N. (2001) Microbiological analysis of multi-level borehole samples from a contaminated groundwater system. J Contam Hydrol 53: 269-284.
-
(2001)
J Contam Hydrol
, vol.53
, pp. 269-284
-
-
Pickup, R.W.1
Rhodes, G.2
Alamillo, M.L.3
Mallinson, H.E.H.4
Thornton, S.F.5
Lerner, D.N.6
-
28
-
-
0009752612
-
The measurement of diversity in different types of biological collections
-
Pielou, E.C. (1966) The measurement of diversity in different types of biological collections. J Theor Biol 13: 131-144.
-
(1966)
J Theor Biol
, vol.13
, pp. 131-144
-
-
Pielou, E.C.1
-
29
-
-
0028165830
-
Group-specific 16S rRNA hybridization probes to describe natural communities of methanogens
-
Raskin, L., Stromley, J.M., Rittmann, B.E., and Stahl, D.A. (1994) Group-specific 16S rRNA hybridization probes to describe natural communities of methanogens. Appl Environ Microbiol 60: 1232-1240.
-
(1994)
Appl Environ Microbiol
, vol.60
, pp. 1232-1240
-
-
Raskin, L.1
Stromley, J.M.2
Rittmann, B.E.3
Stahl, D.A.4
-
30
-
-
0033651995
-
Analysis of microbial communities in a landfill leachate polluted aquifer using a new method for anaerobic physiological profiling and 16S rDNA based fingerprinting
-
Röling, W.F.M., van Breukelen, B.M., Braster, M., Goeltom, M.T., Groen, J., and van Verseveld, H.W. (2000) Analysis of microbial communities in a landfill leachate polluted aquifer using a new method for anaerobic physiological profiling and 16S rDNA based fingerprinting. Microb Ecol 40: 177-188.
-
(2000)
Microb Ecol
, vol.40
, pp. 177-188
-
-
Röling, W.F.M.1
Van Breukelen, B.M.2
Braster, M.3
Goeltom, M.T.4
Groen, J.5
Van Verseveld, H.W.6
-
32
-
-
0035054783
-
Spatial and temporal patterns of bacterial density and metabolic activity in a karst aquifer
-
Simon, K.S., Gibert, J., Petiot, P., and Laurent, R. (2001) Spatial and temporal patterns of bacterial density and metabolic activity in a karst aquifer. Arch Hydrobiol 151: 67-82.
-
(2001)
Arch Hydrobiol
, vol.151
, pp. 67-82
-
-
Simon, K.S.1
Gibert, J.2
Petiot, P.3
Laurent, R.4
-
33
-
-
33344464667
-
Measurement of diversity
-
Simpson, E.H. (1949) Measurement of diversity. Nature 163: 688.
-
(1949)
Nature
, vol.163
, pp. 688
-
-
Simpson, E.H.1
-
34
-
-
0031977257
-
Analysis of Biolog GN substrate utilization patterns by microbial communities
-
Smalla, K., Wachtendorf, U., Heuer, H., Liu, W.-T., and Forney, L. (1998) Analysis of Biolog GN substrate utilization patterns by microbial communities. Appl Environ Microbiol 64: 1220-1225.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 1220-1225
-
-
Smalla, K.1
Wachtendorf, U.2
Heuer, H.3
Liu, W.-T.4
Forney, L.5
-
35
-
-
1942544941
-
-
An American Academy of Microbiology Critical Issues Colloquia Report. Washington, DC: American Academy of Microbiology
-
Stahl, D.A., and Tiedje, J.M. (2002) Microbial Ecology and Genomics: a Crossroads of Opportunity. An American Academy of Microbiology Critical Issues Colloquia Report. Washington, DC: American Academy of Microbiology (http://www.asm.org/publications/).
-
(2002)
Microbial Ecology and Genomics: A Crossroads of Opportunity
-
-
Stahl, D.A.1
Tiedje, J.M.2
-
36
-
-
0024005650
-
Use of phylogenetically based hybridization probes for studies of ruminal microbial ecology
-
Stahl, D.A., Flesher, B., Mansfield, H.R., and Montgomery, L. (1988) Use of phylogenetically based hybridization probes for studies of ruminal microbial ecology. Appl Environ Microbiol 54: 1079-1084.
-
(1988)
Appl Environ Microbiol
, vol.54
, pp. 1079-1084
-
-
Stahl, D.A.1
Flesher, B.2
Mansfield, H.R.3
Montgomery, L.4
-
37
-
-
0036010639
-
Microenvironments and microbial community structure in sediments
-
Tankéré, S.P.C., Bourne, D.G., Muller, F.L.L., and Torsvik, V. (2002) Microenvironments and microbial community structure in sediments. Environ Microbiol 4: 97-105.
-
(2002)
Environ Microbiol
, vol.4
, pp. 97-105
-
-
Tankéré, S.P.C.1
Bourne, D.G.2
Muller, F.L.L.3
Torsvik, V.4
-
38
-
-
0036270789
-
Microbial diversity and function in soil: From genes to ecosystems
-
Torsvik, V., and Øverås, L. (2002) Microbial diversity and function in soil: from genes to ecosystems. Curr Opin Microbiol 5: 240-245.
-
(2002)
Curr Opin Microbiol
, vol.5
, pp. 240-245
-
-
Torsvik, V.1
Øverås, L.2
-
39
-
-
0037052493
-
Prokaryotic diversity - Magnitude, dynamics and controlling factors
-
Torsvik, V., Øverås, L., and Thingstad, T.F. (2002) Prokaryotic diversity - magnitude, dynamics and controlling factors. Science 296: 1064-1066.
-
(2002)
Science
, vol.296
, pp. 1064-1066
-
-
Torsvik, V.1
Øverås, L.2
Thingstad, T.F.3
-
40
-
-
0028160187
-
Temporal and spatial changes of terminal electron accepting processes in a petroleum hydrocarbon contaminated aquifer and the significance for contaminant biodegradation
-
Vroblesky, D.A., and Chapelle, F.H. (1994) Temporal and spatial changes of terminal electron accepting processes in a petroleum hydrocarbon contaminated aquifer and the significance for contaminant biodegradation. Water Resour Res 30: 1561-1570.
-
(1994)
Water Resour Res
, vol.30
, pp. 1561-1570
-
-
Vroblesky, D.A.1
Chapelle, F.H.2
-
41
-
-
0032463021
-
Phylogeny of dissimilatory sulphite reductases supports an early origin of sulphate respiration
-
Wagner, M.A., Roger, J., Flax, J.L., Brusseau, G.A., and Stahl, D.A. (1998) Phylogeny of dissimilatory sulphite reductases supports an early origin of sulphate respiration. J Bacteriol 180: 2975-2982.
-
(1998)
J Bacteriol
, vol.180
, pp. 2975-2982
-
-
Wagner, M.A.1
Roger, J.2
Flax, J.L.3
Brusseau, G.A.4
Stahl, D.A.5
-
42
-
-
0345195995
-
Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis
-
Wintzingerode, F.V., Göbel, U.B., and Stackebrandt, E. (1997) Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiol Rev 21: 213-229.
-
(1997)
FEMS Microbiol Rev
, vol.21
, pp. 213-229
-
-
Wintzingerode, F.V.1
Göbel, U.B.2
Stackebrandt, E.3
-
43
-
-
0030070838
-
DNA recovery from soils of diverse composition
-
Zhou, J., Bruns, M.A., and Tiedje, J.M. (1996) DNA recovery from soils of diverse composition. Appl Environ Microbiol 62: 316-322.
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 316-322
-
-
Zhou, J.1
Bruns, M.A.2
Tiedje, J.M.3
|