-
1
-
-
0029163720
-
The early evolution of cellular life
-
PID: 21236984, COI: 1:STN:280:DC%2BC3M7itFajuw%3D%3D
-
Gogarten JP: The early evolution of cellular life. Trends Ecol Evol. 1995, 10: 147-151. 10.1016/S0169-5347(00)89024-2. DOI: 10.1016/S0169-5347(00)89024-2
-
(1995)
Trends Ecol Evol
, vol.10
, pp. 147-151
-
-
Gogarten, J.P.1
-
2
-
-
9144225618
-
Bootstrap, Bayesian probability and maximum likelihood mapping: Exploring new tools for comparative genome analyses
-
PID: 11918828
-
Zhaxybayeva O, Gogarten JP: Bootstrap, Bayesian probability and maximum likelihood mapping: Exploring new tools for comparative genome analyses. BMC Genomics. 2002, 3: 4-10.1186/1471-2164-3-4. DOI: 10.1186/1471-2164-3-4
-
(2002)
BMC Genomics
, vol.3
, pp. 4
-
-
Zhaxybayeva, O.1
Gogarten, J.P.2
-
3
-
-
0031002417
-
Likelihood-mapping: a simple method to visualize phylogenetic content of a sequence alignment
-
PID: 9192648, COI: 1:CAS:528:DyaK2sXktF2ruro%3D
-
Strimmer K, von Haeseler A: Likelihood-mapping: a simple method to visualize phylogenetic content of a sequence alignment. Proc Natl Acad Sci USA. 1997, 94: 6815-6819. 10.1073/pnas.94.13.6815. DOI: 10.1073/pnas.94.13.6815
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 6815-6819
-
-
Strimmer, K.1
von Haeseler, A.2
-
4
-
-
9144255640
-
An improved probability mapping approach to assess genome mosaicism
-
PID: 12974984
-
Zhaxybayeva O, Gogarten JP: An improved probability mapping approach to assess genome mosaicism. BMC Genomics. 2003, 4: 37-10.1186/1471-2164-4-37. DOI: 10.1186/1471-2164-4-37
-
(2003)
BMC Genomics
, vol.4
, pp. 37
-
-
Zhaxybayeva, O.1
Gogarten, J.P.2
-
5
-
-
2242447089
-
Whole-genome analysis of photosynthetic prokaryotes
-
PID: 12446909, COI: 1:CAS:528:DC%2BD38Xosl2kur8%3D
-
Raymond J, Zhaxybayeva O, Gogarten JP, Gerdes SY, Blankenship RE: Whole-genome analysis of photosynthetic prokaryotes. Science. 2002, 298: 1616-1620. 10.1126/science.1075558. DOI: 10.1126/science.1075558
-
(2002)
Science
, vol.298
, pp. 1616-1620
-
-
Raymond, J.1
Zhaxybayeva, O.2
Gogarten, J.P.3
Gerdes, S.Y.4
Blankenship, R.E.5
-
6
-
-
0003421005
-
-
Sinauer Associates, Sunderland, MA
-
Li W-H: Molecular Evolution. 1997, Sunderland, MA: Sinauer Associates
-
(1997)
Molecular Evolution
-
-
Li, W.-H.1
-
7
-
-
0035520029
-
Geometry of the space of phylogenetic trees
-
Billera LJ, Holmes SP, Vogtmann K: Geometry of the space of phylogenetic trees. Adv Appl Math. 2001, 27: 733-767. 10.1006/aama.2001.0759. DOI: 10.1006/aama.2001.0759
-
(2001)
Adv Appl Math
, vol.27
, pp. 733-767
-
-
Billera, L.J.1
Holmes, S.P.2
Vogtmann, K.3
-
8
-
-
0037329108
-
Comparison of bayesian and maximum likelihood bootstrap measures of phylogenetic reliability
-
PID: 12598692, COI: 1:CAS:528:DC%2BD3sXhsVOiur0%3D
-
Douady CJ, Delsuc F, Boucher Y, Doolittle WF, Douzery EJ: Comparison of bayesian and maximum likelihood bootstrap measures of phylogenetic reliability. Mol Biol Evol. 2003, 20: 248-254. 10.1093/molbev/msg042. DOI: 10.1093/molbev/msg042
-
(2003)
Mol Biol Evol
, vol.20
, pp. 248-254
-
-
Douady, C.J.1
Delsuc, F.2
Boucher, Y.3
Doolittle, W.F.4
Douzery, E.J.5
-
9
-
-
0037329391
-
Bayes or bootstrap? A simulation study comparing the performance of bayesian markov chain monte carlo sampling and bootstrapping in assessing phylogenetic confidence
-
PID: 12598693, COI: 1:CAS:528:DC%2BD3sXhsVOiuro%3D
-
Alfaro ME, Zoller S, Lutzoni F: Bayes or bootstrap? A simulation study comparing the performance of bayesian markov chain monte carlo sampling and bootstrapping in assessing phylogenetic confidence. Mol Biol Evol. 2003, 20: 255-266. 10.1093/molbev/msg028. DOI: 10.1093/molbev/msg028
-
(2003)
Mol Biol Evol
, vol.20
, pp. 255-266
-
-
Alfaro, M.E.1
Zoller, S.2
Lutzoni, F.3
-
10
-
-
0032025857
-
Is it better to add taxa or characters to a difficult phylogenetic problem?
-
PID: 12064243, COI: 1:STN:280:DC%2BD38zitVKrtA%3D%3D
-
Graybeal A: Is it better to add taxa or characters to a difficult phylogenetic problem?. Syst Biol. 1998, 47: 9-17. 10.1080/106351598260996. DOI: 10.1080/106351598260996
-
(1998)
Syst Biol
, vol.47
, pp. 9-17
-
-
Graybeal, A.1
-
11
-
-
0242669921
-
Is sparse taxon sampling a problem for phylogenetic inference?
-
PID: 12554446
-
Hillis DM, Pollock DD, McGuire JA, Zwickl DJ: Is sparse taxon sampling a problem for phylogenetic inference?. Syst Biol. 2003, 52: 124-126. 10.1080/10635150309356. DOI: 10.1080/10635150390132911
-
(2003)
Syst Biol
, vol.52
, pp. 124-126
-
-
Hillis, D.M.1
Pollock, D.D.2
McGuire, J.A.3
Zwickl, D.J.4
-
12
-
-
0037291976
-
Taxon sampling, bioinformatics, and phylogenomics
-
PID: 12554445
-
Rosenberg MS, Kumar S: Taxon sampling, bioinformatics, and phylogenomics. Syst Biol. 2003, 52: 119-124. 10.1080/10635150309344. DOI: 10.1080/10635150390132894
-
(2003)
Syst Biol
, vol.52
, pp. 119-124
-
-
Rosenberg, M.S.1
Kumar, S.2
-
13
-
-
0042027842
-
Phylogenetics and the cohesion of bacterial genomes
-
PID: 12907801, COI: 1:CAS:528:DC%2BD3sXmtVGqs7g%3D
-
Daubin V, Moran NA, Ochman H: Phylogenetics and the cohesion of bacterial genomes. Science. 2003, 301: 829-832. 10.1126/science.1086568. DOI: 10.1126/science.1086568
-
(2003)
Science
, vol.301
, pp. 829-832
-
-
Daubin, V.1
Moran, N.A.2
Ochman, H.3
-
14
-
-
0034622999
-
Molecular evidence for the early evolution of photosynthesis
-
PID: 10976061, COI: 1:CAS:528:DC%2BD3cXmsV2hsbo%3D
-
Xiong J, Fischer WM, Inoue K, Nakahara M, Bauer CE: Molecular evidence for the early evolution of photosynthesis. Science. 2000, 289: 1724-1730. 10.1126/science.289.5485.1724. DOI: 10.1126/science.289.5485.1724
-
(2000)
Science
, vol.289
, pp. 1724-1730
-
-
Xiong, J.1
Fischer, W.M.2
Inoue, K.3
Nakahara, M.4
Bauer, C.E.5
-
15
-
-
0025300402
-
Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya
-
PID: 2112744, COI: 1:STN:280:DyaK3c3otVCiug%3D%3D
-
Woese CR, Kandler O, Wheelis ML: Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci USA. 1990, 87: 4576-4579. DOI: 10.1073/pnas.87.12.4576
-
(1990)
Proc Natl Acad Sci USA
, vol.87
, pp. 4576-4579
-
-
Woese, C.R.1
Kandler, O.2
Wheelis, M.L.3
-
16
-
-
0024285855
-
Origin of the eukaryotic nucleus determined by rate-invariant analysis of rRNA sequences
-
PID: 3340165, COI: 1:CAS:528:DyaL1cXht1OitrY%3D
-
Lake JA: Origin of the eukaryotic nucleus determined by rate-invariant analysis of rRNA sequences. Nature. 1988, 331: 184-186. 10.1038/331184a0. DOI: 10.1038/331184a0
-
(1988)
Nature
, vol.331
, pp. 184-186
-
-
Lake, J.A.1
-
17
-
-
0029815789
-
Phylogenetic analysis of carbamoylphosphate synthetase genes: complex evolutionary history includes an internal duplication within a gene which can root the tree of life
-
PID: 8752005, COI: 1:CAS:528:DyaK28XltlSmsLY%3D
-
Lawson FS, Charlebois RL, Dillon JA: Phylogenetic analysis of carbamoylphosphate synthetase genes: complex evolutionary history includes an internal duplication within a gene which can root the tree of life. Mol Biol Evol. 1996, 13: 970-977. DOI: 10.1093/oxfordjournals.molbev.a025665
-
(1996)
Mol Biol Evol
, vol.13
, pp. 970-977
-
-
Lawson, F.S.1
Charlebois, R.L.2
Dillon, J.A.3
-
18
-
-
0027522463
-
Molecular studies on an ancient gene encoding for carbamoyl-phosphate synthetase
-
COI: 1:CAS:528:DyaK3sXhvVCqsL8%3D
-
Schofield JP: Molecular studies on an ancient gene encoding for carbamoyl-phosphate synthetase. Clin Sci (Lond). 1993, 84: 119-128. DOI: 10.1042/cs0840119
-
(1993)
Clin Sci (Lond)
, vol.84
, pp. 119-128
-
-
Schofield, J.P.1
-
19
-
-
0029591605
-
Evolutionary relationships of the carbamoylphosphate synthetase genes
-
PID: 8587126, COI: 1:CAS:528:DyaK28XivFOjug%3D%3D
-
van den Hoff MJ, Jonker A, Beintema JJ, Lamers WH: Evolutionary relationships of the carbamoylphosphate synthetase genes. J Mol Evol. 1995, 41: 813-832. DOI: 10.1007/BF00173161
-
(1995)
J Mol Evol
, vol.41
, pp. 813-832
-
-
van den Hoff, M.J.1
Jonker, A.2
Beintema, J.J.3
Lamers, W.H.4
-
20
-
-
0344304200
-
Deciphering the molecular record for the early evolution of life: Gene duplication and horizontal gene transfer
-
Wiegel J, Adams MWW, (eds), Taylor & Francis, Philadelphia
-
Olendzenski L, Gogarten JP: Deciphering the molecular record for the early evolution of life: Gene duplication and horizontal gene transfer. In: Thermophiles: The Keys to Molecular Evolution and the Origin of Life?. Edited by: Wiegel J, Adams MWW. 1998, Philadelphia: Taylor & Francis, 165-176.
-
(1998)
In: Thermophiles: The Keys to Molecular Evolution and the Origin of Life?
, pp. 165-176
-
-
Olendzenski, L.1
Gogarten, J.P.2
-
21
-
-
0004226949
-
Horizontal gene transfer and fusing lines of descent: the archaebacteria - a chimera?
-
Syvanen M, Kado C, (eds), 1, Chapman and Hall, London
-
Olendzenski L, Hilario E, Gogarten JP: Horizontal gene transfer and fusing lines of descent: the archaebacteria - a chimera?. In: Horizontal Gene Transfer. Edited by: Syvanen M, Kado C. 1998, London: Chapman and Hall, 349-362. 1
-
(1998)
In: Horizontal Gene Transfer
, pp. 349-362
-
-
Olendzenski, L.1
Hilario, E.2
Gogarten, J.P.3
-
22
-
-
0036308267
-
Updating carbamoylphosphate synthase (CPS) phylogenies: occurrence and phylogenetic identity of archaeal CPS genes
-
PID: 12107592, COI: 1:CAS:528:DC%2BD38XmtFejtLk%3D
-
Cammarano P, Gribaldo S, Johann A: Updating carbamoylphosphate synthase (CPS) phylogenies: occurrence and phylogenetic identity of archaeal CPS genes. J Mol Evol. 2002, 55: 153-160. 10.1007/s00239-002-2312-6. DOI: 10.1007/s00239-002-2312-6
-
(2002)
J Mol Evol
, vol.55
, pp. 153-160
-
-
Cammarano, P.1
Gribaldo, S.2
Johann, A.3
-
23
-
-
0008573315
-
A model of the early evolution of organisms: the arisal of the three domains of life from the common ancestor
-
Hartman H, Matsuno K, (eds), World Scientific Publishing, Singapore
-
Zillig W, Palm P, Klenk H-P: A model of the early evolution of organisms: the arisal of the three domains of life from the common ancestor. In: The Origin and Evolution of the Cell. Edited by: Hartman H, Matsuno K. 1992, Singapore: World Scientific Publishing, 163-182.
-
(1992)
In: The Origin and Evolution of the Cell
, pp. 163-182
-
-
Zillig, W.1
Palm, P.2
Klenk, H.-P.3
-
24
-
-
0027420885
-
Evolution of HSP70 gene and its implications regarding relationships between archaebacteria, eubacteria, and eukaryotes
-
PID: 8114110, COI: 1:CAS:528:DyaK2cXkvVCitg%3D%3D
-
Gupta RS, Golding GB: Evolution of HSP70 gene and its implications regarding relationships between archaebacteria, eubacteria, and eukaryotes. J Mol Evol. 1993, 37: 573-582. 10.1007/BF00182743. DOI: 10.1007/BF00182743
-
(1993)
J Mol Evol
, vol.37
, pp. 573-582
-
-
Gupta, R.S.1
Golding, G.B.2
-
25
-
-
0032404453
-
You are what you eat: a gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes
-
PID: 9724962, COI: 1:CAS:528:DyaK1cXlsValsbk%3D
-
Doolittle WF: You are what you eat: a gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes. Trends Genet. 1998, 14: 307-311. 10.1016/S0168-9525(98)01494-2. DOI: 10.1016/S0168-9525(98)01494-2
-
(1998)
Trends Genet
, vol.14
, pp. 307-311
-
-
Doolittle, W.F.1
-
26
-
-
0021137599
-
The origin of the eukaryotic cell
-
PID: 11541973, COI: 1:CAS:528:DyaL2cXlvVKitbg%3D
-
Hartman H: The origin of the eukaryotic cell. Speculations Sci Technol. 1984, 7: 77-81.
-
(1984)
Speculations Sci Technol
, vol.7
, pp. 77-81
-
-
Hartman, H.1
-
27
-
-
0026282909
-
Early evolution and the origin of eukaryotes
-
PID: 1822277, COI: 1:CAS:528:DyaK38Xht1egtrw%3D
-
Sogin ML: Early evolution and the origin of eukaryotes. Curr Opin Genet Dev. 1991, 1: 457-463. 10.1016/S0959-437X(05)80192-3. DOI: 10.1016/S0959-437X(05)80192-3
-
(1991)
Curr Opin Genet Dev
, vol.1
, pp. 457-463
-
-
Sogin, M.L.1
-
28
-
-
0028203243
-
Was the nucleus the first endosymbiont?
-
PID: 8159671, COI: 1:CAS:528:DyaK2cXkslKht7s%3D
-
Lake JA, Rivera MC: Was the nucleus the first endosymbiont?. Proc Natl Acad Sci USA. 1994, 91: 2880-2881. DOI: 10.1073/pnas.91.8.2880
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 2880-2881
-
-
Lake, J.A.1
Rivera, M.C.2
-
29
-
-
0028891511
-
Use of spectral analysis to test hypotheses on the origin of pinnipeds
-
PID: 7877495, COI: 1:CAS:528:DyaK2MXivVahtbo%3D
-
Lento GM, Hickson RE, Chambers GK, Penny D: Use of spectral analysis to test hypotheses on the origin of pinnipeds. Mol Biol Evol. 1995, 12: 28-52. DOI: 10.1093/oxfordjournals.molbev.a040189
-
(1995)
Mol Biol Evol
, vol.12
, pp. 28-52
-
-
Lento, G.M.1
Hickson, R.E.2
Chambers, G.K.3
Penny, D.4
-
32
-
-
85182698420
-
-
DOE Joint Genome Institute. [http://www.jgi.doe.gov/JGI_microbial/html/index.html]
-
-
-
-
34
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
PID: 9254694, COI: 1:CAS:528:DyaK2sXlvFyhu7w%3D
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997, 25: 3389-3402. 10.1093/nar/25.17.3389. DOI: 10.1093/nar/25.17.3389
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
35
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
PID: 7984417, COI: 1:CAS:528:DyaK2MXitlSgu74%3D
-
Thompson JD, Higgins DG, Gibson TJ: CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22: 4673-4680. DOI: 10.1093/nar/22.22.4673
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
36
-
-
0036205377
-
TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing
-
PID: 11934758, COI: 1:CAS:528:DC%2BD38XivFKrsL0%3D
-
Schmidt HA, Strimmer K, Vingron M, von Haeseler A: TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics. 2002, 18: 502-504. 10.1093/bioinformatics/18.3.502. DOI: 10.1093/bioinformatics/18.3.502
-
(2002)
Bioinformatics
, vol.18
, pp. 502-504
-
-
Schmidt, H.A.1
Strimmer, K.2
Vingron, M.3
von Haeseler, A.4
-
42
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogenetic trees
-
PID: 11524383, COI: 1:STN:280:DC%2BD3MvotV2isw%3D%3D
-
Huelsenbeck JP, Ronquist F: MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics. 2001, 17: 754-755. 10.1093/bioinformatics/17.8.754. DOI: 10.1093/bioinformatics/17.8.754
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
43
-
-
0026691182
-
The rapid generation of mutation data matrices from protein sequences
-
PID: 1633570, COI: 1:CAS:528:DyaK38Xlt1Okt7w%3D
-
Jones DT, Taylor WR, Thornton JM: The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci. 1992, 8: 275-282.
-
(1992)
Comput Appl Biosci
, vol.8
, pp. 275-282
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
44
-
-
0030623948
-
SEALS: a system for easy analysis of lots of sequences
-
PID: 9322058, COI: 1:STN:280:DyaK2svmtlaktg%3D%3D
-
Walker DR, Koonin EV: SEALS: a system for easy analysis of lots of sequences. Proc Int Conf Intell Syst Mol Biol. 1997, 5: 333-339.
-
(1997)
Proc Int Conf Intell Syst Mol Biol
, vol.5
, pp. 333-339
-
-
Walker, D.R.1
Koonin, E.V.2
-
45
-
-
0034894278
-
PAL: an object-oriented programming library for molecular evolution and phylogenetics
-
PID: 11448888, COI: 1:CAS:528:DC%2BD3MXmtleltLw%3D
-
Drummond A, Strimmer K: PAL: an object-oriented programming library for molecular evolution and phylogenetics. Bioinformatics. 2001, 17: 662-663. 10.1093/bioinformatics/17.7.662. DOI: 10.1093/bioinformatics/17.7.662
-
(2001)
Bioinformatics
, vol.17
, pp. 662-663
-
-
Drummond, A.1
Strimmer, K.2
-
47
-
-
0002689695
-
The bioenergetics of the last common ancestor and the origin of the eukaryotic endomembrane systems
-
Hartman H, Matsuno K, (eds), World Scientific Publishing, Singapore
-
Gogarten JP, Kibak H: The bioenergetics of the last common ancestor and the origin of the eukaryotic endomembrane systems. In: The Origin and Evolution of the Cell. Edited by: Hartman H, Matsuno K. 1992, Singapore: World Scientific Publishing, 131-154.
-
(1992)
In: The Origin and Evolution of the Cell
, pp. 131-154
-
-
Gogarten, J.P.1
Kibak, H.2
-
48
-
-
0001919967
-
Origin of the cytoskeleton
-
Hartman H, Matsuno K, (eds), World Scientific Publishing, Singapore
-
Cavalier-Smith T: Origin of the cytoskeleton. In: The Origin and Evolution of the Cell. Edited by: Hartman H, Matsuno K. 1992, Singapore: World Scientific Publishing, 79-106.
-
(1992)
In: The Origin and Evolution of the Cell
, pp. 79-106
-
-
Cavalier-Smith, T.1
-
49
-
-
0014070709
-
On the origin of mitosing cells
-
PID: 11541392, COI: 1:STN:280:DC%2BD3MnlvF2ltw%3D%3D
-
Sagan L: On the origin of mitosing cells. J Theor Biol. 1967, 14 (3): 255-274. DOI: 10.1016/0022-5193(67)90079-3
-
(1967)
J Theor Biol
, vol.14
, Issue.3
, pp. 255-274
-
-
Sagan, L.1
-
50
-
-
0042307520
-
Gene transfer from organelles to the nucleus: Frequent and in big chunks
-
PID: 12861078, COI: 1:CAS:528:DC%2BD3sXlvVyis7Y%3D
-
Martin W: Gene transfer from organelles to the nucleus: Frequent and in big chunks. Proc Natl Acad Sci USA. 2003, 100: 8612-8614. 10.1073/pnas.1633606100. DOI: 10.1073/pnas.1633606100
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 8612-8614
-
-
Martin, W.1
|