Optimizing the nucleotide sequence of a meiotic recombination hotspot in Schizosaccharomyces pombe

Genetics

Volumn 169, Issue 4, 2005, Pages 1973-1983

  Steiner, Walter W ^a,b   Smith, Gerald R ^a  

^a Fred Hutchinson Cancer Research Center   (United States)

^b NIAGARA UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVATING TRANSCRIPTION FACTOR 1; NUCLEIC ACID BINDING PROTEIN; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR PCR1; UNCLASSIFIED DRUG;

ALLELE; ARTICLE; CONSENSUS SEQUENCE; CONTROLLED STUDY; GEL MOBILITY SHIFT ASSAY; GENE MUTATION; GENETIC RECOMBINATION; IN VITRO STUDY; MEIOSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN DNA BINDING; SCHIZOSACCHAROMYCES POMBE;

ALLELES; BASE SEQUENCE; BINDING SITES; CHROMOSOMES, FUNGAL; CROSSES, GENETIC; GENE EXPRESSION REGULATION, FUNGAL; GENES, FUNGAL; GENETIC TECHNIQUES; MEIOSIS; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; MUTAGENESIS, SITE-DIRECTED; MUTATION; POLYMERASE CHAIN REACTION; RECOMBINATION, GENETIC; SCHIZOSACCHAROMYCES; SCHIZOSACCHAROMYCES POMBE PROTEINS; SEQUENCE HOMOLOGY, NUCLEIC ACID;

EUKARYOTA; SCHIZOSACCHAROMYCES POMBE;

EID: 18844454008     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: 10.1534/genetics.104.039230     Document Type: Article

References (35)

1. AUSUBEL, F. M., R. BRENT, R. E. KINGSTON, D. D. MOORE, J. G. SEIDMAN et al. (Editors), 2003 Current Protocols in Molecular Biology. John Wiley & Sons, New York.
2. BÄHLER, J., J. Q. WU, M. S. LONGTINE, N. G. SHAH, A. MCKENZIE, 3RD et al., 1998 Heterologous modules for efficient and versatile PCR-based gene targeting in Schizosaccharomyces pombe. Yeast 14: 943-951.
3. BAKER, B. S., A. T. C. CARPENTER, M. S. ESPOSITO, R. E. ESPOSITO and L. SANDLER, 1976 The genetic control of meiosis. Annu. Rev. Genet. 10: 53-134.
4. BAUDAT, F., and A. NICOLAS, 1997 Clustering of meiotic double-strand breaks on yeast chromosome III. Proc. Natl. Acad. Sci. USA 94: 5213-5218.
5. BLUMENTAL-PERRY, A., D. ZENVIRTH, S. KLEIN, I. ONN and G. SIMCHEN, 2000 DNA motif associated with meiotic double-strand break regions in Saccharomyces cerevisiae. EMBO Rep. 1: 232-238.
6. ESPOSITO, R. E., and S. KLAPHOLTZ, 1981 Meiosis and ascospore development, pp. 211-287 in The Molecular Biology of the Yeast Saccharomyces: Life Cycle and Inheritance, edited by J. N. STRATHERN, E. W. JONES and J. R. BROACH. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
7. FAN, Q., F. XU and T. D. PETES, 1995 Meiosis-specific double-strand DNA breaks at the HIS4 recombination hot spot in the yeast Saccharomyces cerevisiae: control in cis and trans. Mol. Cell. Biol. 15: 1679-1688.
8. FARAH, J. A., E. HARTSUIKER, K.-I. MIZUNO, K. OHTA and G. R. SMITH, 2002 A 160-bp palindrome is a Rad50Asterisk inside circle signRad32-dependent mitotic recombination hotspotin Schizosaccharomyces pombe. Genetics 161: 461-468.
9. FOX, M. E., J. B. VIRGIN, J. METZGER and G. R. SMITH, 1997 Position-and orientation-independent activity of the Schizosaccharomyces pombe meiotic recombination hot spot M26. Proc. Natl. Acad. Sci. USA 94: 7446-7451.
10. FOX, M. E., T. YAMADA, K. OHTA and G. R. SMITH, 2000 A family of CRE-related DNA sequences with meiotic recombination hotspot activity in Schizosaccharomyces pombe. Genetics 156: 59-68.
11. GERTON, J. L., J. DERISI, R. SHROFF, M. LICHTEN, P. O. BROWN et al., 2000 Global mapping of meiotic recombination hotspots and coldspots in the yeast Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 97: 11383-11390.
12. GRIMM, C., P. SCHÄR, P. MUNZ and J. KOHLI, 1991 The strong ADH1 promoter stimulates mitotic and meiotic recombination at the ADE6 gene of Schizosaccharomyces pombe. Mol. Cell. Biol. 11: 289-298.
13. GUTZ, H., 1971 Site specific induction of gene conversion in Schizosaccharomyces pombe. Genetics 69: 317-337.
14. GUTZ, H., H. HESLOT, U. LEUPOLD and N. LOPRIENO, 1974 Schizosaccharomyces pombe, pp. 395-446 in Handbook of Genetics, edited by R. C. KING. Plenum Press, New York.
15. HARING, S. J., L. J. LAUTNER, J. M. COMERON and R. E. MALONE, 2004 A test of the CoHR motif associated with meiotic double-strand breaks in Saccharomyces cerevisiae. EMBO Rep. 5: 41-46.
16. KIRKPATRICK, D. T., Q. FAN and T. D. PETES, 1999a Maximal stimulation of meiotic recombination by a yeast transcription factor requires the transcription activation domain and a DNA-binding domain. Genetics 152: 101-115.
17. KIRKPATRICK, D. T., Y.-H. WANG, M. DOMINSKA, J. D. GRIFFITH and T. D. PETES, 1999b Control of meiotic recombination and gene expression in yeast by a simple repetitive DNA sequence that excludes nucleosomes. Mol. Cell. Biol. 19: 7661-7671.
18. KON, N., M. D. KRAWCHUK, B. G. WARREN, G. R. SMITH and W. P. WAHLS, 1997 Transcription factor Mts1/Mts2 (Atf1/Pcr1, Gad7/Pcr1) activates the M26 meiotic recombination hotspot in Schizosaccharomyces pombe. Proc. Natl. Acad. Sci. USA 94: 13756-13770.
19. MIZUNO, K., Y. EMURA, M. BAUR, J. KOHLI, K. OHTA et al., 1997 The meiotic recombination hot spot created by the single-base substitution ade6-M26 results in remodeling of chromatin structure in fission yeast. Genes Dev. 11: 876-886.
20. PÂQUES, F., and J. E. HABER, 1999 Multiple pathways of recombination induced by double-strand breaks in Saccharomyces cerevisiae. Microbiol. Mol. Biol. Rev. 63: 349-404.
21. PETES, T. D., 2001 Meiotic recombination hot spots and cold spots. Nat. Rev. Genet. 2: 360-370.
22. PONTICELLI, A. S., and G. R. SMITH, 1989 Meiotic recombination-deficient mutants of Schizosaccharomyces pombe. Genetics 123: 45-54.
23. PONTICELLI, A. S., and G. R. SMITH, 1992 Chromosomal context dependence of a eukaryotic recombinational hot spot. Proc. Natl. Acad. Sci. USA 89: 227-231.
24. SCHUCHERT, P., M. LANGSFORD, E. KÄSLIN and J. KOHLI, 1991 A specific DNA sequence is required for high frequency of recombination in the ade6 gene of fission yeast. EMBO J. 10: 2157-2163.
25. SHIOZAKI, K., and P. RUSSELL, 1996 Conjugation, meiosis, and the osmotic stress response are regulated by Spc1 kinase through Atf1 transcription factor in fission yeast. Genes Dev. 10: 2276-2288.
26. STAHL, F. W., 2002 Hot spot of recombination, pp. 976-977 in Encyclopedia of Genetics, edited by S. BRENNER and J. H. MILLER. Academic Press, San Diego.
27. STEINER, W. W., R. W. SCHRECKHISE and G. R. SMITH, 2002 Meiotic DNA breaks at the S. pombe recombination hotspot M26. Mol. Cell 9: 847-855.
28. SUN, H., D. TRECO, N. P. SCHULTES and J. W. SZOSTAK, 1989 Double-strand breaks at an initiation site for meiotic gene conversion. Nature 338: 87-90.
29. SZANKASI, P., W. D. HEYER, P. SCHUCHERT and J. KOHLI, 1988 DNA sequence analysis of the ade6 gene of Schizosaccharomyces pombe: wild-type and mutant alleles including the recombination hotspot allele ade6-M26. J. Mol. Biol. 204: 917-925.
30. TUERK, C., and L. GOLD, 1990 Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 249: 505-510.
31. VALLEJO, A. N., R. J. POGULIS and L. R. PEASE, 1995 Mutagenesis by PCR, pp. 603-612 in PCR Primer: A Laboratory Manual, edited by G. S. DVEKSLER. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
32. VIRGIN, J. B., J. METZGER and G. R. SMITH, 1995 Active and inactive transplacement of the M26 recombination hotspot in Schizosaccharomyces pombe. Genetics 141: 33-48.
33. WAHLS, W. P., and G. R. SMITH, 1994 A heteromeric protein that binds to a meiotic homologous recombination hotspot: correlation of binding and hotspot activity. Genes Dev. 8: 1693-1702.
34. WHITE, M. A., M. DOMINSKA and T. D. PETES, 1993 Transcription factors are required for the meiotic recombination hotspot at the HIS4 locus in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 90: 6621-6625.
35. YAMADA, T., K. MIZUNO, K. HIROTA, N. KON, W. P. WAHLS et al., 2004 Roles of histone acetylation and chromatin remodeling factor in a meiotic recombination hotspot. EMBO J. 23: 1792-1803.