β- and γ-turns in proteins revisited: A new set of amino acid turn-type dependent positional preferences and potentials

Journal of Biosciences

Volumn 25, Issue 2, 2000, Pages 143-156

  Guruprasad, K ^a   Rajkumar, S ^a  

^a CENTRE FOR DNA FINGERPRINTING AND DIAGNOSTICS   (India)

Author keywords

Amino acid potentials; Amino acid preferences; and y turns in proteins

Indexed keywords

AMINO ACID METABOLISM; ARTICLE; CONFORMATIONAL TRANSITION; CRYSTAL STRUCTURE; HYDROGEN BOND; MOLECULAR INTERACTION; PROTEIN PROTEIN INTERACTION; PROTEIN STABILITY; PROTEIN STRUCTURE; STRUCTURE ANALYSIS;

EID: 0033752859     PISSN: 02505991     EISSN: None     Source Type: Journal    
DOI: 10.1007/bf03404909     Document Type: Article

References (34)

1. Protein Data Bank archives of three-dimensional macromolecular structures
2. The Protein Data Bank: A computer-based archival file for macromolecular structures
3. Prediction of beta-turns
4. Classification and prediction of beta-turn types
5. Prediction of beta-turns
6. Prediction of protein conformation
7. Prediction of beta-turns
8. Turn prediction in proteins using a pattern-matching approach
9. Analysis of the accuracy and implications Of simple methods for predicting the secondary structure of globular proteins
10. Enlarged representative set of protein structures
11. PROMOTIF - A program to identify and analyze structural motifs in proteins
12. A revised set of potentials for beta-turn formation in proteins
13. Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
14. Chain reversals in proteins
15. Prediction of beta-turns in proteins using neural networks
16. One type of gamma-turn, rather than the other gives rise to chain-reversal in proteins
17. Situations of gamma-turns in proteins. Their relation to alpha-helices, beta-sheets and ligand binding sites
18. Stereochemical requirements for the existence of hydrogen bonds in beta-bends
19. Tertiary structural constraints on protein evolutionary diversity: Templates, key residues and structure prediction
20. Conformation of polypeptides and proteins
21. Refined crystal structure of carboxypeptidase A at 1.54 A resolution
22. The anatomy and taxonomy of protein structure
23. Prediction of chain turns in globular proteins on a hydrophobic basis
24. Turns in peptides and proteins
25. Prediction of the location and type of beta-turns in proteins using neural networks
26. Conformation of beta-hairpins in protein structures. A systematic classification with applications to modelling by homology, electron density fitting and protein engineering
27. Accommodating sequence changes in beta-hairpins in proteins
28. Protein Data Bank (PDB): Database of three-dimensional structural information of biological macromolecules
29. Structure of the SPXX motif
30. Intramolecularly hydrogen-bonded peptide conformations
31. Stereochemical criteria for polypeptides and proteins. V. Conformation of a system of three linked peptide units
32. A recurring two-hydrogen bond motif incorporating a serine or threonine residue is found both at alpha-helical N termini and in other situations
33. A natural grouping of motifs with an aspartate or asparagine residue forming two hydrogen bonds to residues ahead in sequence: Their occurrence at alpha-helical N termini and in other situations
34. Analysis and prediction of the different types of beta-turn in proteins