Phylogenetic analysis of Stylosanthes (Fabaceae) based on the internal transcribed spacer region (ITS) of nuclear ribosomal DNA

Plant Systematics and Evolution

Volumn 234, Issue 1-4, 2002, Pages 27-51

  Vander Stappen, Jacqueline ^a   De Laet, Jan ^b   Gama López, Susana ^c,d   Van Campenhout, Steven ^a   Volckaert, Guido ^a  

^a LABORATORY OF GENE TECHNOLOGY   (Belgium)

^b DIVISION OF INVERTEBRATE ZOOLOGY   (United States)

^c UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO   (Mexico)

^d NONE   (Mexico)

Author keywords

Allopolyploid; DNA sequence analysis; Fabaceae; Molecular phylogeny; Stylosanthes. Internal transcribed spacer region (ITS)

Indexed keywords

CELL NUCLEUS DNA; CHLOROPLAST DNA; INTERNAL TRANSCRIBED SPACER; RIBOSOME DNA;

ALLOPOLYPLOIDY; CHLOROPLAST; CLADISTICS; DIPLOIDY; DNA SEQUENCE; INTRON; PHYLOGENY; POLYPLOIDY;

ARACHIS; CHAPMANNIA; EMBRYOPHYTA; FABACEAE; STYLOSANTHES; STYLOSANTHES VISCOSA;

EID: 18744381538     PISSN: 03782697     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00606-002-0193-1     Document Type: Article

References (74)

1. Atchison E. (1949) Studies in the Leguminosae. IV. Chromosome numbers and geographical relationships of miscellaneous Leguminosae. J. Elisha Mitchell Sci. Soc. 65: 118-122.
2. Baldwin B. G., Sanderson M. J., Porter J. M., Wojciechowski M. F., Campbell C. S., Donoghue M. J. (1995) The ITS region of nuclear ribosomal DNA: A valuable source of evidence on angiosperm phylogeny. Ann. Missouri Bot. Gard. 82: 247-277.
3. Bentham G. (1859) Leguminosae: XXV. Stylosanthes. Fl. Bras. (Martius) 15: 88-93.
4. Beyra A.-M., Lavin M. (1999) Monograph of Pictetia (Leguminosae-Papilionoideae) and review of the Aeschynomeneae. Syst. Bot. Monogr. 56: 1-93.
5. Blake S. F. (1920) Nine new plants of the genus Stylosanthes. Proc. Biol. Soc. Wash. 33: 45-54.
6. Blake S. F. (1931) New plants from Guatemala and Honduras. Contr. U.S. Natl. Herb. 24: 4-5.
7. Bremer K. (1994) Branch support and tree stability. Cladistics 10: 295-304.
8. Burkart A. (1939) Estudios sistematicos sobre las Leguminosas - Hedisareas de la Republica Argentina y regiones adyacentes. Darwiniana 3: 232-261.
9. Burt R. L. (1984) Natural variation in Stylosanthes. In: Stace H. M., Edye L. A. (eds.) The Biology and Agronomy of Stylosanthes. Academic Press, London, pp. 103-123.
10. Burt R. L., Miller C. P. (1975) Stylosanthes - A source of pasture legumes. Trop. Grasslands 9: 117-123.
11. Cameron D. F. (1967) Chromosome number and morphology of some introduced Stylosanthes species. Austral. J. Agric. Res. 18: 375-379.
12. Chase M. W., Hills H. H. (1991) Silica gel: An ideal material for field preservation of leaf samples for DNA studies. Taxon 40: 215-220.
13. Coddington J., Scharff N. (1994) Problems with zero-length branches. Cladistics 10: 415-423.
14. Costa N. M. S., Ferreira M. B. (1984) Some Brazilian species of Stylosanthes. In: Stace H. M., Edye L. A. (eds.) The Biology and Agronomy of Stylosanthes. Academic Press, London, pp. 23-48.
15. Curtis M. D., Cameron D. F., Manners J. M. (1995) Molecular evidence that diploid Stylosanthes humilis and diploid Stylosanthes hamata are progenitors of allotetraploid. Stylosanthes hamata cv. Verano. Genome 38: 344-348.
16. Edye L. A., Burt R. L., Nicholson C. H. L., Williams R. J., Williams W. T. (1974) Classification of the Stylosanthes collection 1928-1969. CSIRO Austral. Div. Trop. Agron. Tech. Pap. 15: 1-28.
17. Farris J. S. (1970) Methods for computing Wagner trees. Syst. Zool. 19: 83-92.
18. Farris J. S. (1989) The retention index and the rescaled consistency index. Cladistics 5: 417-419.
19. Farris J. S., Albert V. A., Källersjö M., Lipscomb D., Kluge A. G. (1996) Parsimony jackknifing out-performs neighbour-joining. Cladistics 12: 99-124.
20. Ferreira M. B., Costa N. M. S. (1979) O genero Stylosanthes Sw. no Brasil. EPAMIG, Belo Horizonte, pp. 1-107.
21. Fitch W. M. (1971) Toward defining the course of evolution: Minimum change for a specific tree topology. Syst. Zool. 20: 406-416.
22. Franzke A., Mummenhoff K. (1999) Recent hybrid speciation in Cardamine (Brassicaceae) - Conversion of nuclear ribosomal ITS sequences in statu nascendi. Theor. Appl. Genet. 98: 831-834.
23. Gama-López, Vander Stappen J., Dávila P., Volckaert G. (2001) Systematic Study of the Genus Stylosanthes. Abstract in The Fourth International Legume Conference, Canberra, July 2001.
24. Gardener C. J. (1984) The dynamics of Stylosanthes pastures. In: Stace H. M., Edye L. A. (eds.) The Biology and Agronomy of Stylosanthes. Academic Press, London, pp. 333-357.
25. Gielly L., Yuan Y. M., Kupfer P., Taberlet P. (1996) Phylogenetic use of noncoding regions in the genus Gentiana L.: Chloroplast trnL (UAA) intron versus nuclear ribosomal internal transcribed spacer sequences. Molec. Phylogen. Evol. 5: 460-466.
26. Gillies A. C. M., Abbott R. J. (1996) Phylogenetic relationships in the genus Stylosanthes (Leguminosae) based upon chloroplast DNA variation. Plant Syst. Evol. 200: 193-211.
27. Glover B. J., Gillies A. C. M., Abbott R. J. (1994) Use of the polymerase chain reaction to investigate the delimitation of two agronomically important species of Stylosanthes (Aubl.) Sw. Bot. J. Scotland. 47: 83-96.
28. Goloboff P. A. (1993) Nona Version 2.0. Program and documentation distributed by the author. Tucumán, Argentina.
29. Hacker J. B., Clements R. J., Cameron D. F. (1988) Systematic botany and genetic improvement of tropical pastures. Acta Univ. Ups. Symb. Bot. Ups. XXVIII: 55-68.
30. Hamby R. K., Zimmer E. A. (1992) Ribosomal RNA as a phylogenetic tool in plant systematics. In: Soltis P. S., Soltis D. E., Doyle J. J. (eds.) Molecular Systematics of Plants. Chapman and Hall, New York London, pp. 50-91.
31. Hassler E. (1919) Ex herbario Hassleriano: Novitates paraguarienses. XXIII. Repert. Spec. Nov. Regni Veg. 16: 220-224.
32. Hillis D. M., Dixon M. T. (1991) Ribosomal DNA: Molecular evolution and phylogenetic inference. Quart. Rev. Biol. 66: 411-446.
33. Jansen P. I., Edye L. A. (1996) Variation within Stylosanthes sp. aff. scabra and comparison with its closest allies, S. scabra and S. hamata. Austral. J. Agric. Res. 47: 985-996.
34. Kállersjó M., Farris J. S., Kluge A. G., Bult C. (1992) Skewness and permutation. Cladistics 8: 275-287.
35. Khudrathulla M. D., Jagannath M. S. (1998) Biocontrol of ixodid ticks by forage legume Stylosanthes scabra (Vogel). Indian J. Anim. Sci. 68: 428-430.
36. Kim K. J., Jansen R. K. (1994) Comparisons of phylogenetic hypotheses among different data sets in dwarf dandelions (Krigia): Additional information from internal transcribed spacer sequences of nuclear ribosomal DNA. Plant Syst. Evol. 190: 157-185.
37. Kirkbride J. H., Kirkbride C. G. (1987) Typification of Stylosanthes (Leguminosae) and its sections. Taxon 36: 455-458.
38. Kluge A. G., Farris J. S. (1969) Quantitative phyletics and the evolution of the anurans. Syst. Zool. 18: 1-32.
39. Lavin M., Pennington R. T., Klitgaard B. B., Sprent J. I., de Lima H. C., Gasson P. E. (2001) The dalbergioid legumes (Fabaceae): Delimitation of a pantropical monophyletic clade. Amer. J. Bot. 88: 503-533.
40. Liu C. J. (1997) Geographical distribution of genetic variation in Stylosanthes scabra revealed by RAPD. Euphytica 98: 21-27.
41. Liu C. J., Musial J. M. (1997) Stylosanthes sp. aff. scabra: A putative diploid progenitor of Stylosanthes scabra (Fabaceae). Plant Syst. Evol. 208: 99-105.
42. Liu C. J., Musial J. M., Thomas B. D. (1999) Genetic relationships among Stylosanthes species revealed by RFLP and STS analyses. Theor. Appl. Genet. 99: 1179-1186.
43. 't Mannetje L. (1977) A revision of varieties of Stylosanthes guianensis (Aubl.) Sw. Austral. J. Bot. 25: 347-362.
44. 't Mannetje L. (1984) Considerations on the taxonomy of the genus Stylosanthes. In: Stace H. M., Edye L. A. (eds.) The Biology and Agronomy of Stylosanthes. Academic Press, London, pp. 1-21.
45. Mohlenbrock R. H. (1958) A revision of the genus Stylosanthes. Ann. Missouri Bot. Gard. 44: 299-351.
46. Mohlenbrock R. H. (1960) Recent studies in the leguminous genus Stylosanthes. Rhodora 62: 340-343.
47. Mohlenbrock R. H. (1963) Further considerations in Stylosanthes (Leguminosae). Rhodora 65: 245-258.
48. Nixon K. C. (1999) Winclada (BETA) Version 0.9.9. Published by the author, Ithaca, NY.
49. Nooteboom P. (1960) Stylosanthes Swartz. Reinwardtia 5: 446-450.
50. O'Kane Jr. S. L., Schaal B. A., Al-Shehbaz I. A. (1996) The origins of Arabidopsis suecica (Brassicaceae) as indicated by nuclear rDNA sequences. Syst. Bot. 21: 559-566.
51. Raven P. H., Polhill R. M. (1981) Biogeography of the Leguminosae. In: Polhill R. M., Raven P. H. (eds.) Advances in Legume Systematics: Part 1. Royal Botanic Gardens, Kew, pp. 27-34.
52. Rudd V. E. (1981) Aeschynomeneae. In: Polhill R. M., Raven P. H. (eds.) Advances in Legume Systematics. Royal Botanic Gardens, Kew, pp. 347-354.
53. Sang T., Crawford D., J., Stuessy T. F. (1995) Documentation of reticulate evolution in peonies (Paeonia) using internal transcribed spacer sequences of nuclear ribosomal DNA: Implications for biogeography and concerted evolution. Proc. Natl. Acad. Sci. USA 92: 68136817.
54. Sawkins M. C. (1999) Geographical and Genetic Studies of Stylosanthes Sw. Species. Ph.D. Dissertation, University of Birmingham, Birmingham.
55. Stace H. M., Cameron D. F. (1984) Cytogenetics and the evolution of Stylosanthes. In: Stace H. M., Edye L. A. (eds.) The Biology and Agronomy of Stylosanthes. Academic Press, London, pp. 49-72.
56. Stace H. M., Cameron D. F. (1987) Cytogenetic review of taxa in Stylosanthes hamata sensu lato. Trop. Grasslands 21: 182-188.
57. Swartz O. (1788). Prod. Veg. Ind. Occ. 108.
58. Taubert P. (1891) Monographie der Gattung Stylosanthes. Verh. Bot. Vereins Prov. Brandenburg. 32: 1-34.
59. Thomas D. (1984) Global ventures in Stylosanthes I. South America. In: Stace H. M., Edye L. A. (eds.) The Biology and Agronomy of Stylosanthes. Academic Press, London, pp. 451-466.
60. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G. (1997) The Clustal X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl. Acids Res. 24: 4876-4882.
61. Vander Stappen J., Van Campenhout S., Gama-López S., Volckaert G. (1998) Sequencing of the internal transcribed spacer region ITS1 as a molecular tool detecting variation in the Stylosanthes guianensis species complex. Theor. Appl. Genet. 96: 869-877.
62. Vander Stappen J. (1999) Development of Molecular Markers for Screening Genetic Diversity in the Tropical Legume Genus Stylosanthes. Ph.D. Dissertation, Katholieke Universiteit Leuven, Leuven.
63. Vander Stappen J., Volckaert G. (1999) Molecular characterization and classification of S. mexicana, S. macrocarpa, S. seabrana, and S. fruticosa by DNA sequence analysis of two chloroplast regions. DNA Seq. 10: 199-202.
64. Vander Stappen J., Weltjens I., Munaut F., Volckaert G. (1999a) Inter-specific and progeny relationships in the genus Stylosanthes inferred from chloroplast DNA sequence variation. C. R. Acad. Sci. III. Life Sci. 322: 481-490.
65. Vander Stappen J., Weltjens I., Van Campenhout S., Volckaert G. (1999b) Genetic relationships among Stylosanthes species as revealed by sequence-tagged site markers. Theor. Appl. Genet. 98: 1054-1062.
66. Vander Stappen J., Weltjens I., Gama-López S., Volckaert G. (2000) Genetic diversity in Mexican Stylosanthes humilis as revealed by AFLP, compared to the variability of S. humilis accessions from South American origin. Euphytica 113: 145-154.
67. Vanni R. (1987) Recuentos cromosomicos en Zornia, Stylosanthes y Desmodium (Leguminosae). Bonplandia 6: 39-43.
68. Vieira M. L. C., de Aguiar-Perecin M. L. R., Martins P. S. (1993) A cytotaxonomic study in twelve Brazilian taxa of Stylosanthes Sw., Leguminosae. Cytologia 58: 305-311.
69. Vogel J. R. T. (1838) Stylosanthes. Linnaea 12: 6371.
70. Volkov R. A., Borisjuk N. V., Panchuk I. I., Schweizer D., Hemleben V. (1999) Elimination and rearrangement of parental rDNA in the allotetraploid Nicotiana tabacum. Molec. Biol. Evol. 16: 311-320.
71. Wagner A., Blackstone N., Cartwright P., Dick M., Misof B., Snow P., Wagner G. P., Bartel J., Murtha M., Pendleton J. (1994) Surveys of gene families using polymerase chain reaction: PCR selection and PCR drift. Syst. Biol. 43: 250-261.
72. Wendel J. F., Schnabel A., Seelanan T. (1995) Bidirectional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium). Proc. Natl. Acad. Sci. USA 92: 280-284.
73. White T. J., Bruns T., Lee S., Taylor J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M. A., Gelfand D. H., Sninsky J. J., White T. J. (eds.) PCR Protocols: A Guide to Methods and Applications. Academic Press, New York, pp. 315-322.
74. Williams R. J., Reid R., Schultze-Kraft R., Costa N. M. S., Thomas B. D. (1984) Natural distribution of Stylosanthes. In: Stace H. M., Edye L. A. (eds.) The Biology and Agronomy of Stylosanthes. Academic Press, London, pp. 73-101.