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Volumn 44, Issue 19, 2005, Pages 7125-7130

DNA-based biosensor for monitoring pH in vitro and in living cells

Author keywords

[No Author keywords available]

Indexed keywords

BIOMARKERS; CELL CULTURE; DNA; ENERGY TRANSFER; FLUORESCENCE; MICROSCOPIC EXAMINATION; OLIGOMERS; PH EFFECTS; RESONANCE;

EID: 18544379460     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi0476782     Document Type: Article
Times cited : (85)

References (28)
  • 1
    • 0032528677 scopus 로고    scopus 로고
    • Adapting selected nucleic acid ligands (aptamers) to biosensors
    • Potyrailo, R. A., Conrad R. C., Ellington A. D., and Hieftje G. M. (1998) Adapting selected nucleic acid ligands (aptamers) to biosensors, Anal. Chem. 70, 3419-3425.
    • (1998) Anal. Chem. , vol.70 , pp. 3419-3425
    • Potyrailo, R.A.1    Conrad, R.C.2    Ellington, A.D.3    Hieftje, G.M.4
  • 3
    • 0037377340 scopus 로고    scopus 로고
    • Rube Goldberg goes (ribo)nuclear? Molecular switches and sensors made from RNA
    • Silverman, S. K. (2003) Rube Goldberg goes (ribo)nuclear? Molecular switches and sensors made from RNA, RNA 9, 377-383.
    • (2003) RNA , vol.9 , pp. 377-383
    • Silverman, S.K.1
  • 4
    • 0034703715 scopus 로고    scopus 로고
    • Kinetic property of bulged helix formation: Analysis of kinetic behavior using nearest-neighbor parameters
    • Ohmichi, T., Nakamuta, N., Yasuda, K., and Sugimoto, N. (2000) Kinetic property of bulged helix formation: Analysis of kinetic behavior using nearest-neighbor parameters, J. Am. Chem. Soc. 122, 11286-11294.
    • (2000) J. Am. Chem. Soc. , vol.122 , pp. 11286-11294
    • Ohmichi, T.1    Nakamuta, N.2    Yasuda, K.3    Sugimoto, N.4
  • 5
    • 0035943032 scopus 로고    scopus 로고
    • Stabilization factors affecting duplex formation of peptide nucleic acid with DNA
    • Sugimoto, N., Satoh, N., Yasuda, K. and Nakano, S. (2001) Stabilization factors affecting duplex formation of peptide nucleic acid with DNA, Biochemistry 40, 8444-8451.
    • (2001) Biochemistry , vol.40 , pp. 8444-8451
    • Sugimoto, N.1    Satoh, N.2    Yasuda, K.3    Nakano, S.4
  • 6
    • 0037019539 scopus 로고    scopus 로고
    • Long RNA dangling end has large energetic contribution to duplex stability
    • Ohmichi, T., Nakano, S., Miyoshi, D., and Sugimoto, N. (2002) Long RNA dangling end has large energetic contribution to duplex stability, J. Am. Chem. Soc. 124, 10367-10372.
    • (2002) J. Am. Chem. Soc. , vol.124 , pp. 10367-10372
    • Ohmichi, T.1    Nakano, S.2    Miyoshi, D.3    Sugimoto, N.4
  • 7
    • 0037126694 scopus 로고    scopus 로고
    • Molecular crowding regulates the structural switch of the DNA G-quadruplex
    • Miyoshi, D., Nakao, A, and Sugimoto, N. (2002) Molecular crowding regulates the structural switch of the DNA G-quadruplex, Biochemistry 41, 15017-15024.
    • (2002) Biochemistry , vol.41 , pp. 15017-15024
    • Miyoshi, D.1    Nakao, A.2    Sugimoto, N.3
  • 8
    • 0038682675 scopus 로고    scopus 로고
    • Large stabilization of a DNA duplex by the deoxyadenosine derivatives tethering an aromatic hydrocarbon group
    • Nakano, S., Uotani, Y., Nakashima, S., Anno, Y., Fujii, M., and Sugimoto, N. (2003) Large stabilization of a DNA duplex by the deoxyadenosine derivatives tethering an aromatic hydrocarbon group, J. Am. Chem. Soc. 125, 8086-8087.
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 8086-8087
    • Nakano, S.1    Uotani, Y.2    Nakashima, S.3    Anno, Y.4    Fujii, M.5    Sugimoto, N.6
  • 9
    • 0141885309 scopus 로고    scopus 로고
    • Structural competition involving G-quadruplex DNA and its complement
    • Li, W., Miyoshi, D., Nakano, S., and Sugimoto, N. (2003) Structural competition involving G-quadruplex DNA and its complement, Biochemistry 42, 11736-11744.
    • (2003) Biochemistry , vol.42 , pp. 11736-11744
    • Li, W.1    Miyoshi, D.2    Nakano, S.3    Sugimoto, N.4
  • 10
    • 0037465559 scopus 로고    scopus 로고
    • Immobilized small deoxyribozyme to distinguish RNA secondary structures
    • Okumoto, Y., Tanabe, Y., and Sugimoto, N. (2003) Immobilized small deoxyribozyme to distinguish RNA secondary structures, Biochemistry 42, 2158-2165.
    • (2003) Biochemistry , vol.42 , pp. 2158-2165
    • Okumoto, Y.1    Tanabe, Y.2    Sugimoto, N.3
  • 11
    • 0037176876 scopus 로고    scopus 로고
    • 2+ -dependent deoxyribozyme in relation to its RNA cleavage function
    • 2+ -dependent deoxyribozyme in relation to its RNA cleavage function, Biochemistry 41, 2769-2773.
    • (2002) Biochemistry , vol.41 , pp. 2769-2773
    • Okumoto, Y.1    Ohmichi, T.2    Sugimoto, N.3
  • 12
    • 0034786272 scopus 로고    scopus 로고
    • Intragastric pH regulates conversion from net acid to net alkaline secretion by the rat stomac
    • Coskun, T., Chu, S., and Montrose, M. H. (2001) Intragastric pH regulates conversion from net acid to net alkaline secretion by the rat stomac, Am. J. Physiol. 281, G870-G877.
    • (2001) Am. J. Physiol. , vol.281
    • Coskun, T.1    Chu, S.2    Montrose, M.H.3
  • 13
    • 0021132366 scopus 로고
    • + exchange in human neutrophils: Mechanism of activation by chemotactic factors
    • + exchange in human neutrophils: Mechanism of activation by chemotactic factors, Biochem. Biophys. Res. Commun. 122, 755-762.
    • (1984) Biochem. Biophys. Res. Commun. , vol.122 , pp. 755-762
    • Grinstein, S.1    Furuya, W.2
  • 14
    • 0021744238 scopus 로고
    • Phorbol ester and diacylglycerol mimic growth factors in raising cytoplasmic pH
    • Moolenaar, W. H., Tertoolen, L. G. J., and de Laat, S. W. (1984) Phorbol ester and diacylglycerol mimic growth factors in raising cytoplasmic pH, Nature 312, 371-374.
    • (1984) Nature , vol.312 , pp. 371-374
    • Moolenaar, W.H.1    Tertoolen, L.G.J.2    De Laat, S.W.3
  • 16
    • 0033776271 scopus 로고    scopus 로고
    • Changes in intramitochondrial and cytosolic pH: Early events that modulate caspase activation during apoptosis
    • Matsuyama, S., Llopis, J., Deveraux, Q. L., Tsien, R. Y., and Reed, J. C. (2000) Changes in intramitochondrial and cytosolic pH: Early events that modulate caspase activation during apoptosis, Nat. Cell Biol. 2, 318-325.
    • (2000) Nat. Cell Biol. , vol.2 , pp. 318-325
    • Matsuyama, S.1    Llopis, J.2    Deveraux, Q.L.3    Tsien, R.Y.4    Reed, J.C.5
  • 17
    • 0028210773 scopus 로고
    • 2+, and volume inside cultured adult rabbit cardiac myocytes during chemical hypoxia: A multiparameter digitized confocal microscopic study
    • 2+, and volume inside cultured adult rabbit cardiac myocytes during chemical hypoxia: A multiparameter digitized confocal microscopic study, Biophys. J. 66, 942-952.
    • (1994) Biophys. J. , vol.66 , pp. 942-952
    • Chacon, E.1    Reece, J.M.2    Nieminen, A.L.3    Zahrebelski, G.4    Herman, B.5    Lemasters, J.J.6
  • 18
    • 0032499784 scopus 로고    scopus 로고
    • Measurement of cytosolic, mitochondrial, and Golgi pH in single living cells with green fluorescent proteins
    • Llopis, J., McCaffery, J. M., Miyawaki, A., Farquhar, M. G., and Tsien, R. Y. (1998) Measurement of cytosolic, mitochondrial, and Golgi pH in single living cells with green fluorescent proteins, Proc. Natl. Acad. Sci. U.S.A. 95, 6803-6808.
    • (1998) Proc. Natl. Acad. Sci. U.S.A. , vol.95 , pp. 6803-6808
    • Llopis, J.1    McCaffery, J.M.2    Miyawaki, A.3    Farquhar, M.G.4    Tsien, R.Y.5
  • 19
    • 0028917643 scopus 로고
    • Intracellular alkalinization suppresses lovastatin-induced apoptosis in HL-60 cells through the inactivation of a pH-dependent endonuclease
    • Pérez-Sala, D., Collado-Escobar, D., and Mollinedo, F. (1995) Intracellular alkalinization suppresses lovastatin-induced apoptosis in HL-60 cells through the inactivation of a pH-dependent endonuclease, J. Mol. Biol. 270, 6235-6242.
    • (1995) J. Mol. Biol. , vol.270 , pp. 6235-6242
    • Pérez-Sala, D.1    Collado-Escobar, D.2    Mollinedo, F.3
  • 20
    • 0035822654 scopus 로고    scopus 로고
    • pH and cation effects on the properties of parallel pyrimidine motif DNA triplexes
    • Sugimoto, N., Wu, P., Hara, H., and Kawamoto, Y. (2001) pH and cation effects on the properties of parallel pyrimidine motif DNA triplexes, Biochemistry 40, 9396-9405.
    • (2001) Biochemistry , vol.40 , pp. 9396-9405
    • Sugimoto, N.1    Wu, P.2    Hara, H.3    Kawamoto, Y.4
  • 21
    • 0037173552 scopus 로고    scopus 로고
    • Effect of divalent cations and cytosine protonation on thermodynamic properties of intermolecular DNA double and triple helices
    • Wu, P., Kawamoto, Y., Kara, H., and Sugimoto, N. (2002) Effect of divalent cations and cytosine protonation on thermodynamic properties of intermolecular DNA double and triple helices, J. Inorg. Biochem. 91, 277-285.
    • (2002) J. Inorg. Biochem. , vol.91 , pp. 277-285
    • Wu, P.1    Kawamoto, Y.2    Kara, H.3    Sugimoto, N.4
  • 22
    • 0031001894 scopus 로고    scopus 로고
    • Structure and dynamics of disulfide cross-linked DNA triple helices
    • Osborne, S. E., Cain, R. J., and Glick, G. D. (1997) Structure and dynamics of disulfide cross-linked DNA triple helices, J. Am. Chem. Soc. 119, 1171-1182.
    • (1997) J. Am. Chem. Soc. , vol.119 , pp. 1171-1182
    • Osborne, S.E.1    Cain, R.J.2    Glick, G.D.3
  • 23
    • 0034813846 scopus 로고    scopus 로고
    • Aptamer-based folding fluorescent sensor for cocaine
    • Stojanovic, M. N., de Prada, P., and Landry, D. W. (2001) Aptamer-based folding fluorescent sensor for cocaine, J. Am. Chem. Soc. 123, 4928-4931.
    • (2001) J. Am. Chem. Soc. , vol.123 , pp. 4928-4931
    • Stojanovic, M.N.1    De Prada, P.2    Landry, D.W.3
  • 25
    • 0025836381 scopus 로고
    • Coupling of sequential transitions in a DNA double hairpin: Energetics, ion binding, and hydration
    • Rentzeperis, D., Kharakoz, D. P., and Marky, L. A. (1991) Coupling of sequential transitions in a DNA double hairpin: Energetics, ion binding, and hydration, Biochemistry 30, 6276-6283.
    • (1991) Biochemistry , vol.30 , pp. 6276-6283
    • Rentzeperis, D.1    Kharakoz, D.P.2    Marky, L.A.3
  • 26
    • 0033117651 scopus 로고    scopus 로고
    • Extremely high and specific activity of DNA enzymes in cells with a Philadelphia chromosome
    • Warashina M., Kuwabara T., Nakamatsu Y., and Taira K. (1999) Extremely high and specific activity of DNA enzymes in cells with a Philadelphia chromosome, Chem. Biol. 6, 237-250.
    • (1999) Chem. Biol. , vol.6 , pp. 237-250
    • Warashina, M.1    Kuwabara, T.2    Nakamatsu, Y.3    Taira, K.4
  • 27
    • 0033119834 scopus 로고    scopus 로고
    • Interdependent regulation of intracellular acidification and SHP-1 in apoptosis
    • Thangaraju, M., Kamal Sharma, K., Liu, D., Shen, Shi-H., and Srikant, C. B. (1999) Interdependent regulation of intracellular acidification and SHP-1 in apoptosis, Cancer Res. 50, 1648-1654.
    • (1999) Cancer Res. , vol.50 , pp. 1648-1654
    • Thangaraju, M.1    Kamal Sharma, K.2    Liu, D.3    Shen, S.-H.4    Srikant, C.B.5
  • 28
    • 0031885535 scopus 로고    scopus 로고
    • Green fluorescent protein as a noninvasive intracellular pH indicator
    • Kneen, M., Farinas, J., Li, Y, and Verkman, A. S. (1998) Green fluorescent protein as a noninvasive intracellular pH indicator, Biophys. J. 74, 1591-1599.
    • (1998) Biophys. J. , vol.74 , pp. 1591-1599
    • Kneen, M.1    Farinas, J.2    Li, Y.3    Verkman, A.S.4


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