Single nucleotide polymorphism genotyping by on-line liquid chromatography-mass spectrometry in forensic science of the Y-chromosomal locus M9

Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences

Volumn 782, Issue 1-2, 2002, Pages 89-97

  Berger, Burkhard ^a   Hölzl, Georg ^a   Oberacher, Herbert ^a   Niederstätter, Harald ^a   Huber, Christian G ^b   Parson, Walther ^a  

^a UNIVERSITY OF INNSBRUCK   (Austria)

^b SAARLAND UNIVERSITY   (Germany)

Author keywords

Genotyping; Single nucleotide polymorphism; Y chromosomal locus M9

Indexed keywords

CHROMOSOMES; DNA; ENZYMES; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; PURIFICATION;

FORENSIC SCIENCES; GEL ELECTROPHORETIC ANALYSIS;

BIOMEDICAL ENGINEERING;

ACETONITRILE; CARBONIC ACID DERIVATIVE; STYRENE DERIVATIVE; PRIMER DNA;

ACCURACY; ALLELE; AMPLICON; BASE PAIRING; CONTROLLED STUDY; DEVICE; DNA EXTRACTION; FORENSIC SCIENCE; GEL ELECTROPHORESIS; GENE LOCUS; GENETIC VARIABILITY; GENOTYPE; HUMAN; INTERMETHOD COMPARISON; MALE; MASS SPECTROMETRY; ONLINE SYSTEM; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; REVERSED PHASE HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; REVIEW; SINGLE NUCLEOTIDE POLYMORPHISM; Y CHROMOSOME; ARTICLE; ELECTROSPRAY MASS SPECTROMETRY; FORENSIC MEDICINE; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; METHODOLOGY; NUCLEOTIDE SEQUENCE;

BASE SEQUENCE; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; CHROMOSOMES, HUMAN, Y; DNA PRIMERS; FORENSIC MEDICINE; GENOTYPE; HUMANS; POLYMORPHISM, SINGLE NUCLEOTIDE; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION;

EID: 1842859066     PISSN: 15700232     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1570-0232(02)00694-3     Document Type: Article

References (34)

1. Brookes A.J. Gene. 234:1999;177.
2. Nature. 409:2001;860.
3. Venter J.C., et al. Science. 291:2001;1304.
4. Gill P. Int. J. Leg. Med. 114:2001;204.
5. Syvänen A.-C. Nat. Rev. Genet. 2:2001;930.
6. Bray M.S., Boerwinkle E., Doris P.A. Hum. Mutat. 17:2001;296.
7. Gut I.G. Hum. Mutat. 17:2001;475.
8. Ye F., Li M.-S., Taylor J.D., Nguyen Q., Colton H.M., Casey W.M., Wagner M., Weiner M.P., Chen J. Hum. Mutat. 17:2001;305.
9. Parsons T.J., Coble M.D. Croat. Med. J. 42:2001;304.
10. Jobling M.A. Forensic Sci. Int. 118:2001;158.
11. Shen P., Wang F., Underhill P.A., Franco C., Yang W.H., Roxas A., Sung R., Lin A.A., Hyman R.W., Vollrath D., Davis R.W., Cavalli-Sforza L.L., Oefner P. Proc. Natl. Acad. Sci. USA. 97:2000;7354.
12. Rosser Z.H., Zerjal T., Hurles M.E., Adojaan M., Alavantic D., Amorim A., Amos W., Armenteros M., Arroyo E., Barbujani G., Beckman G., Beckman L., Bertranpetit J., Bosch E., Bradley D.G., Brede G., Cooper G., Côrte-Real H.B.S.M., de Knijff P., Decorte R., Dubrova Y.E., Evgrafov O., Gilissen A., Glisic S., Gölge M., Hill E.W., Jeziorowska A., Kalaydjieva L., Kayser M., Kivisild T., Kravchenko S.A., Krumina A., Kuinskas V., Lavinha J., Livshits L.A., Malaspina P., Maria S., McElreavey P., Meitinger T.A., Mikelsaar A., J Mitchell R., Nafa K., Nicholson J., Nørby S., Pandya A., Parik J., Patsalis P.C., Pereira L., Peterlin B., Pielberg G., Prata M.J., Previderé C., Roewer L., Rootsi S., Rubinsztein D.C., Saillard J., Santos F.R., Stefanescu G., Sykes B.C., Tolun A., Villems R., Tyler-Smith C., Jobling M.A. Am. J. Hum. Genet. 67:2000;1526.
13. Underhill P.A., Passarino G., Lin A.A., Shen P., Lahr M.M., Foley R.A., Oefner P.J., Cavalli-Sforza L.L. Ann. Hum. Genet. 65:2001;43.
14. Underhill P.A., Shen P., Lin A.A., Lin L., Passarino G., Yang W.H., Kauffman E., Bonné-Tamir B., Bertranpetit J., Francalacci P., Ibrahim M., Jenkins T., Kidd J.R., Mehdi S.Q., Seielstad M.T., Wells R.S., Piazza A., Davis R.W., Feldman M.-W., Cavalli-Sforza L.L., Oefner P.J. Nature Genet. 26:2000;358.
15. Jin L., Su B. Nature Rev. Genetics. 1:2000;126.
16. Hurles M.E., Irven C., Nicholson J., Taylor P.G., Santos F.R., Loughlin J., Jobling M.A., Sykes B.C. Am. J. Hum. Genet. 63:1998;1793.
17. Ke Y., Su B., Song X., Lu D., Chen L., Li H., Qi C., Marzuki S., Deka R., Underhill P., Xiao C., Shriver M., Lell J., Wallace D., Wells R.S., Seielstad M., Oefner P., Zhu D., Jin J., Huang W., Chakraborty R., Chen Z., Jin L. Science. 292:2001;1151.
18. Hurles M.E., Jobling M.A. Mol. Ecol. 10:2001;1599.
19. Jin L., Underhill P.A., Doctor V., Davis R.W., Shen P., Cavalli-Sforza L.L., Oefner P.J. Proc. Natl. Acad. Sci. USA. 96:1999;3796.
20. Underhill P.A., Jin L., Lin A.A., Mehdi S.Q., Jenkins T., Vollrath D., Davis R.W., Cavalli-Sforza L.L., Oefner P.J. Genome Res. 7:1997;996.
21. Haff L.A., Smirnov I.P. Genome Res. 7:1997;378.
22. Krahmer M.T., Walters J.J., Fox K.F., Fox A., Creek K.E., Pirisi L. Anal. Chem. 72:2000;4033.
23. Walters J.J., Muhammad W., Fox K.F., Fox A., Xie D., Creek K.E., Pirisi L. Rapid Commun. Mass Spectrom. 15:2001;1752.
24. Paracchini S., Arredi B., Chalk R., Tyler-Smith C. Nucleic Acids Res. 30:2002;e27.
25. Oberacher H., Krajete A., Parson W., Huber C.G. J. Chromatogr. A. 893:2000;23.
26. Oberacher H., Parson W., Mühlmann R., Huber C.G. Anal. Chem. 73:2001;5109.
27. Premstaller A., Oberacher H., Huber C.G. Anal. Chem. 72:2000;4386.
28. Parsons B.L., Heflich R.H. Mutat. Res. 387:1997;97.
29. Bayer E., Bauer T., Schmeer K., Bleicher K., Maler M., Gaus H.J. Anal. Chem. 66:1994;3858.
30. Little D.P., Thannhauser T.W., McLafferty F.W. Proc. Natl. Acad. Sci. USA. 95:1995;2318.
31. Semino O., Passarino G., Oefner P.J., Lin A.A., Arbuuzova S., Beckmann L.E., De Benedictis G., Francalacci P., Kouvatsi A., Limborska S., Marcikiae M., Mika A., Mika B., Primorac D., Santachiara-Benerecetti A.S., Cavalli-Sforza L.L., Underhill P.A. Science. 290:2000;1155.
32. Premstaller A., Xiao W., Oberacher H., O'Keefe M., Stern D., Willis T., Huber C.G., Oefner P.J. Genome Res. 11:2001;1944.
33. Sauer S., Lechner D., Berlin K., Lehrach H., Escary J.-L., Fox N., Gut I.G. Nucleic Acids Res. 28:2000;13.
34. Null A.P., Hannis J.C., Muddiman D.C. Analyst. 125:2000;619.