Mcg in 2030: New techniques for atomic position determination of immune complexes

Journal of Molecular Recognition

Volumn 15, Issue 5, 2002, Pages 297-305

  Hanson, B Leif ^a   Bunick, Gerard J ^b   Harp, Joel M ^a,c   Edmundson, Allen B ^d  

^a UNIVERSITY OF TENNESSEE   (United States)

^b OAK RIDGE NATIONAL LABORATORY   (United States)

^c UNIVERSITY OF VIRGINIA HEALTH SYSTEM   (United States)

^d OKLAHOMA MEDICAL RESEARCH FOUNDATION   (United States)

Author keywords

Cryocrystallography; Helium; Light chain dimer; Neutrons

Indexed keywords

DIMER; IMMUNOGLOBULIN LIGHT CHAIN; BENCE JONES PROTEIN; HELIUM; IMMUNOGLOBULIN LAMBDA CHAIN; NITROGEN;

AMYLOIDOSIS; ANTIGEN ANTIBODY COMPLEX; COMBINATORIAL CHEMISTRY; DIFFRACTION; IMMUNOGLOBULIN STRUCTURE; MULTIPLE MYELOMA; X RAY ANALYSIS; CHEMICAL STRUCTURE; CHEMISTRY; COMPARATIVE STUDY; DIMERIZATION; ELECTRICITY; FREEZING; HUMAN; IMMUNOLOGY; NEUTRON DIFFRACTION; REVIEW; SYNCHROTRON; X RAY CRYSTALLOGRAPHY;

AMYLOIDOSIS; ANTIGEN-ANTIBODY COMPLEX; BENCE JONES PROTEIN; CRYSTALLOGRAPHY, X-RAY; DIMERIZATION; ELECTROSTATICS; FREEZING; HELIUM; HUMANS; IMMUNOGLOBULIN LAMBDA-CHAINS; MODELS, MOLECULAR; MOLECULAR STRUCTURE; MULTIPLE MYELOMA; NEUTRON DIFFRACTION; NITROGEN; SYNCHROTRONS;

EID: 1842846565     PISSN: 09523499     EISSN: None     Source Type: Journal    
DOI: 10.1002/jmr.591     Document Type: Review

References (29)

1. Al-Lazikani B, Lesk AM, Chothia C. 1997. Standard conformations for the canonical structures of immunoglobulins. J. Mol. Biol. 273: 927-948.
2. Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE. 2000. The Protein Data Bank. Nucleic Acids Res. 28: 235-242.
3. Bourne PC, Ramsland PA, Shan L, Fan ZC, DeWitt CR, Shultz BB, Terzyan SS, Moomaw CR, Slaughter CA, Guddat LW, Edmundson AB. 2002. Three-dimensional structure of an immunoglobulin light-chain dimer with amyloidogenic properties. Acta Crystallogr. D58: 815-823.
4. Burmeister WP. 2000. Structural changes in a cryo-cooled protein crystal owing to radiation damage. Acta Crystallogr. D56: 328-341.
5. Daniels BV, Schoenborn BP, Korszun ZR. 1997. Myoglobin solvent structure at different temperatures. Acta Crystallogr. D53: 544-550.
6. Edmundson AB, Schiffer M, Ely KR, Wood MK. 1972. Structure of a λ-type Bence-Jones protein at 6 Å resolution. Biochemistry 11: 1822-1827.
7. Edmundson AB, Ely KR, Abola EE, Schiffer M, Panagiotopoulos N. 1975. Rotational allomerism and divergent evolution of domains in immunoglobulin light chains. Biochemistry 14: 3953-3961.
8. Edmundson AB, Ely KR, Herron JN, Cheson BD. 1987. The binding of opioid peptides to the Mcg light chain dimer: Flexible keys and adjustable locks. Mol. Immunol. 24: 915-935.
9. Edmundson AB, Harris DL, Fan Z-C, Guddat LW, Schley BT, Hanson BL, Tribbick G, Geysen HM. 1993. Principles and pitfalls in designing site-directed peptide ligands. Proteins Struct. Funct. Genet. 16: 246-267.
10. Ely KR, Girling RL, Schiffer M, Cunningham DE, Edmundson AB. 1973. Preparation and properties of crystals of a Bence-Jones dimer with mercury inserted into the interchain disulfide bond. Biochemistry 12: 4233-4237.
11. Gonzalez A, Nave C. 1994. Radiation damage in protein crystals at low temperature. Acta Crystallogr. D50: 874-877.
12. Habash J, Raftery J, Nuttall R, Price HJ, Wilkinson C, Kalb (Gilboa) AJ, Helliwell JR. 2000. Direct determination of the positions of the deuterium atoms of the bound water in concanavalin A by neutron Laue crystallography. Acta Crystallogr. D56: 541-550.
13. Hanson BL, Martin A, Harp JA, Parrish DA, Kirschbaum K, Bunick CG, Pinkerton AA, Bunick GJ. 1999. Use of an open-flow helium cryostat for macromolecular cryocrystallography. J. Appl. Crystallogr. 32: 814-820.
14. Hanson BL, Harp JM, Kirschbaum K, Parrish DA, Timm DE, Howard A, Pinkerton AA, Bunick GJ. 2001. Macromolecular data collection with cryogenic helium. J. Cryst. Growth 232: 536-544.
15. Hanson BL, Harp JM, Kirschbaum K, Schall CA, DeWitt K, Howard A, Pinkerton AA, Bunick GJ. 2002. Experiments testing the abatement of radiation damage in D-xylose isomerase crystals with cryogenic helium. J. Synch. Radiat. (in press).
16. Hanson BL, Harp JM, Bunick GJ. 2003. The well-tempered protein crystal: Annealing macromolecular crystals. Meth. Enzymol. (in press).
17. Hardie MJ, Kirschbaum K, Martin A, Pinkerton AA. 1998. An open-flow helium cryostat for single-crystal X-ray diffraction experiments. J. Appl. Crystallogr. 31: 815-817.
18. Harp JM, Timm DE, Bunick GJ. 1998. Macromolecular crystal annealing: Overcoming increased mosaicity associated with cryocrystallography. Acta Crystallogr. D54: 622-628.
19. Harris DL, King E, Ramsland PA, Edmundson AB. 2000. Binding of nascent collagen by amyloidogenic light chains and amyloid fibrillogenesis in monolayers of human fibrocytes. J. Mol. Recognit. 13: 198-212.
20. Hartwig G. 1998. Cryogenic properties of polymers. In Handbook of Cryogenic Engineering, Weisend JG II (ed.). Taylor and Francis: Philadelphia, PA.
21. Herron JN, He XM, Ballard DW, Blier PR, Pace PE, Bothwell AL, Voss EW JR, Edmundson AB. 1991. An autoantibody to single-stranded DNA: Comparison of the three-dimensional structures of the unliganded Fab and a deoxynucleotide-Fab complex. Proteins 11: 159-175.
22. Howard AJ. 1993. XENGEN and POLYDET: Crystallographic data processing software for the mid-90's. American Crystallographic Association Annual Meeting, Abstract C001.
23. Ravelli RB, McSweeney SM. 2000. The 'fingerprint' that X-rays can leave on structures. Struct. Fold. Des. 8: 315-328.
24. Ribaud L, Wu G, Zhang Y, Coppens P. 2001. A modified Pinkerton-type helium gas-flow system for high-accuracy data collection at the X3 SUNY synchrotron beamline at NSLS. J. Appl. Crystallogr. 34: 76-79.
25. Roussel A, Cambillau C. 1991. TURBO-FRODO. In Silicon Graphics Geometry Partners Directory. Silicon Graphics: Mountain View, CA. Available at: http://afmb.cnrs-mrs.fr/TURBO FRODO/
26. Teng T-Y, Moffat K. 1998. Cooling rates during flash cooling. J. Appl. Crystallogr. 31: 252-257.
27. Turner JE. 1992. Atoms, Radiation and Radiation Protection. McGraw-Hill: New York.
28. Weik M, Ravelli RB, Kryger G, McSweeney S, Raves ML, Harel M, Gros P, Silman I, Kroon J, Sussman JL. 2000. Specific chemical and structural damage to proteins produced by synchrotron radiation. Proc. Natl. Acad. Sci. USA 97: 623-628.
29. Wilson CC. 2000. Single Crystal Neutron Diffraction from Molecular Materials. World Scientific: Singapore.