-
1
-
-
0033999304
-
The phylochrome gene family in tomato and the rapid differential evolution of this family in angiosperms
-
Alba, R., P. M. Kelmenson, M. M. Cordonnier-Pratt, and L. H. Pratt. 2000. The phylochrome gene family in tomato and the rapid differential evolution of this family in angiosperms. Mol. Biol. Evol. 17:362-373.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 362-373
-
-
Alba, R.1
Kelmenson, P.M.2
Cordonnier-Pratt, M.M.3
Pratt, L.H.4
-
2
-
-
34250079042
-
Restriction fragment variation in the nuclear and chloroplast genomes of cultivated and wild Sorgbum bicolor
-
Aldrich, P. R., and J. Doebley. 1992. Restriction fragment variation in the nuclear and chloroplast genomes of cultivated and wild Sorgbum bicolor. Theor. Appl. Genet. 85:293-302.
-
(1992)
Theor. Appl. Genet.
, vol.85
, pp. 293-302
-
-
Aldrich, P.R.1
Doebley, J.2
-
3
-
-
0000194526
-
Patterns of allozyme variation in cultivated and wild Sorghum bicolor
-
Aldrich, P. R., J. Doebley, K. F. Schertz, and A. Stec. 1992. Patterns of allozyme variation in cultivated and wild Sorghum bicolor. Theor. Appl. Genet. 85:451-460.
-
(1992)
Theor. Appl. Genet.
, vol.85
, pp. 451-460
-
-
Aldrich, P.R.1
Doebley, J.2
Schertz, K.F.3
Stec, A.4
-
4
-
-
0031080291
-
The sorghum photoperiod sensitivity gene, Ma3, encodes a phytochrome B
-
Childs, K. L., F. R. Miller, M. M. Cordonnier-Pratt, L. H. Pratt, P. W. Morgan, and J. E. Mullet. 1997. The sorghum photoperiod sensitivity gene, Ma3, encodes a phytochrome B. Plant Physiol. 113:611-619.
-
(1997)
Plant Physiol.
, vol.113
, pp. 611-619
-
-
Childs, K.L.1
Miller, F.R.2
Cordonnier-Pratt, M.M.3
Pratt, L.H.4
Morgan, P.W.5
Mullet, J.E.6
-
5
-
-
0028450080
-
The phytochrome apoprotein family in Arabidopsis is encoded by five genes: The sequences and expression of PHYD and PHYE
-
Clack, T., S. Mathews, and R. A. Sharrock. 1994. The phytochrome apoprotein family in Arabidopsis is encoded by five genes: the sequences and expression of PHYD and PHYE. Plant Mol. Biol. 25:413-427.
-
(1994)
Plant Mol. Biol.
, vol.25
, pp. 413-427
-
-
Clack, T.1
Mathews, S.2
Sharrock, R.A.3
-
6
-
-
0001590098
-
RFLP-based assay of Sorghum bicolor (L.) Moench genetic diversity
-
Cui, Y. X., G. W. Xu, C. W. Magill, K. F. Schertz, and G. E. Hart. 1995. RFLP-based assay of Sorghum bicolor (L.) Moench genetic diversity. Theor. Appl. Genet. 90:787-796.
-
(1995)
Theor. Appl. Genet.
, vol.90
, pp. 787-796
-
-
Cui, Y.X.1
Xu, G.W.2
Magill, C.W.3
Schertz, K.F.4
Hart, G.E.5
-
7
-
-
0031171332
-
The Brassica rapa elongated intemode (EIN) gene encodes phytochrome B
-
Devlin, P. F., D. E. Somers, P. H. Quail, and G. C. Whitelam. 1997. The Brassica rapa elongated intemode (EIN) gene encodes phytochrome B. Plant Mol. Biol. 34:537-547.
-
(1997)
Plant Mol. Biol.
, vol.34
, pp. 537-547
-
-
Devlin, P.F.1
Somers, D.E.2
Quail, P.H.3
Whitelam, G.C.4
-
8
-
-
0002594984
-
A rapid DNA isolation procedure for small amounts of leaf tissue
-
Doyle, J. J., and J. L. Doyle. 1987. A rapid DNA isolation procedure for small amounts of leaf tissue. Phytochem. Bull. 19:11-15.
-
(1987)
Phytochem. Bull.
, vol.19
, pp. 11-15
-
-
Doyle, J.J.1
Doyle, J.L.2
-
9
-
-
1842570367
-
DNA variability and divergence at the Notch locus region of Drosophila melanogaster and D. simulans: A case of accelerated synonymous site divergence
-
in press
-
DuMont, N., V. Bauer, J. C. Fay, P. P. Calabrese and C. F. Aquandro. 2004. DNA variability and divergence at the Notch locus region of Drosophila melanogaster and D. simulans: a case of accelerated synonymous site divergence. Genetics (in press).
-
(2004)
Genetics
-
-
DuMont, N.1
Bauer, V.2
Fay, J.C.3
Calabrese, P.P.4
Aquandro, C.F.5
-
10
-
-
0038788126
-
Nucleotide diversity at two phytochrome loci along a latitudinal cline in Pinus sylvestris
-
García-Gil, M. R., M. Mikkonen, and O. Savolainen. 2003. Nucleotide diversity at two phytochrome loci along a latitudinal cline in Pinus sylvestris. Mol. Ecol. 12:1195-1206.
-
(2003)
Mol. Ecol.
, vol.12
, pp. 1195-1206
-
-
García-Gil, M.R.1
Mikkonen, M.2
Savolainen, O.3
-
11
-
-
0030959648
-
DNA sequence evidence for the segmental allotetraploid origin of maize
-
Gaut, B. S., and J. Doebley. 1997. DNA sequence evidence for the segmental allotetraploid origin of maize. Proc. Natl. Acad. Sci. USA 94:6809-6814.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 6809-6814
-
-
Gaut, B.S.1
Doebley, J.2
-
12
-
-
1842465830
-
Comparative population genetics of the panicoid grasses: Sequence polymorphism, linkage disequilibrium, and selection in a diverse sample of Sorghum bicolor
-
in press
-
Hamblin, M. T., S. E. Mitchell, G. M. White, J. Gallego, R. Kukatla, R. A. Wing, A. H. Paterson, and S. Kresovich. 2004. Comparative population genetics of the panicoid grasses: Sequence polymorphism, linkage disequilibrium, and selection in a diverse sample of Sorghum bicolor. Genetics (in press).
-
(2004)
Genetics
-
-
Hamblin, M.T.1
Mitchell, S.E.2
White, G.M.3
Gallego, J.4
Kukatla, R.5
Wing, R.A.6
Paterson, A.H.7
Kresovich, S.8
-
13
-
-
0031710286
-
Speciation and domestication in maize and its wild relatives: Evidence from the globulin-1 gene
-
Hilton, H., and B. S. Gaut. 1998. Speciation and domestication in maize and its wild relatives: evidence from the globulin-1 gene. Genetics 150:863-872.
-
(1998)
Genetics
, vol.150
, pp. 863-872
-
-
Hilton, H.1
Gaut, B.S.2
-
14
-
-
0031936573
-
Evidence that the phytochrome gene family in black cottonwood has one PHYA locus and two PHYB loci but lacks members of the PHYC/F and PHYE subfamilies
-
Howe, G. T., P. A. Bucciaglia, W. P. Hackett, G. R. Furnier, M. M. Cordonnier-Pratt, and G. Gardner. 1998. Evidence that the phytochrome gene family in black cottonwood has one PHYA locus and two PHYB loci but lacks members of the PHYC/F and PHYE subfamilies. Mol. Biol. Evol. 15:160-175.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 160-175
-
-
Howe, G.T.1
Bucciaglia, P.A.2
Hackett, W.P.3
Furnier, G.R.4
Cordonnier-Pratt, M.M.5
Gardner, G.6
-
15
-
-
0023339852
-
A test of neutral molecular evolution based on nucleotide data
-
Hudson, R. R., M. Kreitman, and M. Aguade. 1987. A test of neutral molecular evolution based on nucleotide data. Genetics 116:153-159.
-
(1987)
Genetics
, vol.116
, pp. 153-159
-
-
Hudson, R.R.1
Kreitman, M.2
Aguade, M.3
-
16
-
-
0006231966
-
Origins of domesticated sorghum and its early diffusion to India and China
-
W. C. Smith and R. A. Frederiksen, eds. John Wiley, New York
-
Kimber, C. 2000. Origins of domesticated sorghum and its early diffusion to India and China. Pp. 3-98 in W. C. Smith and R. A. Frederiksen, eds. Sorghum. John Wiley, New York.
-
(2000)
Sorghum
, pp. 3-98
-
-
Kimber, C.1
-
17
-
-
0029046676
-
Divergence of the phytochrome gene family predates angiosperm evolution and suggests that Selaginella and Equisetum arose prior to Psilotum
-
Kolukisaoglu, H. U., S. Marx, C. Wiegmann, S. Hanelt, and H. A. Schneider-Poetsch. 1995. Divergence of the phytochrome gene family predates angiosperm evolution and suggests that Selaginella and Equisetum arose prior to Psilotum. J. Mol. Evol. 41:329-337.
-
(1995)
J. Mol. Evol.
, vol.41
, pp. 329-337
-
-
Kolukisaoglu, H.U.1
Marx, S.2
Wiegmann, C.3
Hanelt, S.4
Schneider-Poetsch, H.A.5
-
18
-
-
0031733674
-
Genetic control of flowering time in Ambidopsis
-
Koomneef, M., C. Alonso-Blanco, A. J. M. Peeters, and W. Soppe. 1998. Genetic control of flowering time in Ambidopsis. Annu. Rev. Plant Physiol. Plant Mol. Biol. 49:345-370.
-
(1998)
Annu. Rev. Plant Physiol. Plant Mol. Biol.
, vol.49
, pp. 345-370
-
-
Koomneef, M.1
Alonso-Blanco, C.2
Peeters, A.J.M.3
Soppe, W.4
-
19
-
-
0038497893
-
Adaptive evolution in the photosensory domain of phytochrome A in early angiosperms
-
Mathews, S., J. G. Burleigh, and M. J. Donoghue. 2003. Adaptive evolution in the photosensory domain of phytochrome A in early angiosperms. Mol. Biol. Evol. 20:1087-1097.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 1087-1097
-
-
Mathews, S.1
Burleigh, J.G.2
Donoghue, M.J.3
-
20
-
-
0033693754
-
Basal angiosperm phylogeny inferred from duplicate phytochromes A and C
-
Mathews, S., and M. J. Donoghue. 2000. Basal angiosperm phylogeny inferred from duplicate phytochromes A and C. Int. J. Plant Sci. 161:S41-S55.
-
(2000)
Int. J. Plant Sci.
, vol.161
-
-
Mathews, S.1
Donoghue, M.J.2
-
21
-
-
0001372273
-
Evolution of the phytochrome gene family and its utility for phylogenetic analyses of angiosperms
-
Mathews, S., M. Lavin, and R. A. Sharrock. 1995. Evolution of the phytochrome gene family and its utility for phylogenetic analyses of angiosperms. Ann. Missouri Bot. Garden 82:296-321.
-
(1995)
Ann. Missouri Bot. Garden
, vol.82
, pp. 296-321
-
-
Mathews, S.1
Lavin, M.2
Sharrock, R.A.3
-
22
-
-
0029858595
-
The phytochrome gene family in grasses (Poaceae): A phylogeny and evidence that grasses have a subset of the loci found in dicot angiosperms
-
Mathews, S., and R. A. Sharrock. 1996. The phytochrome gene family in grasses (Poaceae): a phylogeny and evidence that grasses have a subset of the loci found in dicot angiosperms. Mol. Biol. Evol. 13:1141-1150.
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 1141-1150
-
-
Mathews, S.1
Sharrock, R.A.2
-
23
-
-
0030908857
-
Phytochrome gene diversity
-
-. 1997. Phytochrome gene diversity. Plant, Cell Environ. 20:666-671.
-
(1997)
Plant, Cell Environ.
, vol.20
, pp. 666-671
-
-
-
24
-
-
0026428610
-
Adaptive protein evolution at the Adh locus in Drosophila
-
McDonald, J. H., and M. Kreitman. 1991. Adaptive protein evolution at the Adh locus in Drosophila. Nature 351:652-654.
-
(1991)
Nature
, vol.351
, pp. 652-654
-
-
McDonald, J.H.1
Kreitman, M.2
-
25
-
-
0031761342
-
Intra- and interspecific DNA variation and codon bias of the alcohol dehydrogenase (Adh) locus in Arabis and Arabidopsis species
-
Miyashita, N. T., A. Kawabe, H. Innan, R. Terauch. 1998. Intra- and interspecific DNA variation and codon bias of the alcohol dehydrogenase (Adh) locus in Arabis and Arabidopsis species. Mol. Biol. Evol. 15:1420-1429.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 1420-1429
-
-
Miyashita, N.T.1
Kawabe, A.2
Innan, H.3
Terauch, R.4
-
26
-
-
0141564579
-
Isolation and characterization of phyC mutants in Arabidopsis reveals complex crosstalk between phytochrome signaling pathways
-
Monte, E., J. M. Alonso, J. R. Ecker, Y. Zhang, X. Li, J. Young, S. Austin-Phillips, and P. H. Quail. 2003. Isolation and characterization of phyC mutants in Arabidopsis reveals complex crosstalk between phytochrome signaling pathways. Plant Cell 15:1962-1980.
-
(2003)
Plant Cell
, vol.15
, pp. 1962-1980
-
-
Monte, E.1
Alonso, J.M.2
Ecker, J.R.3
Zhang, Y.4
Li, X.5
Young, J.6
Austin-Phillips, S.7
Quail, P.H.8
-
27
-
-
0036888478
-
Opportunities to improve adaptability and yield in grasses: Lessons from sorghum
-
Morgan, P. W., S. A. Finlayson, K. L. Childs, J. E. Mullet, and W. L. Rooney. 2002. Opportunities to improve adaptability and yield in grasses: lessons from sorghum. Crop Sci. 42:1791-1799.
-
(2002)
Crop Sci.
, vol.42
, pp. 1791-1799
-
-
Morgan, P.W.1
Finlayson, S.A.2
Childs, K.L.3
Mullet, J.E.4
Rooney, W.L.5
-
28
-
-
0000470601
-
Isolation and initial characterization of Arabidopsis mutants that are deficient in phytochrome A
-
Nagatani, A., J. W. Reed, and J. Chory. 1993. Isolation and initial characterization of Arabidopsis mutants that are deficient in phytochrome A. Plant Physiol. 102:269-277.
-
(1993)
Plant Physiol.
, vol.102
, pp. 269-277
-
-
Nagatani, A.1
Reed, J.W.2
Chory, J.3
-
30
-
-
0027949428
-
Phytochrome A and phytochrome B have overlapping but distinct functions in Arabidopsis development
-
Reed, J. W., A. Nagatani, T. D. Elich, M. Fagan, and J. Chory. 1994. Phytochrome A and phytochrome B have overlapping but distinct functions in Arabidopsis development. Plant Physiol 104:1139-1149.
-
(1994)
Plant Physiol.
, vol.104
, pp. 1139-1149
-
-
Reed, J.W.1
Nagatani, A.2
Elich, T.D.3
Fagan, M.4
Chory, J.5
-
31
-
-
0032972599
-
DnaSP version 3: An integrated program for molecular population genetics and molecular evolution analysis
-
Rozas, J., and R. Rozas. 1999. DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15:174-175.
-
(1999)
Bioinformatics
, vol.15
, pp. 174-175
-
-
Rozas, J.1
Rozas, R.2
-
32
-
-
0034609795
-
Phytochromes and light signal perception by plants-an emerging synthesis
-
Smith, H. 2000. Phytochromes and light signal perception by plants-an emerging synthesis. Nature 407:585-591.
-
(2000)
Nature
, vol.407
, pp. 585-591
-
-
Smith, H.1
-
33
-
-
0024313579
-
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
-
Tajima, F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595.
-
(1989)
Genetics
, vol.123
, pp. 585-595
-
-
Tajima, F.1
-
34
-
-
12244275661
-
Novel loci control variation in reproductive timing in Arabidopsis thaliana in natural environments
-
Weinig, C., M. C. Ungerer, L. A. Dorn, N. C. Kane, Y. Toyonaga, S. S. Halldorsdottir, T. F. Mackay, M. D. Purugganan, and J. Schmitt. 2002. Novel loci control variation in reproductive timing in Arabidopsis thaliana in natural environments. Genetics 162:1875-1884.
-
(2002)
Genetics
, vol.162
, pp. 1875-1884
-
-
Weinig, C.1
Ungerer, M.C.2
Dorn, L.A.3
Kane, N.C.4
Toyonaga, Y.5
Halldorsdottir, S.S.6
Mackay, T.F.7
Purugganan, M.D.8
Schmitt, J.9
-
35
-
-
0033675780
-
Physiological interactions of phytochromes A, B1 and B2 in the control of development in tomato
-
Weller, J. L., M. E. Schreuder, H. Smith, M. Koomneef, and R. E. Kendrick. 2000. Physiological interactions of phytochromes A, B1 and B2 in the control of development in tomato. Plant J. 24:345-356.
-
(2000)
Plant J.
, vol.24
, pp. 345-356
-
-
Weller, J.L.1
Schreuder, M.E.2
Smith, H.3
Koomneef, M.4
Kendrick, R.E.5
-
36
-
-
0032712146
-
The molecular evolution of terminal ear1, a regulatory gene in the genus Zea
-
White, S. E., and J. F. Doebley. 1999. The molecular evolution of terminal ear1, a regulatory gene in the genus Zea. Genetics 153:1455-1462.
-
(1999)
Genetics
, vol.153
, pp. 1455-1462
-
-
White, S.E.1
Doebley, J.F.2
-
37
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
Yang, Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. CABIOS 13:555-556.
-
(1997)
CABIOS
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
38
-
-
0036270185
-
Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages
-
Yang, Z., and R. Nielsen. 2002. Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages. Mol. Biol. Evol. 19:908-917.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 908-917
-
-
Yang, Z.1
Nielsen, R.2
|