메뉴 건너뛰기




Volumn 3, Issue , 2003, Pages

Compensatory mutations cause excess of antagonistic epistasis in RNA secondary structure folding

Author keywords

[No Author keywords available]

Indexed keywords

RNA;

EID: 1842507188     PISSN: 14712148     EISSN: None     Source Type: Journal    
DOI: 10.1186/1471-2148-3-3     Document Type: Article
Times cited : (61)

References (62)
  • 1
    • 0002854090 scopus 로고    scopus 로고
    • Beyond the average: The evolutionary importance of gene interactions and variability of epistatic effects
    • (Edited by: Wolf J, Brodie E, Wade M) Oxford, UK, Oxford University Press
    • Phillips P, Otto S and Whitlock M Beyond the average: the evolutionary importance of gene interactions and variability of epistatic effects. In: Epistasis and the Evolutionary Process (Edited by: Wolf J, Brodie E, Wade M) Oxford, UK, Oxford University Press 2000, 20-38
    • (2000) Epistasis and the Evolutionary Process , pp. 20-38
    • Phillips, P.1    Otto, S.2    Whitlock, M.3
  • 2
    • 0033549752 scopus 로고    scopus 로고
    • Genome complexity, robustness and genetic interactions in digital organisms
    • Lenski RE, Ofria C, Collier TC and Adami C Genome complexity, robustness and genetic interactions in digital organisms. Nature 1999, 400:661-664
    • (1999) Nature , vol.400 , pp. 661-664
    • Lenski, R.E.1    Ofria, C.2    Collier, T.C.3    Adami, C.4
  • 4
    • 0031285084 scopus 로고    scopus 로고
    • Epistasis and its consequences for the evolution of natural populations
    • Fenster CB, Galloway LF and Chao L Epistasis and its consequences for the evolution of natural populations. Trends Ecol Evol 1997, 12:282-286
    • (1997) Trends Ecol Evol , vol.12 , pp. 282-286
    • Fenster, C.B.1    Galloway, L.F.2    Chao, L.3
  • 6
    • 0031879153 scopus 로고    scopus 로고
    • The evolution of canalization and the breaking of von Baer's law: Modeling the evolution of development with epistasis
    • Rice SH The evolution of canalization and the breaking of von Baer's law: modeling the evolution of development with epistasis. Evolution 1998, 52:647-656
    • (1998) Evolution , vol.52 , pp. 647-656
    • Rice, S.H.1
  • 7
    • 0027008226 scopus 로고
    • Quantitative variability and multilocus polymorphism under epistatic selection
    • Zhivotovsky LA and Gavrilets S Quantitative variability and multilocus polymorphism under epistatic selection. Theor Popul Biol 1992, 42:254-283
    • (1992) Theor Popul Biol , vol.42 , pp. 254-283
    • Zhivotovsky, L.A.1    Gavrilets, S.2
  • 8
    • 0027286541 scopus 로고
    • Pleiotropic models of polygenic variation, stabilizing selection, and epistasis
    • Gavrilets S and de Jong G Pleiotropic models of polygenic variation, stabilizing selection, and epistasis. Genetics 1993, 134:609-625
    • (1993) Genetics , vol.134 , pp. 609-625
    • Gavrilets, S.1    De Jong, G.2
  • 9
    • 0035198377 scopus 로고    scopus 로고
    • Modeling genetic architecture: A multilinear theory of gene interaction
    • Hansen TF and Wagner GP Modeling genetic architecture: a multilinear theory of gene interaction. Theor Pop Biol 2001, 59:61-86
    • (2001) Theor Pop Biol , vol.59 , pp. 61-86
    • Hansen, T.F.1    Wagner, G.P.2
  • 10
    • 0035007367 scopus 로고    scopus 로고
    • Epistasis and the mutation load: A measurement-theoretical approach
    • Hansen TF and Wagner GP Epistasis and the mutation load: a measurement-theoretical approach. Genetics 2001, 158:477-485
    • (2001) Genetics , vol.158 , pp. 477-485
    • Hansen, T.F.1    Wagner, G.P.2
  • 11
    • 0034919014 scopus 로고    scopus 로고
    • Interaction between directional epistasis and average mutational effects
    • Wilke CO and Adami C Interaction between directional epistasis and average mutational effects. Proc R Soc Lond B 2001, 268:1469-1474
    • (2001) Proc R Soc Lond B , vol.268 , pp. 1469-1474
    • Wilke, C.O.1    Adami, C.2
  • 12
    • 0020360884 scopus 로고
    • Selection against harmful mutations in large sexual and asexual populations
    • Cambridge
    • Kondrashov AS Selection against harmful mutations in large sexual and asexual populations. Genet Res (Cambridge) 1982, 40:325-332
    • (1982) Genet Res , vol.40 , pp. 325-332
    • Kondrashov, A.S.1
  • 13
    • 0023737547 scopus 로고
    • Deleterious mutations and the evolution of sexual reproduction
    • Kondrashov AS Deleterious mutations and the evolution of sexual reproduction. Nature 1988, 336:435-440
    • (1988) Nature , vol.336 , pp. 435-440
    • Kondrashov, A.S.1
  • 14
    • 0025079181 scopus 로고
    • Mutation-selection balance and the evolutionary advantage of sex and recombination
    • Cambridge
    • Charlesworth B Mutation-selection balance and the evolutionary advantage of sex and recombination. Genet Res (Cambridge) 1990, 55:199-221
    • (1990) Genet Res , vol.55 , pp. 199-221
    • Charlesworth, B.1
  • 15
    • 0031127243 scopus 로고    scopus 로고
    • Deleterious mutations, variable epistatic interactions, and the evolution of recombination
    • Otto SP and Feldman MW Deleterious mutations, variable epistatic interactions, and the evolution of recombination. Theor Popul Biol 1997, 51:134-137
    • (1997) Theor Popul Biol , vol.51 , pp. 134-137
    • Otto, S.P.1    Feldman, M.W.2
  • 16
    • 0018343295 scopus 로고
    • Efficiency of truncation selection
    • Crow JF and Kimura M Efficiency of truncation selection. Proc Natl Acad Sci USA 1978, 76:396-399
    • (1978) Proc Natl Acad Sci USA , vol.76 , pp. 396-399
    • Crow, J.F.1    Kimura, M.2
  • 17
    • 0028294555 scopus 로고
    • Muller's ratchet under epistatic selection
    • Kondrashov AS Muller's ratchet under epistatic selection. Genetics 1994, 136:1469-1473
    • (1994) Genetics , vol.136 , pp. 1469-1473
    • Kondrashov, A.S.1
  • 18
    • 0035803270 scopus 로고    scopus 로고
    • Soluble model for the accumulation of mutations in asexual populations
    • Colato A and Fontanari JF Soluble model for the accumulation of mutations in asexual populations. Phys Rev Lett 2001, 87:238102
    • (2001) Phys Rev Lett , vol.87 , pp. 238102
    • Colato, A.1    Fontanari, J.F.2
  • 21
    • 0031020691 scopus 로고    scopus 로고
    • An experimental test for synergistic epistasis and its application to Chlamydomonas
    • de Visser JAGM, Hoekstra RF and van den Ende H An experimental test for synergistic epistasis and its application to Chlamydomonas. Genetics 1997, 145:815-819
    • (1997) Genetics , vol.145 , pp. 815-819
    • De Visser, J.A.G.M.1    Hoekstra, R.F.2    Van Den Ende, H.3
  • 22
    • 0030780902 scopus 로고    scopus 로고
    • Test of interaction between genetic markers that affect fitness in Aspergillus niger
    • de Visser JAGM, Hoekstra RF and van den Ende H Test of interaction between genetic markers that affect fitness in Aspergillus niger. Evolution 1997, 51:1499-1505
    • (1997) Evolution , vol.51 , pp. 1499-1505
    • De Visser, J.A.G.M.1    Hoekstra, R.F.2    Van Den Ende, H.3
  • 23
    • 0031831591 scopus 로고    scopus 로고
    • Synergistic epistasis between loci affecting fitness: Evidence in plants and fungi
    • Cambridge
    • de Visser JAGM and Hoekstra RF Synergistic epistasis between loci affecting fitness: evidence in plants and fungi. Genet Res (Cambridge) 1998, 71:39-49
    • (1998) Genet Res , vol.71 , pp. 39-49
    • De Visser, J.A.G.M.1    Hoekstra, R.F.2
  • 24
    • 0031833592 scopus 로고    scopus 로고
    • Testing for epistasis between deleterious mutations
    • West SA, Peters AD and Barton NH Testing for epistasis between deleterious mutations. Genetics 1998, 149:435-444
    • (1998) Genetics , vol.149 , pp. 435-444
    • West, S.A.1    Peters, A.D.2    Barton, N.H.3
  • 25
    • 0031458777 scopus 로고    scopus 로고
    • Test of synergistic interactions among deleterious mutations in bacteria
    • Elena SF and Lenski RE Test of synergistic interactions among deleterious mutations in bacteria. Nature 1997, 390:395-398
    • (1997) Nature , vol.390 , pp. 395-398
    • Elena, S.F.1    Lenski, R.E.2
  • 26
    • 0033278903 scopus 로고    scopus 로고
    • Little evidence for synergism among deleterious mutations in a nonsegmented RNA virus
    • Elena SF Little evidence for synergism among deleterious mutations in a nonsegmented RNA virus. J Mol Evol 1999, 49:703-707
    • (1999) J Mol Evol , vol.49 , pp. 703-707
    • Elena, S.F.1
  • 27
    • 0034536295 scopus 로고    scopus 로고
    • A test for epistasis among induced mutations in Caenorhabditis elegans
    • Peters AD and Keightley PD A test for epistasis among induced mutations in Caenorhabditis elegans. Genetics 2000, 156:1635-1647
    • (2000) Genetics , vol.156 , pp. 1635-1647
    • Peters, A.D.1    Keightley, P.D.2
  • 28
    • 0343963783 scopus 로고    scopus 로고
    • Effect of deleterious mutation-accumulation on the fitness of RNA bacteriophage MS2
    • de la Peña M, Elena SF and Moya A Effect of deleterious mutation-accumulation on the fitness of RNA bacteriophage MS2. Evolution 2000, 54:686-691
    • (2000) Evolution , vol.54 , pp. 686-691
    • De La Peña, M.1    Elena, S.F.2    Moya, A.3
  • 29
    • 0035055001 scopus 로고    scopus 로고
    • Epistatic interactions of spontaneous mutations in haploid strains of the yeast Saccharomyces cerevisiae
    • Wloch DM, Borts RH and Korona R Epistatic interactions of spontaneous mutations in haploid strains of the yeast Saccharomyces cerevisiae. J Evol Biol 2001, 14:310-316
    • (2001) J Evol Biol , vol.14 , pp. 310-316
    • Wloch, D.M.1    Borts, R.H.2    Korona, R.3
  • 30
    • 0033709990 scopus 로고    scopus 로고
    • Factors affecting the genetic load in Drosophila: Synergistic epistasis and correlations among fitness components
    • Whitlock MC and Bourguet D Factors affecting the genetic load in Drosophila: synergistic epistasis and correlations among fitness components. Evolution 2000, 54:1654-1660
    • (2000) Evolution , vol.54 , pp. 1654-1660
    • Whitlock, M.C.1    Bourguet, D.2
  • 32
    • 0032577365 scopus 로고    scopus 로고
    • Continuity in evolution: On the nature of transitions
    • Fontana W and Schuster P Continuity in evolution: on the nature of transitions. Science 1998, 280:1451-1455
    • (1998) Science , vol.280 , pp. 1451-1455
    • Fontana, W.1    Schuster, P.2
  • 33
    • 0040357165 scopus 로고    scopus 로고
    • Chance and necessity in evolution: Lessons from RNA
    • Schuster P and Fontana W Chance and necessity in evolution: lessons from RNA. Physica D 1999, 133:427-452
    • (1999) Physica D , vol.133 , pp. 427-452
    • Schuster, P.1    Fontana, W.2
  • 35
    • 0034522921 scopus 로고    scopus 로고
    • RNA secondary structure: Physical and computational aspects
    • Higgs PG RNA secondary structure: physical and computational aspects. Quart Rev Biophys 2000, 33:199-253
    • (2000) Quart Rev Biophys , vol.33 , pp. 199-253
    • Higgs, P.G.1
  • 36
    • 0035544542 scopus 로고    scopus 로고
    • Selection for fitness versus selection for robustness in RNA secondary structure folding
    • Wilke CO Selection for fitness versus selection for robustness in RNA secondary structure folding. Evolution 2001, 55:2412-2420
    • (2001) Evolution , vol.55 , pp. 2412-2420
    • Wilke, C.O.1
  • 37
    • 0031284943 scopus 로고    scopus 로고
    • Evolution and speciation on holey adaptive landscapes
    • Gavrilets S Evolution and speciation on holey adaptive landscapes. Trends Ecol Evol 1997, 12:307-312
    • (1997) Trends Ecol Evol , vol.12 , pp. 307-312
    • Gavrilets, S.1
  • 38
    • 0030030533 scopus 로고    scopus 로고
    • Smoothness within ruggedness: The role of neutrality in adaptation
    • Huynen MA, Stadler PF and Fontana W Smoothness within ruggedness: the role of neutrality in adaptation. Proc Natl Acad Sci USA 1996, 93:397-401
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 397-401
    • Huynen, M.A.1    Stadler, P.F.2    Fontana, W.3
  • 39
    • 0030782481 scopus 로고    scopus 로고
    • How are model protein structures distributed in sequence space?
    • Bornberg-Bauer E How are model protein structures distributed in sequence space? Biophysics Journal 1997, 73:2393-2403
    • (1997) Biophysics Journal , vol.73 , pp. 2393-2403
    • Bornberg-Bauer, E.1
  • 40
    • 0031556932 scopus 로고    scopus 로고
    • Percolation on the fitness hypercube and the evolution of reproductive isolation
    • Gavrilets S and Gravner J Percolation on the fitness hypercube and the evolution of reproductive isolation. J Theor Biol 1997, 184:51-64
    • (1997) J Theor Biol , vol.184 , pp. 51-64
    • Gavrilets, S.1    Gravner, J.2
  • 41
    • 0031105866 scopus 로고    scopus 로고
    • Generic properties of combinatory maps: Neutral networks of RNA secondary structures
    • Reidys C, Stadler PF and Schuster P Generic properties of combinatory maps: neutral networks of RNA secondary structures. Bull Math Biol 1997, 59:339-397
    • (1997) Bull Math Biol , vol.59 , pp. 339-397
    • Reidys, C.1    Stadler, P.F.2    Schuster, P.3
  • 44
    • 0034667684 scopus 로고    scopus 로고
    • Plasticity, evolvability, and modularity in RNA
    • Ancel LW and Fontana W Plasticity, evolvability, and modularity in RNA. J Exp Zool (Mol Dev Evol) 2000, 288:242-283
    • (2000) J Exp Zool (Mol Dev Evol) , vol.288 , pp. 242-283
    • Ancel, L.W.1    Fontana, W.2
  • 45
    • 0028491474 scopus 로고
    • Structural compensation in atypical mitochondrial tRNAs
    • Steinberg S and Cedergren R Structural compensation in atypical mitochondrial tRNAs. Nature Struct Biol 1994, 1:507-510
    • (1994) Nature Struct Biol , vol.1 , pp. 507-510
    • Steinberg, S.1    Cedergren, R.2
  • 46
    • 0028834744 scopus 로고
    • Compensatory substitutions and the evolution of the mitochondrial 12S rRNA gene in mammals
    • Springer MS, Hollar LJ and Burk A Compensatory substitutions and the evolution of the mitochondrial 12S rRNA gene in mammals. Mol Biol Evol 1995, 12:1138-1150
    • (1995) Mol Biol Evol , vol.12 , pp. 1138-1150
    • Springer, M.S.1    Hollar, L.J.2    Burk, A.3
  • 47
    • 0026490428 scopus 로고
    • Functional compensation of a recognition-defective transfer RNA by a distal base pair substitution
    • Hou Y-M and Schimmel P Functional compensation of a recognition-defective transfer RNA by a distal base pair substitution. Biochemistry 1992, 31:10310-10314
    • (1992) Biochemistry , vol.31 , pp. 10310-10314
    • Hou, Y.-M.1    Schimmel, P.2
  • 48
    • 0027164566 scopus 로고
    • RNA folding in Drosophila shows a distance effect for compensatory fitness interactions
    • Stephan W and Kirby DA RNA folding in Drosophila shows a distance effect for compensatory fitness interactions. Genetics 1993, 135:97-103
    • (1993) Genetics , vol.135 , pp. 97-103
    • Stephan, W.1    Kirby, D.A.2
  • 49
    • 0033533517 scopus 로고    scopus 로고
    • Neutral evolution of model proteins: Diffusion in sequence space and overdispersion
    • Bastolla U, Roman HE and Vendruscolo M Neutral evolution of model proteins: diffusion in sequence space and overdispersion. J Theor Biol 1999, 200:49-64
    • (1999) J Theor Biol , vol.200 , pp. 49-64
    • Bastolla, U.1    Roman, H.E.2    Vendruscolo, M.3
  • 50
    • 0036306115 scopus 로고    scopus 로고
    • Why are proteins so robust to site mutations?
    • Taverna DM and Goldstein RA Why are proteins so robust to site mutations? J Mol Biol 2002, 315:479-484
    • (2002) J Mol Biol , vol.315 , pp. 479-484
    • Taverna, D.M.1    Goldstein, R.A.2
  • 52
    • 0034049316 scopus 로고    scopus 로고
    • Quantitative analysis of the effect of the mutation frequency on the affinity maturation of single chain Fv antibodies
    • Daugherty PS, Chen G, Iverson BL and Georgiou G Quantitative analysis of the effect of the mutation frequency on the affinity maturation of single chain Fv antibodies. Proc Natl Acad Sci USA 2000, 97:2029-2034
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 2029-2034
    • Daugherty, P.S.1    Chen, G.2    Iverson, B.L.3    Georgiou, G.4
  • 53
    • 2942551940 scopus 로고    scopus 로고
    • Directing the evolvable: Utilizing robustness in in vitro evolution
    • Edited by: Jen E
    • Voigt CA, Mayo SL, Wang Z-G and Arnold F Directing the evolvable: utilizing robustness in in vitro evolution. In: Robustness (Edited by: Jen E)
    • Robustness
    • Voigt, C.A.1    Mayo, S.L.2    Wang, Z.-G.3    Arnold, F.4
  • 54
    • 0030788941 scopus 로고    scopus 로고
    • A natural polymorphism in β-lactamase is a global suppressor
    • Huang W and Palzkill T A natural polymorphism in β-lactamase is a global suppressor. Proc Natl Acad Sci USA 1997, 94:8801-8806
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 8801-8806
    • Huang, W.1    Palzkill, T.2
  • 55
    • 0035793095 scopus 로고    scopus 로고
    • A secondary drug resistance mutation of TEM-1 β-lactamase that suppresses misfolding and aggregation
    • Sideraki V, Huang W, Palzkill T and Gilbert HF A secondary drug resistance mutation of TEM-1 β-lactamase that suppresses misfolding and aggregation. Proc Natl Acad Sci USA 2001, 98:283-288
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 283-288
    • Sideraki, V.1    Huang, W.2    Palzkill, T.3    Gilbert, H.F.4
  • 56
    • 0023713896 scopus 로고
    • Evolution of sex in RNA viruses
    • Chao L Evolution of sex in RNA viruses. J Theor Biol 1988, 133:99-112
    • (1988) J Theor Biol , vol.133 , pp. 99-112
    • Chao, L.1
  • 57
    • 0033055004 scopus 로고    scopus 로고
    • Evolution by small steps and rugged landscapes in the RNA virus Φ6
    • Burch CL and Chao L Evolution by small steps and rugged landscapes in the RNA virus Φ6. Genetics 1999, 151:921-927
    • (1999) Genetics , vol.151 , pp. 921-927
    • Burch, C.L.1    Chao, L.2
  • 58
    • 0034615640 scopus 로고    scopus 로고
    • Pervasive compensatory adaptation in Escherichia coli
    • Moore FB-G, Rozen DE and Lenski RE Pervasive compensatory adaptation in Escherichia coli. Proc R Soc Lond B 2000, 267:515-522
    • (2000) Proc R Soc Lond B , vol.267 , pp. 515-522
    • Moore, F.B.-G.1    Rozen, D.E.2    Lenski, R.E.3
  • 59
    • 0036190698 scopus 로고    scopus 로고
    • Experimental genomic evolution: Extensive compensation for loss of DNA ligase activity in a virus
    • Rokyta D, Badgett MR, Molineux IJ and Bull JJ Experimental genomic evolution: extensive compensation for loss of DNA ligase activity in a virus. Mol Biol Evol 2002, 19:230-238
    • (2002) Mol Biol Evol , vol.19 , pp. 230-238
    • Rokyta, D.1    Badgett, M.R.2    Molineux, I.J.3    Bull, J.J.4
  • 61
    • 0000577181 scopus 로고
    • The genetic structure of natural populations of Drosophila melanogaster. VII. Synergistic interaction of spontaneous mutant polygenes controlling viability
    • Mukai T The genetic structure of natural populations of Drosophila melanogaster. VII. Synergistic interaction of spontaneous mutant polygenes controlling viability. Genetics 1969, 61:749-761
    • (1969) Genetics , vol.61 , pp. 749-761
    • Mukai, T.1
  • 62
    • 0034836991 scopus 로고    scopus 로고
    • Intrinsically driven changes in gene interaction complexity. I. Growth of regulatory complexes and increase in number of genes
    • Zuckerkandl E Intrinsically driven changes in gene interaction complexity. I. Growth of regulatory complexes and increase in number of genes. J Mol Evol 2001, 53:539-554
    • (2001) J Mol Evol , vol.53 , pp. 539-554
    • Zuckerkandl, E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.