Gene content of the 750-kb critical region for mouse embryonic ectoderm lethal tcl-w5

Mammalian Genome

Volumn 15, Issue 4, 2004, Pages 265-276

  Abe, Kuniya ^a,b   Yuzuriha, Misako ^a,b   Sugimoto, Michihiko ^a   Ko, Minoru S H ^c   Brathwaite, Mgavi ^c   Waeltz, Paul ^c   Nagaraja, Ramaiah ^c  

^a RIKEN   (Japan)

^b KUMAMOTO UNIVERSITY   (Japan)

^c NATIONAL INSTITUTE ON AGING   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CONTIG;

ALLELE; ANIMAL TISSUE; ARTICLE; BACTERIAL ARTIFICIAL CHROMOSOME; D17MIT147 GENE; ECTODERM; EMBRYO; EMBRYO DEVELOPMENT; EXPRESSED SEQUENCE TAG; GENE; GENE EXPRESSION PROFILING; GENE LOCUS; GENE MAPPING; GENE MUTATION; GENE STRUCTURE; GENOME; H 2K GENE; H 2PB GENE; HOMOZYGOSITY; MARKER GENE; MICROSATELLITE MARKER; MOLECULAR CLONING; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; TCL W5 GENE; UNINDEXED SEQUENCE;

ANIMALS; BASE SEQUENCE; CHROMOSOME MAPPING; CHROMOSOMES, ARTIFICIAL, BACTERIAL; ECTODERM; EXPRESSED SEQUENCE TAGS; GENES, MHC CLASS I; GENETIC MARKERS; MICE; MOLECULAR SEQUENCE DATA; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA; SEQUENCE ANALYSIS, DNA;

ANIMALIA; BACTERIA (MICROORGANISMS); MAMMALIA;

EID: 1842504495     PISSN: 09388990     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00335-003-2329-1     Document Type: Article

References (40)

1. Abe K, Wei J-F, Wei F-S, Hsu Y-C, Uehara H et al. (1988) Searching for coding sequences in the mammalian genome: the H-2K region of the mouse MHC is replete with genes expressed in embryos. EMBO J 7, 3441-3449
2. Artzt K, Abe K, Uehara H, Bennett D (1988) Intra-H-2 recombination in t haplotypes shows a hot spot and close linkage of 1 tw5 to H-2K. Immunogenetics 28, 30-37
3. Bajenova OV, Zimmer R, Stolper E, Salisbury-Rosewell J, Nanji A et al. (2001) Heterogeneous RNA-binding protein M4 is a receptor for carcinoembryonic antigen in Kupffer cells. J Biol Chem 276, 31067-31073
4. Bennett D (1975) The T-locus of the mouse: a review. Cell 28, 463-470
5. Bennett D, Dunn LC (1958) Effects in embryonic development of a group of genetically similar lethal alleles derived from different populations of wild house mice. J Morphol 103, 135-158
6. Burge C, Karlin S (1997) Prediction of complete gene structures in human genomic DNA. J Mol Biol 268, 78-94
7. Daniotti JL, Martina JA, Zurita AR, Maccioni HJF (1999). Mouse β 1,3-galactosyltransferase (GA1/GM1/ GD1b synthase): Protein characterization, tissue expression, and developmental regulation in neural retina. J Neurosci Res 58, 318-327
8. del Mar Lorente M, Marcos-Gutierrez C, Perez C, Schoorlemmer J, Ramirez A et al. (2000) Loss-and gain-of-function mutations show a Polycomb group function for Ring1A in mice. Development 127, 5093-5100
9. Garbi N, Tan P, Diehl AD, Chambers BJ, Ljunggren H-G et al. (2000) Impaired immune responses and altered peptide repertoire in tapasin-deficient mice. Nature Immunol 3, 234-238
10. Ha H, Abe K, Artzt K (1991) Primary structure of the embryo-expressed gene KE2 from the mouse H-2K region. Gene 107, 345-346
11. Hanson IM, Poustka A, Trowsdale J (1991) New genes in the class II region of the human major histocompatibility complex. Genomics 10, 417-424
12. w5 mouse embryos. J Embryol Exp Morphol 60, 419-428
13. Isobe T, Yoshino M, Mizuno K, Fischer Lindahl K, Koide T et al. (2002) Molecular characterization of the Pb recombination hotspot in the mouse major histocompatibility complex class II region. Genomics 80, 229-235
14. Kargul GJ, Nagaraja R, Shimada T, Grahovac MJ, Lim MK et al. (2000) Eleven densely clustered genes, six of them novel, in 176 kb of mouse t-complex DNA. Genome Res 10, 916-923
15. Kastner P, Mark M, Leid M, Gansmuller A, Chin W et al. (1996) Abnormal spermatogenesis in RXR β mutant mice. Genes Dev 10, 80-92
16. Kim J, Kim H-G, Kim H, Kim H-H, Park SK et al. (2000) Hepatic expression, synthesis and secretion of a novel fibrinogen/angiopoietin-related protein that prevents endothelial-cell apoptosis. Biochem J 346, 603-610
17. Krautwurst D, Yau KW, Reed RR (1998) Identification of ligands for olfactory receptors by functional expression of a receptor library. Cell 95, 917-926
18. Kurihara LJ, Semenova E, Miller W, Ingram RS, Guan X-J et al. (2002) Candidate genes required for embryonic development: a comparative analysis of distal mouse chromosome 14 and human chromosome 13q22. Genomics 79, 154-161
19. Lai F, Stubbs L, Lehrach H, Huang Y, Yeom YI et al. (1994) Genomic organization and expressed sequences of the mouse extended H-2K region. Genomics 23, 338-343
20. w5 blastocysts. Nature 298, 750-753
21. Martin GR, Evans MJ (1975) Differentiation of clonal lines of teratocarcinoma cells: formation of embryoid bodies in vitro. Proc Natl Acad Sci USA 72, 1441-1445
22. Michaelson JS, Bader D, Kuo F, Kozak C, Leder P (1999) Loss of Daxx, a promiscuously interacting protein, results in extensive apoptosis in early mouse development. Genes Dev 13, 1918-1923
23. Nakamoto T, Yamagata T, Sakai R, Ogawa S, Honda H et al. (2000) CIZ, a zinc finger protein that interacts with p130cas and activates the expression of matrix metalloproteinases. Mol Cell Biol 20, 1649-1658
24. Ota M, Mizuki N, Katsuyama Y, Tamiya G, Shiina T et al. (1999) The critical region for Behcet disease in the human major histocompatibility complex is reduced to a 46-kb segment centromeric of HLA-B, by association analysis using refined micro satellite mapping. Am J Hum Genet 64, 1406-1410
25. Ozawa A, Miyahara M, Sugai J, Iizuka M, Kawakubo Y et al. (1998) HLA class I and II alleles and susceptibility to generalized pustular psoriasis: significant associations with HLA-Cw1 and HLA-DQB1*0303. J Dermatol 25, 573-581
26. Riley J, Butler R, Ogilvie D, Finniear R, Jenner D et al. (1990) A novel, rapid method for the isolation of terminal sequences from yeast artificial chromosome (YAC) clones. Nucleic Acids Res 18, 2887-2890
27. Rowen L, Qin S, Madan A, Loretz C, James R et al. (1998) Sequence of the mouse major histocompatibility locus class II region. GenBank ACCESSION No. AF100956.
28. Sacconne S, Caccio S, Perani P, Andreozzi L, Rapisarda A et al. (1997) Compositional mapping of mouse chromosomes and identification of the gene-rich regions. Chromosome Res 5, 293-300
29. Shin H-S, Bennett D, Artzt K (1984) Gene mapping within the T/t complex of the mouse. IV. The inverted MHC is intermingled with several t-lethal genes. Cell 39, 573-578
30. Steinmetz M, Uematsu Y, Fischer-Lindahl K (1987) Hotspots of homologous recombination in mammalian genomes. Trends Genet 3, 7-10
31. Stewart CL (1982) Formation of viable chimaeras by aggregation between terato-carcinomas and preimplantation mouse embryos. J Embryol Exp Morphol 67, 167-179
32. w5 region of mice. Mol Cell Biol 10, 138-145
33. w5 mouse embryos. Genesis 37, 162-171
34. Tienari J, Lehtonen E, Vartio T, Virtanen I (1989) Embryonal carcinoma cells adhere preferentially to fibronectin and laminin but their endodermal differentiation leads to a reduced adherence to laminin. Exp Cell Res 182, 6-32
35. Vernet C, Abe K, Artzt K (1998) Genetic mapping of 10 microsatellites in the t complex region of mouse Chromosome 17. Mamm Genome 9, 472
36. Walter L, Gunther E (2000) Physical mapping and evolution of the centromeric class I gene-containing region of the rat MHC. Immunogenetics 51, 829-837
37. 12. Cell 9, 523-531
38. Xu Y, Uberbacher EC (1997) Automated gene identification in large-scale genomic sequences. J Comput Biol 4, 325-338
39. Yagi T, Tokunaga T, Furuta Y, Nada S, Yoshida M et al (1993) A novel ES cell line, TT2, with high germline-differentiating potency. Anal Biochem 214, 70-76
40. Yeom YI, Abe K, Bennett D, Artzt K (1992) Tetis-/ embryo-expressed genes are clustered in the mouse H-2K region. Proc Natl Acad Sci USA 89, 773-777