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Volumn 51, Issue 2, 2002, Pages 199-216

Reconstruction of biogeographic and evolutionary networks using reticulograms

Author keywords

Biogeographic history; Distance matrix; Phylogenetic tree; Reticulation network; Reticulogram

Indexed keywords

ALGORITHM; ANIMAL; ARTICLE; ARVICOLINAE; BIOLOGICAL MODEL; BIOLOGY; COMPUTER PROGRAM; FISH; MOLECULAR EVOLUTION; PHYLOGENY; STATISTICAL MODEL;

EID: 0036554652     PISSN: 10635157     EISSN: None     Source Type: Journal    
DOI: 10.1080/10635150252899725     Document Type: Article
Times cited : (84)

References (53)
  • 1
    • 0028794613 scopus 로고
    • Continuous track analysis: A new phylogenic and biogeographic method
    • Alroy, J. 1995. Continuous track analysis: A new phylogenic and biogeographic method. Syst. Biol. 44:152-178.
    • (1995) Syst. Biol. , vol.44 , pp. 152-178
    • Alroy, J.1
  • 2
    • 0001001759 scopus 로고
    • Combination of data in phylogenetic analysis
    • Bandelt, H.-J. 1995. Combination of data in phylogenetic analysis. Plant Syst. and Evol. Suppl. 9:355-361.
    • (1995) Plant Syst. and Evol. Suppl. , vol.9 , pp. 355-361
    • Bandelt, H.-J.1
  • 3
    • 0024488765 scopus 로고
    • Weak hierarchies associated with similarity measures - A phylogenetic clustering technique
    • Bandelt, H.-J., and A. W. M. Dress. 1989. Weak hierarchies associated with similarity measures - A phylogenetic clustering technique. Bull. Math. Biol. 51:133-166.
    • (1989) Bull. Math. Biol. , vol.51 , pp. 133-166
    • Bandelt, H.-J.1    Dress, A.W.M.2
  • 4
    • 0026911267 scopus 로고
    • Split decomposition: A new and useful approach to phylogenetic analysis of distance data
    • Bandelt, H.-J., and A. W. M. Dress. 1992a. Split decomposition: A new and useful approach to phylogenetic analysis of distance data. Mol. Phylogenet. Evol. 1:242-252.
    • (1992) Mol. Phylogenet. Evol. , vol.1 , pp. 242-252
    • Bandelt, H.-J.1    Dress, A.W.M.2
  • 5
    • 34047267637 scopus 로고
    • A canonical decomposition theory for metrics on a finite set
    • Bandelt, H.-J., and A. W. M. Dress. 1992b. A canonical decomposition theory for metrics on a finite set. Adv. Math. 92:47-65.
    • (1992) Adv. Math. , vol.92 , pp. 47-65
    • Bandelt, H.-J.1    Dress, A.W.M.2
  • 7
    • 0031716190 scopus 로고    scopus 로고
    • Rapid evaluation of least-squares and minimum-evolution criteria on phylogenetic trees
    • Bryant, D., and P. Waddell. 1998. Rapid evaluation of least-squares and minimum-evolution criteria on phylogenetic trees. Mol. Biol. Evol. 15:1346-1359.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1346-1359
    • Bryant, D.1    Waddell, P.2
  • 8
    • 0001925593 scopus 로고
    • A note on metric properties of trees
    • Buneman, P. 1974. A note on metric properties of trees. J. Comb. Theory B, 17:48-50.
    • (1974) J. Comb. Theory B , vol.17 , pp. 48-50
    • Buneman, P.1
  • 9
    • 0000116740 scopus 로고
    • A method for deducing branching sequences in phylogeny
    • Camin, J. H., and R. R. Sokal. 1965. A method for deducing branching sequences in phylogeny. Evolution 19:311-326.
    • (1965) Evolution , vol.19 , pp. 311-326
    • Camin, J.H.1    Sokal, R.R.2
  • 10
    • 0023079987 scopus 로고
    • Computational complexity of inferring phylogenies from distance matrices
    • Day, W. H. E. 1987. Computational complexity of inferring phylogenies from distance matrices. Bull. Math. Biol. 49:461-467.
    • (1987) Bull. Math. Biol. , vol.49 , pp. 461-467
    • Day, W.H.E.1
  • 11
    • 0003131752 scopus 로고    scopus 로고
    • Complexity theory: An introduction for practitioners of classification
    • (P. Arabie, L. J. Hubert, and G. De Soete, eds.). World Scientific Publishers, River Branch, New Jersey
    • Day, W. H. E. 1996. Complexity theory: An introduction for practitioners of classification. Pages 199-233 in Clustering and classification (P. Arabie, L. J. Hubert, and G. De Soete, eds.). World Scientific Publishers, River Branch, New Jersey.
    • (1996) Clustering and Classification , pp. 199-233
    • Day, W.H.E.1
  • 12
    • 0002533744 scopus 로고    scopus 로고
    • Tree and other network models for representing data
    • (P. Arabie, L. J. Hubert, and G. De Soete, eds.). World Scientific Publishers, River Branch, New Jersey
    • De Soete, G., and J. D. Carroll. 1996. Tree and other network models for representing data. Pages 157-197 in Clustering and classification (P. Arabie, L. J. Hubert, and G. De Soete, eds.). World Scientific Publishers, River Branch, New Jersey.
    • (1996) Clustering and Classification , pp. 157-197
    • De Soete, G.1    Carroll, J.D.2
  • 13
    • 0002448359 scopus 로고
    • An extension of hierarchical clustering: The pyramidal representation
    • (E. S. Gelsema and L. N. Kanal, eds.). North-Holland, Amsterdam
    • Diday, E., and Bertrand, P. 1986. An extension of hierarchical clustering: The pyramidal representation. Pages 411-424 in Pattern recognition in practice (E. S. Gelsema and L. N. Kanal, eds.). North-Holland, Amsterdam.
    • (1986) Pattern Recognition in Practice , pp. 411-424
    • Diday, E.1    Bertrand, P.2
  • 14
    • 0001978589 scopus 로고    scopus 로고
    • Analyzing and visualizing sequence and distance data using SplitsTree
    • Dress, A., D. Huson, and V. Moulton. 1996. Analyzing and visualizing sequence and distance data using SplitsTree. Discrete Appl. Math. 71:95-109.
    • (1996) Discrete Appl. Math. , vol.71 , pp. 95-109
    • Dress, A.1    Huson, D.2    Moulton, V.3
  • 15
    • 0010912648 scopus 로고
    • Network unfolding
    • Feger, H., and W. Bien. 1982. Network unfolding. Social Networks 4:257-283.
    • (1982) Social Networks , vol.4 , pp. 257-283
    • Feger, H.1    Bien, W.2
  • 16
    • 0010781648 scopus 로고
    • Ordinale netzerk-skalierung [Ordinal network scaling]
    • Feger, H., and U. Droge. 1984. Ordinale netzerk-skalierung [Ordinal network scaling]. Kölner Zt. Soziol. Sozialpsychol. 3:417-423.
    • (1984) Kölner Zt. Soziol. Sozialpsychol. , vol.3 , pp. 417-423
    • Feger, H.1    Droge, U.2
  • 17
    • 0031084471 scopus 로고    scopus 로고
    • An alternating least-squares approach to inferring phylogenies from pairwise distances
    • Felsenstein, J. 1997. An alternating least-squares approach to inferring phylogenies from pairwise distances. Syst. Zool. 46:101-111.
    • (1997) Syst. Zool. , vol.46 , pp. 101-111
    • Felsenstein, J.1
  • 18
    • 0000194822 scopus 로고    scopus 로고
    • Concerning the NJ algorithm and its unweighted version, UNJ
    • (B. Mirkin, F. R. McMorris, F. Roberts, and A. Rzhetsky, eds.). American Mathematical Society. Providence, Rhode Island
    • Gascuel, O. 1997. Concerning the NJ algorithm and its unweighted version, UNJ. Pages 149-170 in Mathematical hierarchies and biology. DIMACS Series in Discrete Mathematics and Theoretical Computer Science (B. Mirkin, F. R. McMorris, F. Roberts, and A. Rzhetsky, eds.). American Mathematical Society. Providence, Rhode Island.
    • (1997) Mathematical Hierarchies and Biology. DIMACS Series in Discrete Mathematics and Theoretical Computer Science , pp. 149-170
    • Gascuel, O.1
  • 19
    • 0034360426 scopus 로고    scopus 로고
    • Data model and classification by trees: The minimum variance reduction (MVR) method
    • Gascuel, O. 2000. Data model and classification by trees: The minimum variance reduction (MVR) method. J. Classif. 17:67-99.
    • (2000) J. Classif. , vol.17 , pp. 67-99
    • Gascuel, O.1
  • 20
    • 0029963710 scopus 로고    scopus 로고
    • A program for calculating and displaying compatibility matrices as an aid in determining reticulate evolution in molecular sequences
    • Jakobsen, B., and S. Easteal. 1996. A program for calculating and displaying compatibility matrices as an aid in determining reticulate evolution in molecular sequences. CABIOS 12:291-295.
    • (1996) CABIOS , vol.12 , pp. 291-295
    • Jakobsen, B.1    Easteal, S.2
  • 21
    • 0010912649 scopus 로고
    • Representing proximities by ordinal networks
    • (H. H. Bock, ed.). North-Holland, Amsterdam
    • Klauer, K. C. 1988. Representing proximities by ordinal networks. Pages 473-477 in Classification and related methods of data analysis (H. H. Bock, ed.). North-Holland, Amsterdam.
    • (1988) Classification and Related Methods of Data Analysis , pp. 473-477
    • Klauer, K.C.1
  • 22
    • 0010850635 scopus 로고
    • Ordinal network representation: Representing proximities by graphs
    • Klauer, K. C. 1989. Ordinal network representation: Representing proximities by graphs. Psychometrika 54:737-750.
    • (1989) Psychometrika , vol.54 , pp. 737-750
    • Klauer, K.C.1
  • 23
    • 0010781451 scopus 로고
    • A mathematical programming approach for fitting general graphs
    • Klauer, K. C., and J. D. Carroll. 1989. A mathematical programming approach for fitting general graphs. J. Classif. 6:247-270.
    • (1989) J. Classif. , vol.6 , pp. 247-270
    • Klauer, K.C.1    Carroll, J.D.2
  • 24
    • 0010913582 scopus 로고
    • Network models for scaling proximity data
    • (R. D. Luce, M. D’Zmura, D. D. Hoffman, G. Iverson, and R. K. Romney, eds.). Erlbaum, Hillsdale, New Jersey
    • Klauer, K. C., and J. D. Carroll. 1995. Network models for scaling proximity data. Pages 319-342 in Geometric representations of perceptual phenomena (R. D. Luce, M. D’Zmura, D. D. Hoffman, G. Iverson, and R. K. Romney, eds.). Erlbaum, Hillsdale, New Jersey.
    • (1995) Geometric Representations of Perceptual Phenomena , pp. 319-342
    • Klauer, K.C.1    Carroll, J.D.2
  • 25
    • 0034340174 scopus 로고    scopus 로고
    • How to account for reticulation events in phylogenetic analysis: A comparison of distance-based methods
    • Lapointe, F.-J. 2000. How to account for reticulation events in phylogenetic analysis: A comparison of distance-based methods. J. Classif. 17:175-184.
    • (2000) J. Classif. , vol.17 , pp. 175-184
    • Lapointe, F.-J.1
  • 26
    • 11944258901 scopus 로고
    • A statistical framework to test the consensus among additive trees (cladograms)
    • Lapointe, F.-J., and P. Legendre. 1992. A statistical framework to test the consensus among additive trees (cladograms). Syst. Biol. 41:158-171.
    • (1992) Syst. Biol. , vol.41 , pp. 158-171
    • Lapointe, F.-J.1    Legendre, P.2
  • 28
    • 0010784814 scopus 로고
    • Report on Seventeenth International Numerical Taxonomy Conference
    • Legendre, P. 1984. Report on Seventeenth International Numerical Taxonomy Conference. Syst. Zool. 33:117-121.
    • (1984) Syst. Zool. , vol.33 , pp. 117-121
    • Legendre, P.1
  • 29
    • 0002419425 scopus 로고
    • Reconstructing biogeographic history using phylogenetic-tree analysis of community structure
    • Legendre, P. 1986. Reconstructing biogeographic history using phylogenetic-tree analysis of community structure. Syst. Zool. 35:68-80.
    • (1986) Syst. Zool. , vol.35 , pp. 68-80
    • Legendre, P.1
  • 30
    • 23044522628 scopus 로고    scopus 로고
    • Special section on reticulate evolution
    • Legendre, P. (Ed.). 2000a. Special section on reticulate evolution. J. Classif. 17:153-195.
    • (2000) J. Classif. , vol.17 , pp. 153-195
    • Legendre, P.1
  • 31
    • 23044522628 scopus 로고    scopus 로고
    • Reticulate evolution: From bacteria to philosopher
    • Legendre, P. 2000b. Reticulate evolution: From bacteria to philosopher. J. Classif. 17:153-157.
    • (2000) J. Classif. , vol.17 , pp. 153-157
    • Legendre, P.1
  • 32
    • 0034340178 scopus 로고    scopus 로고
    • Biological applications of reticulation analysis
    • Legendre, P. 2000c. Biological applications of reticulation analysis. J. Classif. 17:191-195.
    • (2000) J. Classif. , vol.17 , pp. 191-195
    • Legendre, P.1
  • 34
    • 0021541547 scopus 로고
    • Postglacial dispersal of freshwater fishes in the Québec peninsula
    • Legendre, P., and V. Legendre. 1984. Postglacial dispersal of freshwater fishes in the Québec peninsula. Can. J. Fish. Aquat. Sci. 41:1781-1802.
    • (1984) Can. J. Fish. Aquat. Sci. , vol.41 , pp. 1781-1802
    • Legendre, P.1    Legendre, V.2
  • 35
    • 0001261364 scopus 로고
    • Redécouverte après un siècle et reclassification d’une espèce de catostomidé
    • Legendre, V. 1942. Redécouverte après un siècle et reclassification d’une espèce de catostomidé Nat. Can. 69:227-233.
    • (1942) Nat. Can. , vol.69 , pp. 227-233
    • Legendre, V.1
  • 36
    • 0034894308 scopus 로고    scopus 로고
    • T-REX: Reconstructing and visualizing phylogenetic trees and reticulation networks
    • Makarenkov, V. 2001. T-REX: Reconstructing and visualizing phylogenetic trees and reticulation networks. Bioinformatics 17:664-668.
    • (2001) Bioinformatics , vol.17 , pp. 664-668
    • Makarenkov, V.1
  • 38
    • 0033243629 scopus 로고    scopus 로고
    • An algorithm for the fitting of a tree metric according to a weighted least-squares criterion
    • Makarenkov, V., and B. Leclerc. 1999. An algorithm for the fitting of a tree metric according to a weighted least-squares criterion. J. Classif. 16:3-27.
    • (1999) J. Classif. , vol.16 , pp. 3-27
    • Makarenkov, V.1    Leclerc, B.2
  • 39
    • 0002905557 scopus 로고    scopus 로고
    • Improving the additive tree representation of a given dissimilarity matrix using reticulations
    • (H. A. L. Kiers, J.-P. Rasson, P. J. F. Groenen, and M. Schader, eds.). Springer, Namur, Belgium
    • Makarenkov, V., and P. Legendre, 2000. Improving the additive tree representation of a given dissimilarity matrix using reticulations. Pages 35-40 in Data analysis, classification and related methods (H. A. L. Kiers, J.-P. Rasson, P. J. F. Groenen, and M. Schader, eds.). Springer, Namur, Belgium.
    • (2000) Data Analysis, Classification and Related Methods , pp. 35-40
    • Makarenkov, V.1    Legendre, P.2
  • 40
    • 0000924146 scopus 로고
    • Hybrids and phylogenetic systematics I. Patterns of character expression in hybrids and their implications for cladistic analysis
    • McDade, L. A. 1990. Hybrids and phylogenetic systematics I. Patterns of character expression in hybrids and their implications for cladistic analysis. Evolution 44:1685-1700.
    • (1990) Evolution , vol.44 , pp. 1685-1700
    • McDade, L.A.1
  • 41
    • 0000247566 scopus 로고
    • Hybrids and phylogenetic systematics II. The impact of hybrids on cladistic analysis
    • McDade, L. A. 1992. Hybrids and phylogenetic systematics II. The impact of hybrids on cladistic analysis. Evolution 46:1329-1346.
    • (1992) Evolution , vol.46 , pp. 1329-1346
    • McDade, L.A.1
  • 42
    • 0002866105 scopus 로고
    • Representing similarities by distance graphs: Monotonic network analysis MONA
    • (H. H. Bock, ed.). North-Holland, Amsterdam
    • Orth, B. 1988. Representing similarities by distance graphs: Monotonic network analysis MONA. Pages 489-494 in Classification and related methods of data analysis (H. H. Bock, ed.). North-Holland, Amsterdam.
    • (1988) Classification and Related Methods of Data Analysis , pp. 489-494
    • Orth, B.1
  • 43
    • 0002184623 scopus 로고
    • Spatial versus tree representations of proximity data
    • Pruzansky, S., A. Tversky, and J. D. Carroll. 1982. Spatial versus tree representations of proximity data. Psychometrika 47:3-19.
    • (1982) Psychometrika , vol.47 , pp. 3-19
    • Pruzansky, S.1    Tversky, A.2    Carroll, J.D.3
  • 44
    • 0034354816 scopus 로고    scopus 로고
    • Phylogenetic models and reticulations
    • Rohlf, F. J. 2000. Phylogenetic models and reticulations. J. Classif. 17:185-189.
    • (2000) J. Classif. , vol.17 , pp. 185-189
    • Rohlf, F.J.1
  • 45
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and M. Nei. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 46
    • 0000491446 scopus 로고
    • Phylogenetic similarity trees
    • Sattath, S., and A. Tversky. 1977. Phylogenetic similarity trees. Psychometrika 42:319-345.
    • (1977) Psychometrika , vol.42 , pp. 319-345
    • Sattath, S.1    Tversky, A.2
  • 47
    • 0034340175 scopus 로고    scopus 로고
    • Reticulation inside the species boundary
    • Smouse, P. E. 2000. Reticulation inside the species boundary. J. Classif. 17:165-173.
    • (2000) J. Classif. , vol.17 , pp. 165-173
    • Smouse, P.E.1
  • 48
    • 84959812389 scopus 로고
    • Cladistic representation of reticulate evolution
    • Sneath, P. H. A. 1975. Cladistic representation of reticulate evolution. Syst. Zool. 24:360-368.
    • (1975) Syst. Zool. , vol.24 , pp. 360-368
    • Sneath, P.H.A.1
  • 49
    • 0034340216 scopus 로고    scopus 로고
    • Reticulate evolution in bacteria and other organisms: How can we study it?
    • Sneath, P. H. A. 2000. Reticulate evolution in bacteria and other organisms: How can we study it? J. Classif. 17:159-163.
    • (2000) J. Classif. , vol.17 , pp. 159-163
    • Sneath, P.H.A.1
  • 50
    • 0001336205 scopus 로고    scopus 로고
    • Phylogenetic inference
    • (D. M. Hillis, C. Moritz, and B. K. Mable, eds.). Sinauer Associates, Sunderland, Massachusetts
    • Swofford, D. L., G. J. Olsen, P. J. Waddell, and D. M. Hillis. 1996. Phylogenetic inference. Pages 407-514 in Molecular systematics (D. M. Hillis, C. Moritz, and B. K. Mable, eds.). Sinauer Associates, Sunderland, Massachusetts.
    • (1996) Molecular Systematics , pp. 407-514
    • Swofford, D.L.1    Olsen, G.J.2    Waddell, P.J.3    Hillis, D.M.4
  • 51
    • 0010858516 scopus 로고
    • De bestrijding van de muskusrat in Nederland
    • Van Wijngaarden, A. 1955. De bestrijding van de muskusrat in Nederland. Vakbl. Biol. 35:68-72.
    • (1955) Vakbl. Biol. , vol.35 , pp. 68-72
    • Van Wijngaarden, A.1
  • 52
    • 0002807328 scopus 로고
    • Reticulated cladograms and the identification of hybrid taxa
    • (N. I. Platnick and V. A. Funk, eds.). Columbia Univ. Press, New York
    • Wanntorp, H.-E. 1983. Reticulated cladograms and the identification of hybrid taxa. Pages 81-99 in Advances in cladistics (N. I. Platnick and V. A. Funk, eds.). Columbia Univ. Press, New York.
    • (1983) Advances in Cladistics , pp. 81-99
    • Wanntorp, H.-E.1
  • 53
    • 0002275128 scopus 로고
    • Construction of a tree on the basis of a set of distances between its leaves
    • Zaretskii, K. 1965. Construction of a tree on the basis of a set of distances between its leaves. Usp. Mat. Nauk 20:90-92.
    • (1965) Usp. Mat. Nauk. , vol.20 , pp. 90-92
    • Zaretskii, K.1


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